Strain

USA_MURINE_2009_NC_012936 (Region: USA;  Strain: Rat coronavirus Parker, complete genome.;  Date: 2009)

Gene

32 kD non-structural protein

Description

Annotated in NCBI,  32 kD non-structural protein

Location

NC_012936(+):21714-22511

GenBank Accession

YP_003029846.1

Full name

Non-structural protein 2a      

Alternative Name

ns2
32 kDa accessory protein
32 kDa non-structural protein
30 kDa accessory protein
30 kDa non-structural protein
p30

CDS

ATGGCTGCGAAAATGGCCTTTGCTGACAAGCCTAATCATTTCATAAACTTTCCTTTAGCCCAATTTAGTGGCTTTATGGGTAAGTATTTAAAGCTTCAGTCTCAACTTGTGGAAATGGGTTTAGACTGTAAATTACAGAAGGCACCACATGTTAGTATTACTATGCTTGATATTAAAGCAGATCAATACAAACAGGTGGAATTTGCAATACAAGAAATTTTAGATGATCTGGCAGCATATGAGGGATACATTGTCTTTGACAACCCCCATATGCTTGGCAGATGCCTTGTTCTTGATGTTAAAGGATTCGAAGAGTTGCATGTGGATATTGTTGAAATTCTCCGAAAGATGGGTTGCACTGCAGACCAATCCAGAGTATGGATTCCGCACTGCACTGTGGCCCAATTTGAGGAAGAAAAAGAAATAAATGCGATGCAATTCTATTATAAATTACCCTTCTACCTCAAGCATAATAACATATTAACTGATTCTAGGCTTGAGCTTGTGAAGATAGGTTCTTCCAAAATAGATGGGTTTTATTGTAGTGAGCTAAGTGTTTGGTGTGGTGAGAGACTTTGTTATAAGCCTCCAACACCCAAATTTAGCGATATATTTGGCTATTGCTGCATTGAGAAAATACGTGGTGATTTAGAAATTGGCGACCTACCCCAGGATGATGAAGAAGCGTGGGCCGAGCTAAGTTACCACTATCAAAGAAACACCTACTTCTTCAGATATGTGCATGATAATAGTATCTATTTTCGTATCGTATGTAGAATGAAGGGTTGTATGTGTTGA

Protein

MAAKMAFADKPNHFINFPLAQFSGFMGKYLKLQSQLVEMGLDCKLQKAPHVSITMLDIKADQYKQVEFAIQEILDDLAAYEGYIVFDNPHMLGRCLVLDVKGFEELHVDIVEILRKMGCTADQSRVWIPHCTVAQFEEEKEINAMQFYYKLPFYLKHNNILTDSRLELVKIGSSKIDGFYCSELSVWCGERLCYKPPTPKFSDIFGYCCIEKIRGDLEIGDLPQDDEEAWAELSYHYQRNTYFFRYVHDNSIYFRIVCRMKGCMC

Similarity

Belongs to the coronaviruses ns2a protein family.

Keywords

Host cytoplasm   Reference proteome   3D-structure  

Feature

chain  Non-structural protein 2a

Uniprot

I1TMH5   C6GHS0   Q9IKD3   I1TMG5   C0KYY7   C0KYR9   + More
C0KYZ8   C0KYU9   Q77NL8   I7AWC5   Q9PYA1   P26625   Q9J3F7   C0KYT9   C0KYT0   S5YTJ9   C0KYR0   C0KYX8   C3VPE8   C0KYW9   C0KYW0   S5Y3K7   S5Y9W7   H9BZX7   D7PJY0   Q77NL4   P19738   S5YGD3   A0A2D1CED5   D4QFJ9   A0A2S0SZ13   Q5ICX4   A0A3G3NHQ5   A0A3G3NH06   A0A411D566   B7U2R3   B7U2N1   B7U2M0   B7U2K9   B7U2Q2   Q9QAS3   A3E2F0   A0A5J6NRX2   A8HB14   A0A1S6KXQ6   A7BKC0   B8RIQ5   D0EY71   A0A1V0JAY5   A0A2R4STT5   B7TYG7   A0A2R4STS7   C6GHM3   C6GHN5   A4ZU06   C6GHP7   B7U2P2   A4ZTY4   A4ZU28   Q06BD9   A4ZTZ5   X2JJI7   A4ZU72   A4ZU61   A4ZU39   A4ZU50   X2JFA3   C6GHL1   Q0PL41   A0A0U2GR01   A0A2P1IQB3   D0EY81   D0EY91   A4ZTX3   P0C2R4   P0C2R3   Q80B88   A0A191URB9   Q91A27   A4ZU17   A0A2R4STR3   A0A191URA9   A0A3S7GY36   C6GHQ8   Q8V438   A0A1W6DZX8   U3M781   A0A5J6NRP1   A0A3S7H195   U3M7Y1   U3M7H8   U3M7A5   U3M773   U3M7V8   A0A0K0L8D2   A0A5J6NRJ7   A0A2D1QW74   A0A140E063   A0A1S5VGA7  

Pubmed

10882653    12970410    17079303    12663803    11502093    2168966    + More
2547994    11582515    10438865    15709029    8392595    17041219    20519394    16341254    2845655    9426441    15507445    18842722    9778786    17092595    31534035    17916374    17374765    19162098    17434558    17459444    24655427    17344285    26678874    29508550    23405345    27274850    11714968    25530469    28050020   

EMBL

JF792617    AFG25763.1    FJ938068    ACT11040.1    AF207551    JF792616    + More
AFG25753.1    FJ647226    ACN89770.1    FJ647219    ACN89701.1    FJ647227    ACN89780.1    FJ647222    ACN89728.1    AF208066    AAF69333.1    JX169867    AFO11515.1    AF201929    AAF19385.2    M34035    M28348    M57954    AF207902    AAF68921.1    FJ647221    ACN89713.1    FJ647220    ACN89708.1    KF268337    AGT17725.1    FJ647218    ACN89688.1    FJ647225    ACN89753.1    FJ884686    FJ884687    ACO72883.1    FJ647224    ACN89750.1    FJ647223    ACN89741.1    KF268338    AGT17736.1    KF268336    AGT17714.1    JQ173883    AFD97610.1    GU593319    ADI59788.1    AF208067    AY700211    AAF69343.1    AAU06354.1    M23256    AF029248    KF268339    AGT17747.1    MF618252    ATN37887.1    AB551247    BAJ04694.1    MF416379    AWB14618.1    AY771998    AAW47238.1    MH687970    AYR18614.1    MH687968    AYR18597.1    MH249786    QAY30018.1    FJ425189    ACJ66998.1    FJ425186    ACJ66972.1    FJ425185    ACJ66957.1    FJ425184    ACJ66947.1    FJ425188    FJ425190    ACJ66991.1    AF058942    DQ682406    ABG78746.1    MN514964    MN514965    MN514967    QEY10639.1    QEY10647.1    QEY10663.1    EU019216    ABV74052.1    KX432213    AQT26496.1    AB354579    BAF75629.1    EU999954    ACL12994.1    GQ918141    ACX46838.1    KX982264    MG757139    MG757140    MG757141    ARD05997.1    AVI15009.1    AVI15020.1    AVI15031.1    MH043953    MH043955    AVZ61107.1    AVZ61127.1    FJ415324    ACJ35484.1    MH043954    AVZ61117.1    FJ938064    ACT10993.1    FJ938065    ACT11005.1    EF424618    ABP38269.1    FJ938066    ACT11017.1    FJ425187    ACJ66982.1    EF424616    ABP38245.1    EF424620    ABP38289.1    DQ915164    ABI94001.2    EF424617    ABP38254.1    KF906250    KF906251    AHN64781.1    AHN64790.1    EF424624    ABP38335.1    EF424623    ABP38318.1    EF424621    ABP38301.1    EF424622    ABP38315.1    KF906249    AHN64772.1    FJ938063    ACT10981.1    DQ811784    ABG89287.1    KT368891    MF593476    ALA50078.1    ATI09447.1    MG518518    AVN88334.1    GQ918142    JX860640    ACX46848.1    AFW97358.1    GQ918143    ACX46858.1    EF424615    ABP38231.1    AF058944    AF058943    U00735    KU558923    ANJ04726.1    AF391541    EF424619    ABP38277.1    MH043952    AVZ61097.1    KU558922    ANJ04715.1    MG757142    AVI15042.1    FJ938067    ACT11028.1    AF391542    KY967360    MF314143    MK327281    MN026165    ARK08668.1    AVQ05262.1    QBP84757.1    QDH43724.1    KF530085    KF530087    KF923913    KF923915    AGT51658.1    AGT51678.1    AIV41937.1    AIV41949.1    MN514963    QEY10631.1    MG757138    AVI14998.1    KF530075    AGT51559.1    KF530060    AGT51410.1    KF530092    AGT51728.1    KF530077    KF530083    KF530086    AGT51578.1    AGT51638.1    AGT51668.1    KF530064    KF530072    KF530078    KF530080    KP198610    KP198611    KY014282    AGT51449.1    AGT51529.1    AGT51588.1    AGT51608.1    AJC98125.1    AJC98132.1    ATP16765.1    KF923898    AIV41848.1    MN514962    QEY10623.1    KY014281    ATP16755.1    KU131570    AMK59675.1    KX538974    AQN78734.1   

Proteomes

UP000161770    UP000173347    UP000175084    UP000148943    UP000158592    UP000138757    + More
UP000142874    UP000143567    UP000149957    UP000139707    UP000007193    UP000163097    UP000133456    UP000098534    UP000171340    UP000151686    UP000119015    UP000180349    UP000180350    UP000167944    UP000159025    UP000112338    UP000164259    UP000118088    UP000117254    UP000113498    UP000155907    UP000007192    UP000171975    UP000154289    UP000133443    UP000140344    UP000104294    UP000174569    UP000102696    UP000148210    UP000168103    UP000158296    UP000136745    UP000139966    UP000173415    UP000162935    UP000158327    UP000127099    UP000170940    UP000154814    UP000151273    UP000145507    UP000149260    UP000147178    UP000163913    UP000136116    UP000139235    UP000121258    UP000172225    UP000147981    UP000158231    UP000137675    UP000121953    UP000007554    UP000008570    UP000134650    UP000164707    UP000008571    UP000105266    UP000136628    UP000165173    UP000166197    UP000149702    UP000167348    UP000126877    UP000096360    UP000136788    UP000159503    UP000100971    UP000115705    UP000133796    UP000134871    UP000154668    UP000165185    UP000142982    UP000147591   

PRIDE

P26625    Q8V438   

Pfam

PF05213   Corona_NS2A

Interpro

IPR039573   NS2A-like
IPR007878   Coronavirus_NS2A
IPR009097   Cyclic_Pdiesterase

SUPFAM

SSF55144   SSF55144

ProteinModelPortal

I1TMH5   C6GHS0   Q9IKD3   I1TMG5   C0KYY7   C0KYR9   + More
C0KYZ8   C0KYU9   Q77NL8   I7AWC5   Q9PYA1   P26625   Q9J3F7   C0KYT9   C0KYT0   S5YTJ9   C0KYR0   C0KYX8   C3VPE8   C0KYW9   C0KYW0   S5Y3K7   S5Y9W7   H9BZX7   D7PJY0   Q77NL4   P19738   S5YGD3   A0A2D1CED5   D4QFJ9   A0A2S0SZ13   Q5ICX4   A0A3G3NHQ5   A0A3G3NH06   A0A411D566   B7U2R3   B7U2N1   B7U2M0   B7U2K9   B7U2Q2   Q9QAS3   A3E2F0   A0A5J6NRX2   A8HB14   A0A1S6KXQ6   A7BKC0   B8RIQ5   D0EY71   A0A1V0JAY5   A0A2R4STT5   B7TYG7   A0A2R4STS7   C6GHM3   C6GHN5   A4ZU06   C6GHP7   B7U2P2   A4ZTY4   A4ZU28   Q06BD9   A4ZTZ5   X2JJI7   A4ZU72   A4ZU61   A4ZU39   A4ZU50   X2JFA3   C6GHL1   Q0PL41   A0A0U2GR01   A0A2P1IQB3   D0EY81   D0EY91   A4ZTX3   P0C2R4   P0C2R3   Q80B88   A0A191URB9   Q91A27   A4ZU17   A0A2R4STR3   A0A191URA9   A0A3S7GY36   C6GHQ8   Q8V438   A0A1W6DZX8   U3M781   A0A5J6NRP1   A0A3S7H195   U3M7Y1   U3M7H8   U3M7A5   U3M773   U3M7V8   A0A0K0L8D2   A0A5J6NRJ7   A0A2D1QW74   A0A140E063   A0A1S5VGA7  

PDB

4Z5V     E-value=4.81847e-107,     Score=989