Strain

CHINA_BAT_2005_NC_009657 (Region: China;  Strain: Scotophilus bat coronavirus 512, complete genome.;  Date: 2005)

Gene

putative ORF3

Description

Annotated in NCBI,  putative ORF3

Location

NC_009657(+):24786-25460

GenBank Accession

YP_001351685.1

Full name

Non-structural protein 3      

Alternative Name

Accessory protein 3a

CDS

ATGTTTCTTGGTCTGTTCCAGTATACTATTGATACTGCAGTTGAGCACACTGTAGAACATGCTAACTTGTCCCAAGAAGAGGCTTTGATGTTGGAAGAAAACATCGTTCCTCTGAGACAAGCTACACATGTTACTGGATTTTTGCTCACCAGTGTTTTTGTTTACTTCTTTGCACTGTTTAAGGCTTCAAGCTACAAACGTAATTTGCTGCTATTTTTAGCACGTTTGTTAGCTTTATTAATTTATGCACCCATTTTAATATTTTGTGGTGCATACTTGGACGCTTTTATAGTAGTCGCAACATTGACTTCTCGTCTATTGTTTTTGACCTACTACTCATGGCGTTATAAAACTTATAAATTTCTTATTTACAACTCTTCCACACTTATGTTTTTACATGGTCATGCCAATTATTATAATGGCAGGCCCTATGTAATGCTTGAAGGTGGAAGCCATTACGTCACATTGGGTACTGATATAGTACCATTCGTCAGCCGAAGTAATCTCTATCTTGCCATTCGTGGTAGTGCTGAGTCAGATATCCAACTGTTGAGAACTGTCGAGTTGTTAGATGGTAATTACCTCTACATTTTCTCCAGTTGTCAAGTCGTTGGTGTTACTAATTCAGGTTTTGAGGAGATTCAACTAGACGAATATGCTACAATTAGTGAATGA

Protein

MFLGLFQYTIDTAVEHTVEHANLSQEEALMLEENIVPLRQATHVTGFLLTSVFVYFFALFKASSYKRNLLLFLARLLALLIYAPILIFCGAYLDAFIVVATLTSRLLFLTYYSWRYKTYKFLIYNSSTLMFLHGHANYYNGRPYVMLEGGSHYVTLGTDIVPFVSRSNLYLAIRGSAESDIQLLRTVELLDGNYLYIFSSCQVVGVTNSGFEEIQLDEYATISE

Miscellaneous

Bat coronavirus 512/2005 is highly similar to porcine epidemic diarrhea virus (PEDV).

Keywords

Host membrane   Membrane   Reference proteome   Transmembrane   Transmembrane helix  

Feature

chain  Non-structural protein 3

Uniprot

A0A3G3NHP3   Q0Q465   A0A3G3NGB2   A0A3G3NHK5   A0A3G3NHE7   A0A3G3NGZ8   + More
A0A219TU70   A0A3G3NGT8   A0A3G3NH43   A0A3G3NHL9   A0A3G3NGG5   A0A3G3NGW6   A0A3G3NHB8   A0A3G3NGZ1   A0A3G3NGE6   A0A3G3NHL5   A0A3G3NGF5   A0A3G3NGX3   A0A3G3NH25   A0A3G3NGJ8   A0A3G3NGI5   A0A5J6DDY7   A0A4Y6A773   D3XNW8   D3XNW4   A0A0U2UAH2   A0A0B5INN1   A0A411NPC9   A0A411NPH2   A0A4D6P035   A0A411NPJ9   A0A411NPE4   A0A1S6XZP4   A0A411NPH9   A0A411NPC3   A0A411NPC0   A0A411NPD4   A0A411NPH4   A0A411NPJ0   A0A411NPC1   A0A411NPK3   A0A411NPC8   A0A411NPJ1   A0A411NPK4   A0A411NPG1   A0A411NPI9   A0A411NPL8   A0A411NPB7   A0A411NPJ4   A0A411NPF5   A0A411NPH6   A0A411NPK5   A0A411NPM8   A0A411NPA8   A0A411NPE6   A0A411NPG9   A0A411NPH5   A0A411NPE5   A0A411NPD8   A0A411NPF3   A0A411NPK9   A0A411NPF2   A0A411NPF0   A0A411NPD9   A0A411NPJ5   A0A411NPI6   A0A0E3TJV2   A0A0U1VEK2   X5CC42   K4P5B0   L0CLX1   A0A2Z4N5X0   A0A190LBQ0   A0A0U1YH23   A0A167NFX0   A0A3G3C9B3   I3QJZ9   A0A160EEF0   L7Y082   S0API7   A0A411NPF9   A0A5J6VDZ1   A0A411NPF1   A0A097I514   A0A167NFF4   A0A097I537   A0A160EDB4   A0A238TPN3   A0A4D6FWV9   A0A0U2UEC2   A0A185QEM7   A0A0U2LMD3   A0A286R3Q8   A0A0B5J0Z8   A0A3S9VME3   A0A411NPD3   A0A160EDC3   U6A623   A0A190LBM1   A0A1Y0D9J8  

Pubmed

16840328    31503522    20544234    24818713    27178127    23929470    + More
25279722    29368629    26893409   

EMBL

MH687945    MH687948    MH687954    MH687963    MH687964    AYR18468.1    + More
AYR18482.1    AYR18514.1    AYR18568.1    AYR18574.1    DQ648858    MH687934    AYR18401.1    MH687946    AYR18474.1    MH687941    AYR18443.1    MH687967    AYR18592.1    KT346372    ANV78631.1    MH687957    AYR18532.1    MH687943    MH687956    AYR18456.1    AYR18526.1    MH687949    AYR18488.1    MH687935    AYR18407.1    MH687962    AYR18562.1    MH687936    MH687959    AYR18413.1    AYR18544.1    MH687938    MH687944    MH687955    MH687958    MH687960    MH687965    AYR18425.1    AYR18462.1    AYR18520.1    AYR18538.1    AYR18550.1    AYR18580.1    MH687939    AYR18431.1    MH687950    AYR18494.1    MH687937    MH687961    MH687966    AYR18419.1    AYR18556.1    AYR18586.1    MH687951    AYR18500.1    MH687952    AYR18506.1    MH687940    AYR18437.1    MH687942    AYR18449.1    MN065811    QER90705.1    MG923574    QDE55566.1    GU372739    ADC67068.1    GU372735    GU372741    MH006960    MH006962    MH006963    ADC67064.1    ADC67070.1    AVU05432.1    AVU05446.1    AVU05453.1    KT357514    KT357515    KT357516    KT357518    KT357519    KT357520    ALR34682.1    ALR34683.1    ALR34684.1    ALR34686.1    ALR34687.1    ALR34688.1    KM890281    AJF94315.1    MH744183    QBF53852.1    MH744223    QBF53892.1    MH909809    QCE31487.1    MH744191    QBF53860.1    MH744190    QBF53859.1    KX791060    AQX36343.1    MH744171    QBF53840.1    MH744170    QBF53839.1    MH744173    QBF53842.1    MH744172    QBF53841.1    MH744218    QBF53887.1    MH744244    QBF53913.1    MH744162    QBF53831.1    MH744248    QBF53917.1    MH744184    QBF53853.1    MH744245    QBF53914.1    MH744246    QBF53915.1    MH744214    QBF53883.1    MH744181    QBF53850.1    MH744237    QBF53906.1    MH744163    QBF53832.1    MH744236    QBF53905.1    MH744205    QBF53874.1    MH744220    QBF53889.1    MH744219    QBF53888.1    MH744247    QBF53916.1    MH744158    QBF53827.1    MH744188    QBF53857.1    MH744212    QBF53881.1    MH744189    QBF53858.1    MH744195    QBF53864.1    MH744194    QBF53863.1    MH744200    QBF53869.1    MH744201    QBF53870.1    MH744192    QBF53861.1    MH744196    QBF53865.1    MH744193    QBF53862.1    MH744209    QBF53878.1    MH744230    QBF53899.1    KP222525    AKC35352.1    KJ857447    AJD09570.1    KJ196348    KX580953    AHW40031.1    AQK38169.1    JX501329    AFV59251.1    JX880081    AGA16505.1    MF611899    MF611908    MF611909    AWX65670.1    AWX65679.1    AWX65680.1    KP281650    KP281651    AKA64557.1    AKA64558.1    KJ857441    AJD09564.1    KU641675    ANB44410.1    MG546689    AYP73640.1    JQ664302    KX852322    KX852331    KX852332    KX852333    KX852334    KX852335    AFK09785.1    ASK39728.1    ASK39737.1    ASK39738.1    ASK39739.1    ASK39740.1    ASK39741.1    KU641667    ANB44402.1    KC120788    KP222532    AGD93110.1    AKC35359.1    KF272920    KJ645647    KJ645661    KJ645662    KJ645666    KJ645673    KJ645674    KJ645677    KJ645678    KJ645679    KJ645686    KJ645688    KR265771    KR265787    KR265794    KR265798    KR265804    KR265814    KR265816    KR265818    KU982974    MF373643    AGO58925.1    AID56740.1    AID56824.1    AID56830.1    AID56854.1    AID56896.1    AID56902.1    AID56920.1    AID56926.1    AID56932.1    AID56974.1    AID56986.1    AKJ21774.1    AKJ21870.1    AKJ21912.1    AKJ21936.1    AKJ21972.1    AKJ22032.1    AKJ22044.1    AKJ22056.1    ANI85777.1    AUV64574.1    MH744202    QBF53871.1    MK656494    QFG71757.1    MH744203    QBF53872.1    KM048306    AIT56239.1    KU641638    ANB44373.1    KM048298    AIT56231.1    KU641641    ANB44376.1    LT898426    SNQ28011.1    MK606369    QCB65307.1    KT941120    ALR74758.1    KP281643    KP281644    AKA64550.1    AKA64551.1    KT357517    ALR34685.1    MF577027    ASV51732.1    KM890291    KU977498    AJF94323.1    AOZ60340.1    MK250953    AZS27726.1    MH744180    QBF53849.1    KU641649    ANB44384.1    KF495659    KF495663    AHA15401.1    AHA15405.1    KP281645    AKA64552.1    KY928065    ART84251.1   

Proteomes

UP000113079    UP000129155    UP000096250    UP000102715    UP000106554    UP000109462    + More
UP000112678    UP000114176    UP000116623    UP000119763    UP000120045    UP000124555    UP000128202    UP000139218    UP000148839    UP000149058    UP000153562    UP000158343    UP000161341    UP000163819    UP000166175    UP000170794    UP000270545    UP000127765   

Pfam

PF03053   Corona_NS3b

Interpro

IPR004293   Coronavirus_Orf3b

ProteinModelPortal

A0A3G3NHP3   Q0Q465   A0A3G3NGB2   A0A3G3NHK5   A0A3G3NHE7   A0A3G3NGZ8   + More
A0A219TU70   A0A3G3NGT8   A0A3G3NH43   A0A3G3NHL9   A0A3G3NGG5   A0A3G3NGW6   A0A3G3NHB8   A0A3G3NGZ1   A0A3G3NGE6   A0A3G3NHL5   A0A3G3NGF5   A0A3G3NGX3   A0A3G3NH25   A0A3G3NGJ8   A0A3G3NGI5   A0A5J6DDY7   A0A4Y6A773   D3XNW8   D3XNW4   A0A0U2UAH2   A0A0B5INN1   A0A411NPC9   A0A411NPH2   A0A4D6P035   A0A411NPJ9   A0A411NPE4   A0A1S6XZP4   A0A411NPH9   A0A411NPC3   A0A411NPC0   A0A411NPD4   A0A411NPH4   A0A411NPJ0   A0A411NPC1   A0A411NPK3   A0A411NPC8   A0A411NPJ1   A0A411NPK4   A0A411NPG1   A0A411NPI9   A0A411NPL8   A0A411NPB7   A0A411NPJ4   A0A411NPF5   A0A411NPH6   A0A411NPK5   A0A411NPM8   A0A411NPA8   A0A411NPE6   A0A411NPG9   A0A411NPH5   A0A411NPE5   A0A411NPD8   A0A411NPF3   A0A411NPK9   A0A411NPF2   A0A411NPF0   A0A411NPD9   A0A411NPJ5   A0A411NPI6   A0A0E3TJV2   A0A0U1VEK2   X5CC42   K4P5B0   L0CLX1   A0A2Z4N5X0   A0A190LBQ0   A0A0U1YH23   A0A167NFX0   A0A3G3C9B3   I3QJZ9   A0A160EEF0   L7Y082   S0API7   A0A411NPF9   A0A5J6VDZ1   A0A411NPF1   A0A097I514   A0A167NFF4   A0A097I537   A0A160EDB4   A0A238TPN3   A0A4D6FWV9   A0A0U2UEC2   A0A185QEM7   A0A0U2LMD3   A0A286R3Q8   A0A0B5J0Z8   A0A3S9VME3   A0A411NPD3   A0A160EDC3   U6A623   A0A190LBM1   A0A1Y0D9J8  

KEGG

vg:11266519    

GO

GO:0016021  C:integral component of membrane
GO:0033644  C:host cell membrane

From MSLVP

Multi-Pass Membrane

From Uniprot

Host membrane  

Length:

224

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

65.83469

Exp number, first 60 AAs:

19.93892

Total prob of N-in:

0.01141

POSSIBLE N-term signal

sequence

outside

1  -  39

TMhelix

40  -  62

inside

63  -  68

TMhelix

69  -  91

outside

92  -  94

TMhelix

95  -  114

inside

115  -  224

 

 

Pi

0.3113342

Theta

0.5267128

Tajima's D

-1.5595964

CLR

5.832646

Interpretation

No evidence of Selection