CoVDB Coronavirus Database Go to the lastest version >>
Strain
UK_PIG_1987_LT906582 (Region: UK;  Strain: Porcine epidemic diarrhea virus isolate Br1_87 genome assembly, complete genome: monopartite.;  Date: 1987)
Gene
accessory membrane protein
Description
Annotated in NCBI,  accessory membrane protein
GenBank Accession
Full name
Non-structural protein 3      
Alternative Name
Accessory protein 3a
 

Sequence

CDS
ATGTTTCTTGGACTTTTTCAATACACGATTGACACAGTTGTCAAAGATGTCTCGAAGTCTGTCAACTTGTCTTTGGATGCTGTCCAAGAGTTGGAGCTCAATGTAGTTCCAATTAGACAAGCTTCAAATGTGACGGGTTTTCTTTTCACCAGTGTTTTTGTTTACTTCTTTGCACTGTTTAAAGCGTCTTCTTTGAGGCGCAATTATATTATGTTGGCAGCGCGTTTTGCTGTCGTCTTTCTCTATTGCCCACTTTTATATTACTGTGGTGCACTTTTAGATGCAACTATTATTTGTTGCGCACTTATTGGCAGGCTTTGTTTAGTCTGCTTTTACTCCTGGCGCTATAAAAATGCGCTTTTTATTATCTTTAATACTACGACACTTTCTTTTCTCAATGGTAAAGCAGCTTATTATGACGGCAAATCCATTGTGATTCTAGAAGGTGGCGACCATTACATCACTTTTGGCAACTCTTTTGTTGCTTTCGTTAGTAACATTGACTTGTATCTAGCTATACGTGGGCGGCAAGAAGCTGACCTACATCTGTTGCGAACTGTTGAGCTTCTTGATGGCAAGAAGCTTTATGTCTTTTCGCAACATCAAATTGTTGGCATTACTAATGCTGCATTTGACTCAATTCAACTAGACGAGTATGCTACAATTAGTGAATGA
Protein
MFLGLFQYTIDTVVKDVSKSVNLSLDAVQELELNVVPIRQASNVTGFLFTSVFVYFFALFKASSLRRNYIMLAARFAVVFLYCPLLYYCGALLDATIICCALIGRLCLVCFYSWRYKNALFIIFNTTTLSFLNGKAAYYDGKSIVILEGGDHYITFGNSFVAFVSNIDLYLAIRGRQEADLHLLRTVELLDGKKLYVFSQHQIVGITNAAFDSIQLDEYATISE

Summary

Keywords
Host membrane   Membrane   Transmembrane   Transmembrane helix  
Feature
chain  Non-structural protein 3
EMBL
KR138442    LT906582    LT906581    LT906620    ALF41048.1    SNW64185.1    + More
SNW64191.1    Z24733    AF353511    KC161195    AGE46011.1    MH726408    QCQ20075.1    MF418656    MF418657    AVD96850.1    AVD96851.1    KR061458    ALR84909.1    EU054929    HQ537439    HQ537441    HQ537448    HQ537455    JN825712    JQ023161    JQ664298    KC294277    MK032691    ABS89138.1    ADQ27455.1    ADQ27457.1    ADQ27464.1    ADQ27471.1    AFC98508.1    AFE85963.1    AFK09781.1    AFZ85197.1    QBO24664.1    EF185992    ABM64777.1    KJ662670    KM403155    AID66721.1    AIR95866.1    KR610991    KR610992    AKH45327.1    HQ537436    ADQ27452.1    MF577027    ASV51732.1    KJ857433    AJD09556.1    GU372732    GU372737    ADC67061.1    ADC67066.1    HQ537437    MF737355    ADQ27453.1    ASW30995.1    KJ857430    AJD09553.1    HQ537454    ADQ27470.1    HQ537443    ADQ27459.1    HQ537433    HQ537434    KJ857432    ADQ27449.1    ADQ27450.1    AJD09555.1    EU792474    ACF23008.1    JQ305099    AFE85869.1    KP222528    AKC35355.1    MH744215    QBF53884.1    KU641661    ANB44396.1    KU641660    ANB44395.1    KT799999    AMP46777.1    KU641651    ANB44386.1    KU641643    ANB44378.1    KU641657    ANB44392.1    KU641658    ANB44393.1    KU641676    ANB44411.1    KU641666    ANB44401.1    MH744174    QBF53843.1    MH744182    QBF53851.1    KU641668    ANB44403.1    KU641647    ANB44382.1    KU641662    ANB44397.1    MH744252    QBF53921.1    KU641655    ANB44390.1    KU641648    ANB44383.1    MH744175    QBF53844.1    KU641654    ANB44389.1    MH744210    QBF53879.1    KU641669    ANB44404.1    KU641656    ANB44391.1    MH744187    QBF53856.1    KU641664    ANB44399.1    KT799995    AMP46773.1    KU641670    ANB44405.1    KU641672    ANB44407.1    KU641653    ANB44388.1    MH744199    QBF53868.1    MH744185    QBF53854.1    KU641659    ANB44394.1    KU641671    ANB44406.1    MH744176    QBF53845.1    KU641677    ANB44412.1    GU372733    GU372734    GU372736    GU372738    GU372740    HQ537445    HQ537446    HQ537447    HQ537449    HQ537450    HQ537451    HQ537452    HQ537453    HQ537456    JN547228    JN584170    JN584172    JN547392    JN547393    JN547394    JN547395    JN547399    JN547400    JQ027026    JQ027030    JQ027031    JQ027032    JQ305136    JQ430682    JQ723732    JQ664731    JQ678039    JQ664299    JQ664301    JQ664303    JQ710435    JQ735951    JQ735952    JX002694    JX002695    JX002696    JX002698    JX002699    JX002700    JX002702    JX088695    JX163296    JX501743    JX501744    JX477096    JX501331    JX645187    KC148525    JX880077    JX880078    JX880080    JX878382    JX878383    JX878384    JX910241    JX910248    KC344846    KC344847    KC344848    KC120780    KC120781    KC120782    KC120783    KC120786    KC120791    KC120792    KC120793    KC120794    KC120795    KC120796    KC120797    KC120798    KC120799    KC120800    KC120801    KC161189    KC161190    KC161191    KC161192    KC161197    KC161198    KC210147    KC342811    KC342815    KC342816    KC342817    KC342818    KC342819    KC342820    KC342821    KC342822    KC342823    KC688871    KF267450    JX910245    JX910247    KF476048    KF476050    KF476055    KF468752    KF468753    KF468754    KF495657    KF495658    KF495660    KF650373    KF650374    KF650375    KF804028    KF452322    KF760557    KJ399978    KJ408801    KJ588062    KJ588063    KJ588064    KJ623926    KJ778615    KJ778616    KJ584361    KJ646564    KJ646565    KJ646567    KJ646568    KJ646571    KJ646574    KJ646575    KJ646576    KJ646577    KJ645635    KJ645636    KJ645637    KJ645638    KJ645639    KJ645640    KJ645641    KJ645642    KJ645643    KJ645645    KJ645646    KJ645648    KJ645649    KJ645650    KJ645651    KJ645652    KJ645653    KJ645654    KJ645655    KJ645656    KJ645657    KJ645660    KJ645664    KJ645665    KJ645667    KJ645669    KJ645670    KJ645671    KJ645675    KJ645680    KJ645683    KJ645684    KJ645685    KJ645689    KJ645690    KJ645692    KJ645693    KJ645694    KJ645695    KJ645696    KJ645697    KJ645698    KJ645699    KJ645700    KJ645701    KJ645703    KJ645704    KJ645705    KJ645706    KJ645707    KJ645708    KF840537    KF840538    KF840539    KF840541    KF840542    KF840543    KF840546    KF840547    KF840551    KF840552    KF840553    KF840554    KF840557    KJ777677    KJ777678    KM077139    KM052365    KJ184549    KM392224    KM392225    KM392226    KM392227    KM392228    KM392229    KM392230    KM392231    KM392232    KM189367    KM048297    KM048302    KM048304    KM048305    KM386647    KM213250    KM213251    KM213253    KM213254    KM213255    KJ526096    KJ857436    KJ857438    KJ857439    KJ857443    KJ857453    KJ857454    KM890279    KM890280    KM890283    KM890286    KM890287    KM890292    KM609206    KM609207    KM609212    KM609213    KP281609    KP281612    KP281613    KP281624    KP281625    KP281626    KP281629    KP281630    KP281631    KP281635    KP281638    KP281641    KP281642    KP281654    KP202365    KP222519    KP222520    KP222521    KP222522    KP222530    KP222531    KR265759    KR265760    KR265761    KR265762    KR265763    KR265764    KR265765    KR265766    KR265767    KR265768    KR265769    KR265770    KR265772    KR265773    KR265774    KR265775    KR265776    KR265777    KR265778    KR265779    KR265780    KR265781    KR265782    KR265783    KR265784    KR265785    KR265786    KR265788    KR265789    KR265790    KR265791    KR265792    KR265793    KR265795    KR265796    KR265799    KR265800    KR265801    KR265802    KR265803    KR265805    KR265806    KR265807    KR265808    KR265810    KR265812    KR265813    KR265815    KR265817    KR265819    KR265820    KR265821    KR265822    KR265823    KR265825    KR265826    KR265827    KR265828    KR265829    KR265830    KR265831    KR265832    KR265833    KR265834    KR265840    KR265843    KR265844    KR265846    KP688354    KM975735    KM975736    KM975737    KM975738    KM975739    KM975740    KM975741    KR078299    KR078300    KR873431    KR873432    KR873433    KR873434    KR873435    KR138441    KP403954    KP641661    KP641662    KP641663    KT968511    KT968512    KT968513    KT968514    KT968515    KT323980    KU569509    KT860508    KU380331    KU975389    KR153325    KR153326    KU252649    KX010461    KX010463    KX010464    KX010471    KX010474    KU645767    KU645768    KU645770    KU645775    KU645777    KU645779    KU645780    KU645781    KU645785    KU645788    KU982966    KU982967    KU982968    KU982969    KU982970    KU982975    KU982976    KU982977    KU982978    KU982979    KU982981    KU977480    KU977494    KX066126    KX883635    KX981440    KY070587    KU893861    KX760095    KX550281    KX016034    KX683006    KY499262    KY793536    KX532181    KX532182    KX532183    KY007139    KY007140    MF782687    MF375374    MG334554    MG334555    MG837011    MG837012    KY922774    MH004412    MH004415    MH004416    MH004418    MH004419    MH004420    MH004421    MH006957    MH006958    MH006959    MH006961    MH006964    MH006965    MH013462    MH013465    MH013466    MH052681    MH052682    MH052683    MH052685    MH052687    MH052689    MF522834    MF522839    MF522840    MH107321    MF611897    MF611902    MF611905    MF611906    MF611914    MF611915    MF611917    MF611918    MF611920    MF611922    MF807951    MF807952    MG546687    MG546688    MG546690    MH244928    MH061336    MH061337    MH061338    MH061340    MH061343    LC022792    LC063810    LC063811    LC063812    LC063813    LC063814    LC063815    LC063816    LC063817    LC063818    LC063819    LC063820    LC063821    LC063822    LC063823    LC063824    LC063825    LC063826    LC063827    LC063828    LC063829    LC063830    LC063831    LC063832    LC063833    LC063834    LC063835    LC063836    LC063837    LC063839    LC063840    LC063841    LC063842    LC063843    LC063844    LC063845    LC063846    LC063847    MH243316    MH580562    MH580563    MH580564    MH580566    MH580567    MH580568    MH580570    MH580571    MH580572    MH580573    MH580575    MH580577    MH580578    MH580579    MH580580    MH580581    MH580587    MK032692    MH909798    MH909800    MH909801    MH909805    MH909807    MH909808    MH909812    MH909813    MH909819    MH910099    MH891586    MH726363    MH726364    MH726365    MH726366    MH726369    MH726370    MH726371    MH726372    MH726373    MH726381    MH726382    MK409657    MK409658    MK409659    MK644602    MK656491    MK656492    LT898445    ADC67062.1    ADC67063.1    ADC67065.1    ADC67067.1    ADC67069.1    ADQ27461.1    ADQ27462.1    ADQ27463.1    ADQ27465.1    ADQ27466.1    ADQ27467.1    ADQ27468.1    ADQ27469.1    ADQ27472.1    AEQ55005.1    AEW24859.1    AEW24861.1    AEW24863.1    AEW24864.1    AEW24865.1    AEW24866.1    AEW24870.1    AEW24871.1    AFD23298.1    AFD23302.1    AFD23303.1    AFD23304.1    AFG33341.1    AFI64535.1    AFJ54354.1    AFJ80125.1    AFK08622.1    AFK09782.1    AFK09784.1    AFK09786.1    AFK73390.1    AFK78991.1    AFK78992.1    AFN66547.1    AFN66548.1    AFN66549.1    AFN66551.1    AFN66552.1    AFN66553.1    AFN66555.1    AFP36390.1    AFQ37430.1    AFV30223.1    AFV30224.1    AFV46422.1    AFV59253.1    AFW03975.1    AFZ85187.1    AGA16501.1    AGA16502.1    AGA16504.1    AGA16704.1    AGA16705.1    AGA16706.1    AGC79130.1    AGC79135.1    AGC93145.1    AGC93146.1    AGC93147.1    AGD93102.1    AGD93103.1    AGD93104.1    AGD93105.1    AGD93108.1    AGD93113.1    AGD93114.1    AGD93115.1    AGD93116.1    AGD93117.1    AGD93118.1    AGD93119.1    AGD93120.1    AGD93121.1    AGD93122.1    AGD93123.1    AGE46005.1    AGE46006.1    AGE46007.1    AGE46008.1    AGE46013.1    AGE46014.1    AGG55751.1    AGI42869.1    AGI42871.1    AGI42872.1    AGI42873.1    AGI42874.1    AGI42875.1    AGI42876.1    AGI42877.1    AGI42878.1    AGI42879.1    AGN12478.1    AGS12450.1    AGU70029.1    AGU70030.1    AGX01592.1    AGX01594.1    AGX01599.1    AGY31023.1    AGY31029.1    AGY31035.1    AHA15399.1    AHA15400.1    AHA15402.1    AHA38140.1    AHA38147.1    AHA38154.1    AHA38161.1    AHC03503.1    AHF20046.1    AHL38185.1    AHN60053.1    AHX58671.1    AHX58677.1    AHX58683.1    AHY04235.1    AHZ94882.1    AHZ94888.1    AIA61015.1    AIC82371.1    AIC82372.1    AIC82374.1    AIC82375.1    AIC82378.1    AIC82381.1    AIC82382.1    AIC82383.1    AIC82384.1    AID56668.1    AID56674.1    AID56680.1    AID56686.1    AID56692.1    AID56698.1    AID56704.1    AID56710.1    AID56716.1    AID56728.1    AID56734.1    AID56746.1    AID56752.1    AID56758.1    AID56764.1    AID56770.1    AID56776.1    AID56782.1    AID56788.1    AID56794.1    AID56800.1    AID56818.1    AID56842.1    AID56848.1    AID56860.1    AID56872.1    AID56878.1    AID56884.1    AID56908.1    AID56938.1    AID56956.1    AID56962.1    AID56968.1    AID56992.1    AID56998.1    AID57010.1    AID57016.1    AID57022.1    AID57028.1    AID57034.1    AID57040.1    AID57046.1    AID57052.1    AID57058.1    AID57064.1    AID57076.1    AID57082.1    AID57088.1    AID57094.1    AID57100.1    AID57106.1    AIE15936.1    AIE15941.1    AIE15946.1    AIE15956.1    AIE15961.1    AIE15966.1    AIE15981.1    AIE15987.1    AIE16006.1    AIE16011.1    AIE16016.1    AIE16021.1    AIE16036.1    AIJ01336.1    AIK28709.1    AIK69676.1    AIM47749.1    AIN52089.1    AIN52095.1    AIN52101.1    AIN52107.1    AIN52113.1    AIN52119.1    AIN52125.1    AIN52131.1    AIN52137.1    AIP84468.1    AIT56230.1    AIT56235.1    AIT56237.1    AIT56238.1    AIU44169.1    AIW39675.1    AIW39676.1    AIW39678.1    AIW39679.1    AIW39680.1    AJD07367.1    AJD09559.1    AJD09561.1    AJD09562.1    AJD09566.1    AJD09576.1    AJD09577.1    AJF94313.1    AJF94314.1    AJF94317.1    AJF94320.1    AJF94321.1    AJF94324.1    AJP67415.1    AJP67421.1    AJP67451.1    AJP67457.1    AKA64516.1    AKA64519.1    AKA64520.1    AKA64531.1    AKA64532.1    AKA64533.1    AKA64536.1    AKA64537.1    AKA64538.1    AKA64542.1    AKA64545.1    AKA64548.1    AKA64549.1    AKA64561.1    AKA88560.1    AKC35346.1    AKC35347.1    AKC35348.1    AKC35349.1    AKC35357.1    AKC35358.1    AKJ21702.1    AKJ21708.1    AKJ21714.1    AKJ21720.1    AKJ21726.1    AKJ21732.1    AKJ21738.1    AKJ21744.1    AKJ21750.1    AKJ21756.1    AKJ21762.1    AKJ21768.1    AKJ21780.1    AKJ21786.1    AKJ21792.1    AKJ21798.1    AKJ21804.1    AKJ21810.1    AKJ21816.1    AKJ21822.1    AKJ21828.1    AKJ21834.1    AKJ21840.1    AKJ21846.1    AKJ21852.1    AKJ21858.1    AKJ21864.1    AKJ21876.1    AKJ21882.1    AKJ21888.1    AKJ21894.1    AKJ21900.1    AKJ21906.1    AKJ21918.1    AKJ21924.1    AKJ21942.1    AKJ21948.1    AKJ21954.1    AKJ21960.1    AKJ21966.1    AKJ21978.1    AKJ21984.1    AKJ21990.1    AKJ21996.1    AKJ22008.1    AKJ22020.1    AKJ22026.1    AKJ22038.1    AKJ22050.1    AKJ22062.1    AKJ22068.1    AKJ22074.1    AKJ22080.1    AKJ22086.1    AKJ22098.1    AKJ22104.1    AKJ22110.1    AKJ22116.1    AKJ22122.1    AKJ22128.1    AKJ22134.1    AKJ22140.1    AKJ22146.1    AKJ22152.1    AKJ22176.1    AKJ22194.1    AKJ22200.1    AKJ22212.1    AKO63238.1    AKP80590.1    AKP80597.1    AKP80604.1    AKP80611.1    AKP80618.1    AKP80625.1    AKP80632.1    AKR05179.1    AKR05185.1    AKS50223.1    AKS50228.1    AKS50233.1    AKS50239.1    AKS50245.1    ALF41047.1    ALJ52505.1    ALM31933.1    ALM31939.1    ALM31945.1    ALR86987.1    ALR86988.1    ALR86989.1    ALR86990.1    ALR86991.1    ALS35475.1    AMC39585.1    AMD11125.1    AMR59402.1    AMR60834.1    AMS37101.1    AMS37106.1    ANC68208.1    AND65678.1    AND65680.1    AND65681.1    AND65688.1    AND65691.1    ANI28201.1    ANI28202.1    ANI28204.1    ANI28209.1    ANI28211.1    ANI28213.1    ANI28214.1    ANI28215.1    ANI28219.1    ANI28221.1    ANI85729.1    ANI85735.1    ANI85741.1    ANI85747.1    ANI85753.1    ANI85783.1    ANI85789.1    ANI85795.1    ANI85801.1    ANI85807.1    ANI85819.1    AOZ60322.1    AOZ60336.1    APD70935.1    APG77338.1    APH81307.1    APR64496.1    APX42108.1    APZ75150.1    AQT33895.1    ARJ54147.1    ARM65486.1    ARM65497.1    ARQ03270.1    ARQ18614.1    ARQ18619.1    ARQ18624.1    ATG31095.1    ATG31101.1    ATY72313.1    AUJ79485.1    AVI57397.1    AVI57404.1    AVK78142.1    AVK78148.1    AVP73884.1    AVU05341.1    AVU05362.1    AVU05369.1    AVU05383.1    AVU05390.1    AVU05397.1    AVU05404.1    AVU05411.1    AVU05418.1    AVU05425.1    AVU05439.1    AVU05460.1    AVU05467.1    AVU05474.1    AVU05495.1    AVU05502.1    AWM11457.1    AWM11463.1    AWM11469.1    AWM11481.1    AWM11487.1    AWM11499.1    AWO81890.1    AWO81895.1    AWV57049.1    AWX65668.1    AWX65673.1    AWX65676.1    AWX65677.1    AWX65685.1    AWX65686.1    AWX65688.1    AWX65689.1    AWX65691.1    AWX65693.1    AXK47353.1    AXK47359.1    AYP73633.1    AYP73635.1    AYP73646.1    AYU70936.1    AZL47193.1    AZL47199.1    AZL47205.1    AZL47217.1    AZL47235.1    BAR92899.1    BAT33114.1    BAT33120.1    BAT33126.1    BAT33132.1    BAT33138.1    BAT33144.1    BAT33150.1    BAT33156.1    BAT33162.1    BAT33168.1    BAT33174.1    BAT33180.1    BAT33186.1    BAT33192.1    BAT33198.1    BAT33204.1    BAT33210.1    BAT33216.1    BAT33222.1    BAT33228.1    BAT33234.1    BAT33240.1    BAT33246.1    BAT33252.1    BAT33258.1    BAT33264.1    BAT33270.1    BAT33276.1    BAT33288.1    BAT33294.1    BAT33300.1    BAT33306.1    BAT33312.1    BAT33318.1    BAT33324.1    BAT33330.1    BAT33336.1    QBA57546.1    QBK46429.1    QBK46430.1    QBK46431.1    QBK46433.1    QBK46434.1    QBK46435.1    QBK46437.1    QBK46438.1    QBK46439.1    QBK46440.1    QBK46442.1    QBK46444.1    QBK46445.1    QBK46446.1    QBK46447.1    QBK46448.1    QBK46454.1    QBO24670.1    QCE31476.1    QCE31478.1    QCE31479.1    QCE31483.1    QCE31485.1    QCE31486.1    QCE31490.1    QCE31491.1    QCE31497.1    QCL09021.1    QCO95405.1    QCQ19805.1    QCQ19811.1    QCQ19817.1    QCQ19823.1    QCQ19841.1    QCQ19847.1    QCQ19853.1    QCQ19859.1    QCQ19865.1    QCQ19913.1    QCQ19919.1    QEE80060.1    QEE80066.1    QEE80072.1    QFG01695.1    QFG71754.1    QFG71755.1    SNQ28071.1    KJ857451    AJD09574.1    KJ857434    AJD09557.1    HQ537435    ADQ27451.1    JN676145    JQ678037    KJ813804    KT968516    AEV89929.1    AFK08620.1    AII25432.1    ALR86992.1    LM645057    CDW77206.1    KC120790    AGD93112.1    JQ664300    AFK09783.1    KJ020932    KR011756    KT199103    KU297956    KX010466    KX010468    KU645773    KU645783    KU645784    KU645787    KU977483    KY019623    KY019624    KY111278    KX289955    MF611901    LM645058    LT898408    LT898415    LT898413    LT898414    LT898411    LT898416    LT898418    LT898409    LT898420    LT898412    LT898410    LT898432    LT898425    LT898427    LT898430    LT898433    LT898436    LT898438    LT898440    LT898439    LT898435    LT898441    LT898443    LT898446    LT898444    LT898417    LT898447    LT900498    LT900499    LT900500    LT900502    LT900501    AHM88218.1    AKE47379.1    ALP06211.1    ALU34113.1    AND65683.1    AND65685.1    ANI28207.1    ANI28217.1    ANI28218.1    ANI28220.1    AOZ60325.1    APG30999.1    APG31006.1    AQY61720.1    ASB30082.1    AWX65672.1    CDW77214.1    SNQ27888.1    SNQ27894.1    SNQ27900.1    SNQ27913.1    SNQ27918.1    SNQ27924.1    SNQ27932.1    SNQ27942.1    SNQ27950.1    SNQ27956.1    SNQ27962.1    SNQ27968.1    SNQ27975.1    SNQ27986.1    SNQ27992.1    SNQ27998.1    SNQ28017.1    SNQ28023.1    SNQ28033.1    SNQ28039.1    SNQ28046.1    SNQ28052.1    SNQ28058.1    SNQ28065.1    SNQ28077.1    SNQ28083.1    SNQ28089.1    SNT95654.1    SNT95660.1    SNT95666.1    SNT95672.1    SNT95678.1    KU982971    ANI85759.1    KR265797    AKJ21930.1    KY348791    KY348792    KX852337    ASI38592.1    ASI38593.1    ASK39743.1    KJ645644    KR265824    KR265845    AID56722.1    AKJ22092.1    AKJ22206.1    MH726384    QCQ19931.1    MK606369    QCB65307.1    KC342824    KR818833    AGI42880.1    ALL27309.1    KC161188    AGE46004.1    KP222524    AKC35351.1    KY929405    ART85700.1    KJ857442    AJD09565.1    KJ857431    AJD09554.1    KC294279    AFZ85199.1    HQ537438    ADQ27454.1    MH593900    QAY31032.1    KM890284    AJF94318.1    MH891589    QCO95423.1    KU641637    ANB44372.1    JQ027027    KR138438    KR138440    AFD23299.1    ALF41044.1    ALF41046.1    MF418653    MF418654    MF418655    MF418658    AVD96847.1    AVD96848.1    AVD96849.1    AVD96852.1    JQ664304    AFK09787.1    KJ645702    AID57070.1    MG837058    AWQ28489.1    KP281623    AKA64530.1    JX880075    AGA16499.1    KM890310    AJF94325.1    MF281416    AWA45275.1    KM048306    AIT56239.1    KR809885    AKV62620.1    KM048300    AIT56233.1    KJ196348    KX580953    AHW40031.1    AQK38169.1    KF478915    KF495662    AHA15398.1    AHA15404.1    JX501333    KM048299    AFV59255.1    AIT56232.1    GU372735    GU372741    MH006960    MH006962    MH006963    ADC67064.1    ADC67070.1    AVU05432.1    AVU05446.1    AVU05453.1   
Proteomes
UP000269222    UP000274194    UP000276154    UP000008159    UP000124407    UP000122353    + More
UP000133157    UP000170862    UP000109281    UP000162314    UP000156820    UP000171486    UP000095955    UP000096231    UP000096695    UP000096781    UP000096896    UP000096940    UP000097201    UP000097739    UP000097949    UP000098101    UP000098326    UP000099262    UP000099939    UP000100263    UP000101279    UP000101715    UP000101883    UP000102377    UP000102422    UP000103144    UP000103187    UP000103230    UP000103525    UP000103873    UP000104212    UP000104329    UP000104528    UP000104629    UP000104743    UP000105228    UP000105572    UP000105717    UP000106279    UP000106837    UP000107011    UP000107079    UP000107726    UP000107825    UP000107890    UP000108525    UP000108853    UP000108901    UP000108998    UP000109171    UP000109784    UP000110005    UP000110085    UP000110170    UP000110553    UP000110779    UP000110780    UP000111048    UP000111596    UP000111853    UP000111997    UP000112725    UP000114423    UP000114426    UP000114579    UP000114886    UP000115696    UP000115820    UP000115913    UP000116900    UP000117024    UP000117463    UP000117465    UP000117616    UP000118621    UP000118902    UP000119410    UP000119498    UP000119870    UP000120106    UP000120524    UP000120529    UP000120737    UP000121150    UP000121532    UP000121581    UP000122106    UP000122310    UP000122785    UP000122852    UP000122996    UP000123046    UP000123161    UP000123657    UP000124209    UP000124684    UP000124742    UP000124784    UP000125425    UP000125691    UP000125786    UP000126216    UP000127334    UP000127953    UP000127975    UP000128363    UP000128879    UP000128894    UP000129574    UP000130438    UP000130717    UP000131950    UP000132225    UP000132509    UP000132713    UP000132791    UP000132921    UP000133030    UP000133192    UP000133398    UP000133992    UP000134226    UP000134395    UP000134981    UP000135367    UP000135502    UP000135609    UP000135702    UP000135713    UP000135804    UP000135878    UP000136286    UP000137076    UP000137135    UP000137642    UP000138117    UP000138881    UP000139036    UP000140002    UP000140886    UP000141497    UP000141930    UP000141975    UP000142054    UP000142467    UP000142735    UP000142872    UP000142994    UP000143145    UP000143266    UP000145028    UP000145713    UP000145872    UP000145986    UP000146202    UP000146214    UP000147164    UP000147626    UP000147669    UP000148016    UP000148048    UP000148065    UP000148263    UP000148798    UP000148893    UP000150601    UP000151163    UP000151262    UP000153081    UP000153127    UP000153418    UP000153741    UP000153753    UP000154143    UP000154382    UP000154578    UP000154704    UP000154723    UP000154811    UP000155212    UP000155241    UP000155578    UP000155842    UP000156035    UP000156412    UP000158257    UP000158262    UP000158401    UP000158498    UP000158624    UP000159218    UP000160024    UP000160123    UP000160238    UP000160819    UP000161506    UP000163006    UP000163543    UP000164459    UP000164654    UP000165932    UP000167803    UP000168320    UP000168469    UP000168944    UP000169265    UP000169341    UP000169811    UP000169922    UP000169926    UP000170945    UP000170995    UP000171222    UP000171736    UP000171879    UP000172207    UP000172961    UP000173775    UP000174062    UP000174684    UP000174771    UP000175330    UP000175484    UP000180355    UP000281631    UP000138211    UP000097091    UP000100204    UP000132054    UP000141838    UP000155002    UP000267271    UP000267306    UP000269355    UP000269867    UP000270191    UP000270497    UP000271078    UP000271135    UP000271448    UP000272790    UP000273819    UP000274124    UP000274353    UP000274834    UP000274992    UP000275549    UP000275656    UP000275831    UP000276052    UP000276298    UP000276964    UP000277020    UP000277927    UP000278039    UP000278495    UP000278554    UP000278990    UP000279022    UP000280517    UP000280596    UP000281047    UP000281935    UP000112445    UP000109831    UP000130673    UP000168169    UP000141524    UP000136506    UP000117357    UP000129155   
Pfam
PF03053   Corona_NS3b
Interpro
IPR004293   Coronavirus_Orf3b
PDB
6IYC     E-value=2.37817,     Score=68

Ontologies

KEGG

Subcellular Location

From MSLVP
Multi-Pass Membrane
From Uniprot
Host membrane  

Topology

Length:
224
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
81.88271
Exp number, first 60 AAs:
19.37118
Total prob of N-in:
0.04042
POSSIBLE N-term signal
sequence
outside
1  -  40
TMhelix
41  -  63
inside
64  -  75
TMhelix
76  -  98
outside
99  -  224
 
 

Population Genetic Test Statistics

Pi
0.2985848
Theta
0.4567876
Tajima's D
-1.2383251
CLR
3.634605
Interpretation
No evidence of Selection

Genomic alignment in the CDS region

 
 

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
CHINA_HS_2019_MN908947    
CHINA_AVIAN_2008_NC_016995    
CHINA_AVIAN_2007_NC_016991    
CHINA_MURINE_2015_NC_035191    
CANADA_AVIAN_2007_NC_010800    
USA_PIG_2000_NC_038861    
CHINA_AVIAN_2007_NC_011549    
ITALY_PIG_2009_NC_028806    
GERMANY_PIG_2012_LT545990    
CHINA_AVIAN_2007_NC_016992    
CHINA_BAT_2005_NC_009657    
CANADA_HS_2003_NC_004718    
CHINA_BAT_2014_NC_030886    
CHINA_BAT_2005_NC_018871    
USA_MURINE_2009_NC_012936    
CHINA_RABBIT_2006_NC_017083    
UK_PIG_2000_NC_003436 Protein
NP_598311.1
ROMANIA_PIG_2015_LT898435 Protein
SNQ28046.1
ROMANIA_PIG_2015_LT898436 Protein
SNQ28017.1
GERMANY_PIG_2015_LT898444 Protein
SNQ28077.1
GERMANY_PIG_2015_LT898414 Protein
SNQ27913.1
GERMANY_PIG_2015_LT898439 Protein
SNQ28039.1
GERMANY_PIG_2015_LT898413 Protein
SNQ27900.1
GERMANY_PIG_2015_LT898412 Protein
SNQ27956.1
GERMANY_PIG_2015_LT898411 Protein
SNQ27918.1
GERMANY_PIG_2015_LT898416 Protein
SNQ27924.1
GERMANY_PIG_2015_LT898443 Protein
SNQ28058.1
GERMANY_PIG_2015_LT898420 Protein
SNQ27950.1
GERMANY_PIG_2015_LT898408 Protein
SNQ27888.1
GERMANY_PIG_2015_LT898423 Protein
SNQ27933.1
GERMANY_PIG_2015_LT898432 Protein
SNQ27968.1
GERMANY_PIG_2015_LT898409 Protein
SNQ27942.1
GERMANY_PIG_2015_LT898425 Protein
SNQ27975.1
GERMANY_PIG_2015_LT898446 Protein
SNQ28065.1
GERMANY_PIG_2014_LT898438 Protein
SNQ28023.1
GERMANY_PIG_2014_LT898440 Protein
SNQ28033.1
GERMANY_PIG_2014_LT900501 Protein
SNT95678.1
GERMANY_PIG_2014_LT898427 Protein
SNQ27986.1
GERMANY_PIG_2014_LT898415 Protein
SNQ27894.1
GERMANY_PIG_2014_LT898421 Protein
SNQ27908.1
GERMANY_PIG_2014_LT898431 Protein
SNQ27980.1
GERMANY_PIG_2014_LT898410 Protein
SNQ27962.1
GERMANY_PIG_2014_LT900498 Protein
SNT95654.1
GERMANY_PIG_2014_LT898430 Protein
SNQ27992.1
GERMANY_PIG_1978_LT897799 Protein
SNC44846.1
GERMANY_PIG_2014_LT898447 Protein
SNQ28089.1
GERMANY_PIG_2014_LT898426 Protein
SNQ28011.1
GERMANY_PIG_2014_LT898417 Protein
SNQ28083.1
GERMANY_PIG_2014_LT900500 Protein
SNT95666.1
GERMANY_PIG_2014_LT898445 Protein
SNQ28071.1
AUSTRIA_PIG_2015_LT898418 Protein
SNQ27932.1
AUSTRIA_PIG_2015_LT898441 Protein
SNQ28052.1
AUSTRIA_PIG_2015_LT898433 Protein
SNQ27998.1
AUSTRIA_PIG_2015_LT900502 Protein
SNT95672.1
GERMANY_PIG_2015_LT900499 Protein
SNT95660.1
BELGIUM_PIG_1980_LT906620 Protein
SNX30665.1
BELGIUM_PIG_1977_LT905450 Protein
SNU46337.1
SWITZERLAND_PIG_2003_LT905451 Protein
SNU46343.1
BELGIUM_PIG_1978_LT906581 Protein
SNW64191.1
UK_PIG_1987_LT906582 Protein
SNW64185.1
CHINA_PIG_2009_NC_016990    
CHINA_PIG_2010_NC_039208    
KENYA_BAT_2010_KY073745    
KENYA_BAT_2010_NC_032107    
CHINA_AVIAN_2007_NC_016994    
EUROPE_MURINE_2004_AY700211    
CHINA_AVIAN_2007_NC_011550    
USA_MURINE_1997_NC_001846    
USA_MURINE_1998_NC_023760    
MID_EAST_HS_2012_NC_019843    
CHINA_AVIAN_2007_NC_016993    
CHINA_MURINE_2013_NC_032730    
USA_HS_2004_AY585228    
NETHERLAND_HS_2004_NC_005831    
CHINA_HS_2004_NC_006577    
EUROPE_HS_2000_NC_002645    
NETHERLAND_FERRET_2010_NC_030292    
JAPAN_FERRET_2013_LC119077    
USA_FELINE_2005_NC_002306    
CHINA_MURINE_2011_NC_034972    
CHINA_AVIAN_2007_NC_016996    
ARABIA_CAMEL_2015_NC_028752    
CHINA_AVIAN_2007_NC_011547    
CHINA_BAT_2012_NC_028824    
CHINA_BAT_2013_NC_028814    
CHINA_BAT_2013_NC_028833    
CHINA_BAT_2011_NC_028811    
USA_BOVIN_2001_NC_003045    
CHINA_MURINE_2012_NC_026011    
GERMANY_ERINACEINAE_2012_NC_022643    
GERMANY_ERINACEINAE_2012_NC_039207    
UK_HS_2012_NC_038294    
AMERICA_WHALE_2007_NC_010646    
CHINA_BAT_2013_NC_025217    
UGANDA_BAT_2013_NC_034440    
CHINA_BAT_2006_NC_009021    
CHINA_BAT_2008_NC_010438    
CHINA_BAT_2006_NC_009020    
CHINA_BAT_2006_NC_009019    
CHINA_BAT_2006_NC_009988    
USA_BAT_2006_NC_022103    
BULGARIA_BAT_2008_NC_014470    
CHINA_BAT_2008_NC_010437    
USA_AVIAN_2004_NC_001451    
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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