Strain

CHINA_AVIAN_2007_NC_011549 (Region: Hong Kong;  Strain: Thrush coronavirus HKU12-600, complete genome.;  Date: 2007)

Gene

spike glycoprotein

Description

Annotated in NCBI,  spike glycoprotein

Location

NC_011549(+):19433-23011

GenBank Accession

YP_002308497.1

CDS

ATGCAGAGAGTTATATTAATTTGCTTCATAACCCTAGCATCAGCTGCCAGGCTGGTTGATAGAGTTTTTGATGCATTAACTTTTCCAAATGCTCATCAATATCTTCGAGACACAAGGCAAATTCAACCTCGTTGGTTGCCTAGTGCTGAAGAACCTAAATCAGATGGCAAGGGACATTTTACCCAAAATGTCCATAGATTTGCTTTTCTTACTAATGGTTCATCACCTGTTGACCAAATTATTCGTACAACGCAACCTCTGCTTTTGCGTTGTCCTCAATGGTTTGGTTATAATGGTAGTGGTAATTGGGTGCTAAAATTTAATTTTAGTGAATCTAATTACTGTAATGATGGTTACAATTATAATGGTAACAAAGTAGTCTCACACATAAGACTTATTGGTGCATTTTTAGCTTCACCATCTGTTGATTATGTGTTTACATTGCAAACTACCTCTGGTAGCACCTACTACTTAAACTGCAGCACATCACAACGTCCAGTTGGATTTGATGCAGAAATGCAACGTAATTACTGTTATGTTAAGACTGCTAATTACACGCAATTTATAGGCATTCTTCCTGAAAGAGTAGCTGATGTTACTTTTTCCAGAGAGGGCACCTTTTATGTCAATGGCTTTGGCATGGGTTCCTTTGGTCAGCTGGCCCGTATCACAGTTGATAAAGGGGCTCTAGCCACTTTTAACCATTCATGGGCATATTTCGTTGATGAAGCAGATGTGCTTCTTAACATAACTGACAGCCAGATTCAGGGTATTGTCTATTGTGACAAGGACCTGTATGATCATCTTCGCTGCCAGCAGTCATCATTTAGTTTAACTGATGGATTTTATTCAACAGCTAAATATACTACAAATCAGCAGAGGAAAACAATTTTTGTTACTCTGCCTAAACACACATATACAGAGACTATCTCAATCTTGCCTAACATTTCAAACCCAGCTTACCCTGATGGTAGTACCAATGGTCCTGCATTGGGTTGGTGGGTTGGTACAATGAATGTTTTATTTAATAATTCACAAACACTTTGTGTTAATTCATCATTTTTTATGGTTAACATTACTTTTAAATGTTGGTTGAAACCTCACCCTACCAAACCTTCTGACGAATATAAGTGCATAGGTGGTTTACCCACAGCTCAGGTTAAACTACCTGACTGGCCTTTTGCACCTTATTATTCTTTTAGCCAACTTTGTTTGTCTAGTACATACCAGGTTGGTTATTCCACTTTCTATTTCCAGTATTGGAACCAAGGTACTAATAAAAGATGGGAATCAAAACCCCTCTTTTATTACACTTATCAAACAGGTACTCAATACACTTATGTAACAAAGCCAGTTATATCATTTACTGATGTTTCTGAATTGTCACTTTATGAGTGTGTTGACTACAACATTTATGGTGTTATTGGTTCTGGTATCATCCAACCTTCTAACATCTCTTATTTGAATGGCCTCTACTATACTTCTAGTGCTGGCCAACTATTAGCATTTAAAAACTCCACAACTTTCCAGATTTACACAGTTCAACCTTGTGATTCACCTGGACAAGTTATAGTTTACAACAATTCTTTTATTGGAGCCATTACTGCCTCCAATCAAACTATTTTGAATTTTAAGAGTCGCATTGCAACTCCTACATTCTACTATCATACAAATGCCACTAGTGTTCAAGGAAATTGTAATACTGCACCATTGCAGTTTTCCTCAATTGGCATTTGTCCTGATGGTTCTATTATGCAGGTCAACACTACTGTTGACACACTACCTGCAACAACAATTATTACCAGTGGTAATATTACAATACCACTGAATTTTACAATTTCAATTCAGGCTGAATACTTGCAAATACAAGCACAGCATACTGTTGTGGACTGTCAAACATATGTCTGCAATGGTAATGCAAAATGCTTGCAATTACTTCAGCAATATTCTACTGCCTGTTCAAACATTGAACAATCACTTACTATGTCTGCTCGACTTGACAATGCTGAAACGCTTGCCATGGTGCAGACTTCTACGCAAGGTTATCATCTGTCAAAGATTGAACAGCATGATAATCAATATAATTTAACTGCTATACTACCTAATAAACAAGGTGGTAGATCAGCAATTGAAGATCTACTTTTTGACAAAGTAGTTACAAATGGACTTGGCACTGTTGACCAGGATTACAAGGAATGCACCAAAGGTGTTTCACTTGCAGACCTGGCATGTGCTCAATATTATTCAGGTATTATGGTTCTTCCAGGCGTTGTTGACGCTGAAAAGATGGCCATGTACACTGCTTCACTTACAGGTGGTATGTTCTTTGGAGGACTTACCGCTGCTTCTTCCATACCTTTTTCCGTAGCTGTTCAAGCACGTCTTAATTATGTTGCACTTCAGACTGATGTGCTGCAGAAAAACCAACAAATACTTGCCAATAGCTTTAATCAGGCCATGGGCAATATAACACTTGCATTTTCTTCTGTTAATGATGCTCTTCAGCAAACCTCTGAAGTAATCCAAACAGTTGCAAATGCACTCAATAAAATTCAGGATGTTGTGAACAAGCAAGGCTCTGCTTTGAACCACCTCACCCTGCAGTTACAAAACAATTTTGATGCTATTTCACATTCAATAGCAGACATTTACGCTAGACTTGATGAAGTAGAAGCAAATCAGCAAGTCGATCGCCTCATTACAGGCAGGCTTGCTGCATTAAATGCATACGTCACTCAAGTTCTAACACAAATTTCCCAGCTTAAAGCCCAAAGGCAATTAGCTCAGGAGAAAATAAACGAGTGTGTGAAATCACAATCTGACAGATTTGGATTCTGCGGAAATGGTTCACACTTATTTTCTATTACACAGGCTGCACCCAATGGCATCCTGTTTTTGCACACTGTTCTAACACCAACTGACAGAGTCCAGGTTAATGCTATTGCTGGCATTTGTGTCTCTGATTCAGCTTTTGTGTTACGTGAACCTAACCTTGCTTTCTTTCAACATGATGGCAAGTGGTTAATTTCACCCCGCAGATTGTTTCAACCAAGACCGGCCACTGTTGCTGACTTTGTGCAAATACAGTCCTGTGAGGTTACTTTCTACAATACAACCTATGATGAGCTTCCACAATTAATCCCTGATTATGTGGATGTTAACCAGACGGTTTCTGACATATTAGCCAACAAAACAGATCCATCTTTGGACCTTAAGTTGGACATTTACAATCAAACTGTTTTAAACCTCTCTGCTGAAGTTGATGAACTTTTCCAGAGGGCTCAAAATCTTACTCTAATTTTCAAACAATTGGAGCAGTATATCAACAACATCAACAACACTCTAGTAGATTTAGAGTGGCTTAATAGAGTTGAAACCTACATTAAATGGCCTTGGTGGGTTTGGCTACTCATTGTGTTAGCCATAGCAGCCTTTGCCTGTATAGTTATTACCATCTTCCTTTGCACTGGTTGCTGTGGGGGATGTTTTGGTTGTTGTGGAGGCTGTTTTGGATTGTTCTCAAAGAGAAAATTTGACAGCGACCCGACACCAGTTTCTTTTAAATTAAAGGAATGGTAG

Protein

MQRVILICFITLASAARLVDRVFDALTFPNAHQYLRDTRQIQPRWLPSAEEPKSDGKGHFTQNVHRFAFLTNGSSPVDQIIRTTQPLLLRCPQWFGYNGSGNWVLKFNFSESNYCNDGYNYNGNKVVSHIRLIGAFLASPSVDYVFTLQTTSGSTYYLNCSTSQRPVGFDAEMQRNYCYVKTANYTQFIGILPERVADVTFSREGTFYVNGFGMGSFGQLARITVDKGALATFNHSWAYFVDEADVLLNITDSQIQGIVYCDKDLYDHLRCQQSSFSLTDGFYSTAKYTTNQQRKTIFVTLPKHTYTETISILPNISNPAYPDGSTNGPALGWWVGTMNVLFNNSQTLCVNSSFFMVNITFKCWLKPHPTKPSDEYKCIGGLPTAQVKLPDWPFAPYYSFSQLCLSSTYQVGYSTFYFQYWNQGTNKRWESKPLFYYTYQTGTQYTYVTKPVISFTDVSELSLYECVDYNIYGVIGSGIIQPSNISYLNGLYYTSSAGQLLAFKNSTTFQIYTVQPCDSPGQVIVYNNSFIGAITASNQTILNFKSRIATPTFYYHTNATSVQGNCNTAPLQFSSIGICPDGSIMQVNTTVDTLPATTIITSGNITIPLNFTISIQAEYLQIQAQHTVVDCQTYVCNGNAKCLQLLQQYSTACSNIEQSLTMSARLDNAETLAMVQTSTQGYHLSKIEQHDNQYNLTAILPNKQGGRSAIEDLLFDKVVTNGLGTVDQDYKECTKGVSLADLACAQYYSGIMVLPGVVDAEKMAMYTASLTGGMFFGGLTAASSIPFSVAVQARLNYVALQTDVLQKNQQILANSFNQAMGNITLAFSSVNDALQQTSEVIQTVANALNKIQDVVNKQGSALNHLTLQLQNNFDAISHSIADIYARLDEVEANQQVDRLITGRLAALNAYVTQVLTQISQLKAQRQLAQEKINECVKSQSDRFGFCGNGSHLFSITQAAPNGILFLHTVLTPTDRVQVNAIAGICVSDSAFVLREPNLAFFQHDGKWLISPRRLFQPRPATVADFVQIQSCEVTFYNTTYDELPQLIPDYVDVNQTVSDILANKTDPSLDLKLDIYNQTVLNLSAEVDELFQRAQNLTLIFKQLEQYINNINNTLVDLEWLNRVETYIKWPWWVWLLIVLAIAAFACIVITIFLCTGCCGGCFGCCGGCFGLFSKRKFDSDPTPVSFKLKEW

Uniprot

B6VDX8   B6VDY7   A0A2Z4EVX3   A0A2Z5XXW1   A0A2Z5XXU1   A0A346IMW2   + More
H9BR35   H9BQZ2   A0A2Z4EVX9   B6VDW9   A0A2Z4EVU6   A0A2R4STW6   B6VDW0   A0A4P8D759   A0A161CFJ6   H9BQX8   A0A145YP90   A0A075E3D7   A0A162JKN4   A0A4P8D784   A0A140ES46   A0A2S1NBZ5   A0A141ZUY3   A0A2Z5XXT6   A0A140ESG5   A0A4D6C7T8   A0A4D6C7P1   A0A1C9C4I6   A0A141ZV07   A0A141ZUZ5   A0A075E2S0   A0A075E3N9   A0A140ES74   A0A2Z5SR48   A0A075X774   X2F2I4   A0A097EU72   A0A2Z5SFY0   A0A1W6AKU9   A0A0D5Z8J4   X2G836   A0A1V0K0T1   A0A140ES60   A0A140ESD0   A0A141ZUU0   A0A2Z5XXS4   A0A140ES81   A0A4D6CAA4   A0A0D5Z9C5   A0A0E3Y594   A0A140ES53   A0A191TBW1   A0A4D6C7P4   A0A191TBW7   A0A060ADS8   A0A075E3P2   W8Q9Y7   A0A2Z5SIX0   A0A2U9A1Q6   A0A145PFU0   A0A2U9A1I4   A0A140ESA2   A0A0D5Z9D1   A0A089FVZ2   A0A060ADD4   A0A0E3N634   A0A140ES88   A0A140ERM4   A0A218PFD9   A0A140ESD7   A0A2Z5SPD8   A0A4V1DVY3   H9BQY5   A0A223DMX0   A0A2D0V093   A0A140ES95   A0A2H5A4K1   A0A0U2XU58   A0A060A825   A0A4P8D777   A0A0E3U229   A0A2U9A1G7   A0A4P8D758   A0A222YVF2   A0A2H5CUP5   X2GCV1   A0A140ESF8   A0A1S6L971   A0A161HR42   A0A286NGL5   A0A3G2YVT8   A0A140ESC3   A0A223DMX5   A0A2H5A4L6   A0A0D5Z9D9   A0A0K0PUM7   A0A2H4PWI8   A0A1P8VJU5   A0A4V1E460   A0A1P8VJV3  

Pubmed

18971277    29872066    30758768    22278237    27231358    29070693    + More
29695146    26982324    30941894    27424024    29621617    25759498    24723718    25740769    24964136    25153521    28345292    26584185    24723704    25817405    28758347    24744332    26337879   

EMBL

FJ376621    ACJ12053.1    FJ376622    ACJ12062.1    MG812377    AWV67125.1    + More
LC364346    BBC54861.1    LC364345    BBC54852.1    MH532440    AXP20281.1    JQ065049    AFD29244.1    JQ065044    AFD29201.1    MG812378    AWV67134.1    FJ376620    ACJ12044.1    MG812375    MG812376    AWV67107.1    AWV67116.1    MG242062    AVZ61082.1    FJ376619    ACJ12035.1    MK040454    QCI62295.1    KR060083    ALL74101.1    JQ065042    AFD29187.1    KU984334    AMW88197.1    KJ601780    AIB07807.1    KR060082    ALL74100.1    MK040453    MK040455    QCI62294.1    QCI62296.1    KR265847    AML40776.1    MG837130    MG837131    MG837132    MG837133    AWG96865.1    AWG96872.1    AWG96878.1    AWG96884.1    KU051643    KU051651    AMN91633.1    AMN91682.1    LC364344    BBC54842.1    KR265864    AML40895.1    MK478382    QBY26060.1    MK478383    QBY26061.1    KX118627    AOM53027.1    KU051655    AMN91706.1    KU051641    KU051642    KU051650    KU051652    KU051653    KU051654    KU051656    AMN91621.1    AMN91627.1    AMN91676.1    AMN91688.1    AMN91694.1    AMN91700.1    AMN91712.1    KJ601778    AIB07793.1    KJ601777    AIB07785.1    KR265851    AML40804.1    LC260043    BBA66340.1    KJ769231    AIH06857.1    KJ567050    AHM88400.1    KM820765    AIT11900.1    LC260039    BBA66312.1    KY364365    ARJ31774.1    KP995357    AKA42984.1    KJ462462    KJ584355    KJ584358    KJ620016    KT381613    AHN16220.1    AIA60973.1    AIA60994.1    AIA99518.1    ALJ32185.1    KY078906    KY363867    ARD25169.1    ATV90793.1    KR265849    KR265850    AML40790.1    AML40797.1    KR265859    LC260041    LC260042    LC260044    AML40860.1    BBA66326.1    BBA66333.1    BBA66347.1    KU051644    KU051645    KU051646    KU051647    KU051648    KU051649    AMN91639.1    AMN91645.1    AMN91651.1    AMN91657.1    AMN91663.1    AMN91670.1    LC364343    BBC54832.1    KR265852    AML40811.1    MK478380    QBY26058.1    KP995356    AKA42983.1    KP757890    AKC54428.1    KR265848    AML40783.1    KX022602    ANI85825.1    MK478381    QBY26059.1    KX022603    KX022604    KX022605    ANI85832.1    ANI85839.1    ANI85846.1    KJ584357    AIA60987.1    KJ601779    AIB07800.1    KJ481931    AHL45007.1    LC260040    BBA66319.1    MF461407    AWO67515.1    KT945050    AMW02952.1    MF461408    AWO67516.1    KR265855    AML40832.1    KP995358    KT371500    KR265856    KR265857    AKA42985.1    ALZ48519.1    AML40839.1    AML40846.1    KM012168    AIP90486.1    KJ584359    AIA61001.1    KP981395    AKA97938.1    KR265853    AML40818.1    KR150443    AML40604.1    LC260045    BAZ95609.1    KR265860    KR265861    AML40867.1    AML40874.1    LC260038    BBA66305.1    MK040449    QCI62290.1    JQ065043    AFD29194.1    KY926511    ASS83084.1    KU665558    AML83916.1    KR265854    AML40825.1    KY513725    AUG59164.1    KT336560    ALS54086.1    KJ584356    AIA60980.1    MK040447    QCI62288.1    KP757891    AKC54435.1    MF461409    AWO67517.1    MK040451    QCI62292.1    MF431743    ASR75145.1    MF041982    AUH28250.1    KJ569769    AHN16227.1    KR265863    AML40888.1    KY354363    KY354364    KX710201    KX710202    AQT34130.1    AQT34136.1    ASW22233.1    ASW22234.1    KU981059    KU981060    ANA78450.1    MF095123    ASY98687.1    MG832584    AYP31078.1    KR265858    AML40853.1    KY926512    ASS83086.1    KY513724    AUG59156.1    KP995359    AKA42986.1    KT266822    AKQ63083.1    KY436218    ATW75328.1    KX834351    APZ76690.1    MK005882    MK330605    QCO76963.1    QDP14518.1    KX834352    APZ76698.1   

Proteomes

UP000011786    UP000103579    UP000144236    UP000135406    UP000116644    UP000161619    + More
UP000103266    UP000112854    UP000172095    UP000097413    UP000118624    UP000108307    UP000129252    UP000160089    UP000171091    UP000139576    UP000126862    UP000114014    UP000122701    UP000124223    UP000149778    UP000152486    UP000156755    UP000136494    UP000154045    UP000118503    UP000141273    UP000144892    UP000172024    UP000148151    UP000161942    UP000104403    UP000102644    UP000116882    UP000120336    UP000150502    UP000152859    UP000147537    UP000115701    UP000158884    UP000131750    UP000117737    UP000137853    UP000103330    UP000130144    UP000163421    UP000118543    UP000169372    UP000174689    UP000132517    UP000170248    UP000147360    UP000100106   

Pfam

PF01600   Corona_S1
PF01601   Corona_S2

Interpro

IPR002552   Corona_S2
IPR002551   Corona_S1

ProteinModelPortal

B6VDX8   B6VDY7   A0A2Z4EVX3   A0A2Z5XXW1   A0A2Z5XXU1   A0A346IMW2   + More
H9BR35   H9BQZ2   A0A2Z4EVX9   B6VDW9   A0A2Z4EVU6   A0A2R4STW6   B6VDW0   A0A4P8D759   A0A161CFJ6   H9BQX8   A0A145YP90   A0A075E3D7   A0A162JKN4   A0A4P8D784   A0A140ES46   A0A2S1NBZ5   A0A141ZUY3   A0A2Z5XXT6   A0A140ESG5   A0A4D6C7T8   A0A4D6C7P1   A0A1C9C4I6   A0A141ZV07   A0A141ZUZ5   A0A075E2S0   A0A075E3N9   A0A140ES74   A0A2Z5SR48   A0A075X774   X2F2I4   A0A097EU72   A0A2Z5SFY0   A0A1W6AKU9   A0A0D5Z8J4   X2G836   A0A1V0K0T1   A0A140ES60   A0A140ESD0   A0A141ZUU0   A0A2Z5XXS4   A0A140ES81   A0A4D6CAA4   A0A0D5Z9C5   A0A0E3Y594   A0A140ES53   A0A191TBW1   A0A4D6C7P4   A0A191TBW7   A0A060ADS8   A0A075E3P2   W8Q9Y7   A0A2Z5SIX0   A0A2U9A1Q6   A0A145PFU0   A0A2U9A1I4   A0A140ESA2   A0A0D5Z9D1   A0A089FVZ2   A0A060ADD4   A0A0E3N634   A0A140ES88   A0A140ERM4   A0A218PFD9   A0A140ESD7   A0A2Z5SPD8   A0A4V1DVY3   H9BQY5   A0A223DMX0   A0A2D0V093   A0A140ES95   A0A2H5A4K1   A0A0U2XU58   A0A060A825   A0A4P8D777   A0A0E3U229   A0A2U9A1G7   A0A4P8D758   A0A222YVF2   A0A2H5CUP5   X2GCV1   A0A140ESF8   A0A1S6L971   A0A161HR42   A0A286NGL5   A0A3G2YVT8   A0A140ESC3   A0A223DMX5   A0A2H5A4L6   A0A0D5Z9D9   A0A0K0PUM7   A0A2H4PWI8   A0A1P8VJU5   A0A4V1E460   A0A1P8VJV3  

PDB

6B7N     E-value=0,     Score=2124