Strain

USA_MURINE_2009_NC_012936 (Region: USA;  Strain: Rat coronavirus Parker, complete genome.;  Date: 2009)

Gene

internal protein

Description

Annotated in NCBI,  internal protein

Location

NC_012936(+):29667-30290

GenBank Accession

YP_003029853.1

Full name

Protein I      

Alternative Name

Accessory protein N2
N internal ORF protein
Protein in nucleocapsid ORF
N2 protein

CDS

ATGGAATCCTCAAGAAGACCACTTGGGCTGACCAAACCGAGCGTGGACAAAATAATGGCAATAGAGGCAGAAGGAATCAGCCCAAGCAGACTGCAACTACTCAGCCCAATACCGGGAGTGTGGTTCCCCATTACTCTTGGTTTTCGGGCATTACCCAATTCCAGAAGGGAAAAGAGTTCCAGTTTGCAGGTGGACAAGGAGTGCCTATTGCCAATGGAATCCCATCTTCTGAGCAAAAGGGATATTGGTATAGACACAACCGTCGTTCTTTTAAAACACCTGACGGGCAGCAGAAGCAATTACTCCCCAGATGGTATTTTTACTATCTTGGGACGGGCCCCCATGCTGGAGCCAGTTTCGGAGACAGCATTGAGGGAGTCTTCTGGGTTGCAAATAGTCAGGCGGATACCAATACCTCTGCTGACATTGTTGAAAGGGACCCAAGTAGCCATGAGGCTATTCCTACTAGGTTTGCGCCCGGTACGGTATTGCCTCAGGGTTTCTATGTTGAAGGCTCGGGAAGGTCTGCACCTGCTAGTCGATCTGGTTCGCGGTCACAATCCCGTGGGCCAAATAATCGCGCTAGAAGCAGTTCCAACCAGCGCCAGCCTGCCTCTACTGTAA

Protein

MESSRRPLGLTKPSVDKIMAIEAEGISPSRLQLLSPIPGVWFPITLGFRALPNSRREKSSSLQVDKECLLPMESHLLSKRDIGIDTTVVLLKHLTGSRSNYSPDGIFTILGRAPMLEPVSETALRESSGLQIVRRIPIPLLTLLKGTQVAMRLFLLGLRPVRYCLRVSMLKAREGLHLLVDLVRGHNPVGQIIALEAVPTSASLPLL

Function

Structural protein that is not essential for the viral replication either in tissue culture or in its natural host.
Structural protein that is not essential for the viral replication either in tissue culture or in its natural host. Confers a small growth advantage.

Miscellaneous

The gene encoding this protein is included within the N gene (alternative ORF).

Similarity

Belongs to the coronavirus I protein family.
Belongs to the coronaviruses I protein family.

Keywords

Virion   Reference proteome  

Feature

chain  Protein I

Uniprot

C6GHS7   I1TMH7   Q9IKC5   I1TMG7   V5N6N0   P69615   + More
A0A2D1CEC6   C0KYT6   C0KYR6   C0KYY4   C0KZ05   C3VPF4   S5YTN5   P69614   A0A2D1CEE6   P18455   A7U550   P18452   P0C5A5   Q08616   A0A0K2RVK1   A0A0K2RVK8   U3M6B3   A8R4E0   U3M6W1   U3M7P5   A0A1V0PKZ2   U3M7N5   A0A482KBN8   U3M6Z9   A0A482KAY3   Q4VID0   U3M6W8   U3M7Q5   U3M7P7   U3M7L7   Q9QAR0   U3M7M7   U3M7N7   A0A1L7H9A9   Q4VID9   A0A482K8U2   A0A2P1IQA6   U3M7P1   A0A482KB63   A0A5B9MVF9   A0A482KAX6   P26626   Q77NC1   P10525   Q9QAR7   X2JQH1   A0A0U2GRE6   C6GHR7   Q6W357   B7U2S2   F4MH10   B7U2T4   Q9QAQ4   Q8V431   C6GHN2   C6GHP4   C6GHQ5   B8RIR4   Q91A21   A8HB23   A3E2F8   C6GHM0   A0A191URC2   Q06BD3   D0EY90  

Pubmed

10882653    2171216    10438865    15709029    17079303    8392595    + More
6687635    9426441    8995618    20631137    6308569    8390823    26271151    17706262    15914223    15280490    15650185    9778786    29508550    1856695    11774548    3029965    24655427    26678874    18842722    11714968    19162098    17916374    17092595    27274850    17459444    23405345   

EMBL

FJ938068    ACT11047.1    JF792617    AFG25765.1    AF207551    JF792616    + More
AFG25755.1    KF850449    AHA83613.1    M35254    MF618252    ATN37893.1    FJ647220    ACN89706.1    FJ647218    ACN89684.1    FJ647225    ACN89752.1    FJ647227    ACN89776.1    FJ884686    FJ884687    ACO72889.1    KF268336    KF268337    KF268338    KF268339    AGT17722.1    AGT17733.1    AGT17744.1    AGT17755.1    X00509    M35256    AF029248    MF618253    ATN37903.1    M35255    EF682498    ABS87270.1    M35253    X00990    X63538    CAA45100.1    LC061272    BAS18851.1    LC061273    LC061274    BAS18861.1    BAS18871.1    KF530059    AGT51407.1    EF446615    ABP87996.1    KF530062    KF530075    AGT51436.1    AGT51566.1    KF530093    AGT51745.1    KY554972    KY554973    ARE29989.1    ARE29998.1    KF530088    AGT51695.1    MK303623    MK303624    QBP84745.1    QBP84754.1    KF530069    AGT51506.1    MK303619    QBP84709.1    AY903460    AY585228    AY585229    AY391777    KF530063    AGT51446.1    KF530098    KY554974    KY554975    MK303621    MN310476    AGT51795.1    ARE30007.1    ARE30016.1    QBP84727.1    QEG03809.1    KF530094    AGT51755.1    KF530079    AGT51605.1    AF058943    KF530084    AGT51655.1    KF530067    KF530071    KF530076    KF530082    KF530089    AGT51486.1    AGT51526.1    AGT51575.1    AGT51635.1    AGT51705.1    KY369905    KY369906    KY369907    KY684759    KY967358    KY967359    KY967361    KY983583    KY983585    KY983588    MN306036    MN306041    MN306042    MN306053    MN310478    APU51922.1    APU51932.1    APU51937.1    ARA15426.1    ARK08656.1    ARK08666.1    ARK08684.1    ARU07573.1    ARU07592.1    ARU07615.1    QEG03745.1    QEG03762.1    QEG03772.1    QEG03799.1    QEG03819.1    AY903459    KF530068    KF530070    KF530081    AAX85674.1    AGT51496.1    AGT51516.1    AGT51625.1    MK303620    QBP84718.1    MG518518    AVN88330.1    KF530091    AGT51725.1    MK303622    QBP84736.1    MN306043    QEG03782.1    MK303625    QBQ01844.1    AF220295    U00735    AF058942    KF906249    KF906250    KF906251    AHN64779.1    AHN64788.1    AHN64797.1    KT368891    MF593476    ALA50085.1    ATI09454.1    FJ938067    ACT11037.1    AY316299    AAQ67203.1    FJ425189    ACJ67007.1    DQ811784    AED01932.1    FJ425190    ACJ67019.1    AF058944    AF391542    FJ938064    ACT11002.1    FJ938065    ACT11014.1    FJ938066    ACT11025.1    EU999954    ACL13002.1    AF391541    EU019216    ABV74061.1    DQ682406    ABG78754.1    FJ938063    ACT10990.1    KU558922    ANJ04724.1    DQ915164    ABI94004.1    GQ918142    JX860640    ACX46857.1    AFW97367.1   

Proteomes

UP000173347    UP000161770    UP000175084    UP000098534    UP000151686    UP000119015    + More
UP000138757    UP000180349    UP000180350    UP000112338    UP000164259    UP000171340    UP000171975    UP000007192    UP000007193    UP000166748    UP000130220    UP000155347    UP000103372    UP000149702    UP000150595    UP000155676    UP000007552    UP000100580    UP000159995    UP000180344    UP000172586    UP000168290    UP000104124    UP000143194    UP000100004    UP000097333    UP000109543    UP000114034    UP000119922    UP000122365    UP000117387    UP000119762    UP000140401    UP000161137    UP000160021    UP000008572    UP000007554    UP000121258    UP000145507    UP000149260    UP000158231    UP000164707    UP000133443    UP000147981    UP000102696    UP000008571    UP000136745    UP000139966    UP000162935    UP000008570    UP000172225    UP000154814    UP000137675   

PRIDE

Q9IKC5    P69615    P69614    P18452    Q4VID0    Q9QAR0    + More
P26626    P10525    Q9QAR7   

Pfam

PF03187   Corona_I

Interpro

IPR004876   Corona_nucI

ProteinModelPortal

C6GHS7   I1TMH7   Q9IKC5   I1TMG7   V5N6N0   P69615   + More
A0A2D1CEC6   C0KYT6   C0KYR6   C0KYY4   C0KZ05   C3VPF4   S5YTN5   P69614   A0A2D1CEE6   P18455   A7U550   P18452   P0C5A5   Q08616   A0A0K2RVK1   A0A0K2RVK8   U3M6B3   A8R4E0   U3M6W1   U3M7P5   A0A1V0PKZ2   U3M7N5   A0A482KBN8   U3M6Z9   A0A482KAY3   Q4VID0   U3M6W8   U3M7Q5   U3M7P7   U3M7L7   Q9QAR0   U3M7M7   U3M7N7   A0A1L7H9A9   Q4VID9   A0A482K8U2   A0A2P1IQA6   U3M7P1   A0A482KB63   A0A5B9MVF9   A0A482KAX6   P26626   Q77NC1   P10525   Q9QAR7   X2JQH1   A0A0U2GRE6   C6GHR7   Q6W357   B7U2S2   F4MH10   B7U2T4   Q9QAQ4   Q8V431   C6GHN2   C6GHP4   C6GHQ5   B8RIR4   Q91A21   A8HB23   A3E2F8   C6GHM0   A0A191URC2   Q06BD3   D0EY90  

PDB

6QM8     E-value=3.06735,     Score=67