Strain

CHINA_AVIAN_2007_NC_016991 (Region: China: Hong Kong;  Strain: White-eye coronavirus HKU16, complete genome.;  Date: 2007)

Gene

spike glycoprotein

Description

Annotated in NCBI,  spike glycoprotein

Location

NC_016991(+):19379-22918

GenBank Accession

YP_005352838.1

CDS

ATGCAGAGAATTATATTAATTTCCACCATTTTGTATTGTGCTAGAGCTTTAACTTTAGCAGACAAGATGTTGGACCTCTTAACTTTTCCTGGAGCTCATCACTATTTTAGAGGAGATCTCCAGACCCTACACTCTCGCATAAGTGCTGAATCATATTCAGTCAACCCTTATGACCAATATAATTATCAGACTGATTCTGACTATTATATTAATAAGAGTGTGCATTTAATTGCACCCCTTACCAATCTAACCCTGCCTATATCTGGTCTACACAGATCTATGCAACCACTACGTGTAGGTTGTATATTTGGTGCATCCAATAAAATAGACCAGGGTTTTACTATTAGTGGCATGACATACCCATTGGCATACTGTGTGCCACCATTCTATCAAGTCACAAATGTAACATATGATGCCATGCGTCTACTTTTTGCATTTGCTGACTTAAATTCTACAGGCGACTTTCTTCGCATTAACACTAAAACCATGGGCATGCTGAATGTTTCATGTTCAGCTTCCCCCACACCATTAGGCCATCAAGATGCTGATCGCACTTTCTATGGCTACAATAAACAATTATACTGTTACCTAGACACCCCTGCTGGTATGCAGTATATGGGTCCACTGCCAGCCAATTTAACAGAGATAACTCTGTTTAGGACTGGACAAATTTATACCAATGGCTTTCACCTTGGTACCATACCTTCAGAGCTAACATATGTCTACCTAGACAAGTTAGCTTTCCAAAATAAAACTGTGTGTATGATGGCTAATCTCACCGACACACTCATTACTTTAAATCATACTGTTATTCAACAGGTTACCTATTGTGAGAAGGATGCAGTGCAGGCTTTAGCTTGCCAGCAATCTACTCATCAATTGCAGGATGGTTTTTATTCTGACCCAGCACCTGCTGTTAACAACCTACCAAAAACACTTGTAACACTACCAAAGATAGCAGAATCCTCTACATTACAAATTAATGTCTCTGCTACATATAGCTATGGTAGTGCCTCAGGTTCCATTAAACTATCCTATAATGGATCCAGTAATAACTCTCATTGTGTTCAAACACCCTACTTCAAGCTTGAACAAAATCTAGTTTGTAGTGGTGGCTGTTCTGTACGCATTGAAACTCTCACATGCCCTTTTGATCTTAATGCAGTCTCTAATGGCATGTCATTTCAACAATTCTGTGTTAGCACTGTATCTGGCCAATGCAGCATGCAAGCCATTGTTAACACAGGTCAACCCTGGGGTTATGTAACCTCCACACTTTATGTAACTTATGTTGAAGGGCAATCCTTCACAGGAACCTCCAGTGATCAAATTGAGGATCTCACTGTTTTACATCTAGACCAGTGCACTTCTTACACCATTTATGGAGTATCTGGCACTGGTGTTATAACCTTATCTGACTTACAACTACCCCACGGCATCACATTTCGAGCTGCCAATGGAGAGTTGTCTGCTTTTAAGAATACTACTACTGGTGATGTTTACACTATACAACCGTGTTCATTGCCAGCACAATTAGCAATTATTGACTCCACCATTGTAGGAGCTATTACATCTACTAATGAGTCCTATGGTTTTTCTAACACCATTGTGACTCCCACATTCTATTATTCAACCAATGCGACCAGCAACTGTACTGCACCTAAAATCTCTTATGGAGAATTGGGTGTCTGTGCTGATGGTTCGATTGGAGCTGTTTCACAATTACAGGATTCCAAACCATCCATTGTTCCTTTATACACTGGAGAAATTGAAATTCCTGCATCTTTCAAACTGTCTGTTCAGACTGAATATCTACAGGTTCAAACTGAGCAGGTGGTTATAGATTGTCCTAAGTATGTCTGTAATGGTAACCCTCGCTGCTTACAATTGCTAGCGCAGTATACCTCAGCATGCTCAAACATTGAGAGTGCACTTCACTCGTCAGCACAGCTTGACTCACGTGAAATCACTATGATGTTTCAAACTTCTAGTCAGTCTGTTGAGTTGGCAAACATCACCAACTTCCAGGGTGACTATAATTTTAGTATGATTTTACCTACACTACCGGGTAAAGACAGATCAGCCATTGAGGACCTCCTTTTTGATAAGGTGGTTACCAATGGTTTAGGTACTGTGGATCAGGATTATAAATCCTGTTCTAAGGGTATAGCTGTCGCAGACTTAGTCTGTGCACAATACTATAATGGCATCATGGTGCTTCCTGGTGTTGTAGATGCTGAAAAAATGGCTATGTACACTGGATCTCTCACTGGCGCCATGGTGTTTGGTGGACTTACTGCAGCTGCTGCTATACCTTTTTCAACAGCTGTACAAGCCCGTTTAAATTATGTGGCACTTCAAACAAATGTGCTACAAGAAAATCAGAAGATTCTTGCTGAATCTTTTAATCAAGCAGTGGGTAATATTTCTCTTGCCCTTAGCAATGTCAACACTGCTATACAGCAAACCTCTGAAGCCTTACTCACAGTCTCAAATGCTATTAACAAAATACAAACAGTTGTAAACCAGCAGGGTGAAGCCCTTGCACACCTTACTGCACAACTGTCACAAAATTTCCAGGCGATTTCGACGTCTATACAAGACATATATAATCGCCTTGACCAAATACAAGCAGATCAACAGGTAGATCGTCTTATTACCGGACGTCTGGCTGCTCTCAATGCTTATGTAACACAACTTCTTAATAAGCTTTCCCAGGTTAGACAATCTAGGATTTTAGCTGAACAGAAGATTAATGAGTGTGTAAAATCACAATCCTCTCGTTATGGGTTTTGTGGTAATGGCACACACTTATTCTCACTTACACAAGCAGCGCCTAATGGCATATTCTTTATGCATGCTGTTCTTGTACCCCAAACATTCCAGCCTGTTGTTGCATATGCTGGTATTTGTGTAGACGGTTATGGTTATTCATTGCAACCGCAATTAGTTCTGTACAATCTTAATGATTCATACAGAATTACTCCCCGAAATATGTTTGAACCACGGACTCCTACTCAGTCCGTTTTCATTCCACTAACTACTTGCAGTGTTGACTTTGTAAATGTTACGGCCAACAATGTTTCCATTATTATACCAGACTATGTTGATGTTAATAAAACTGTGTCTGATATTATAAATGGTCTCCCGAACTATTCTTATCCAGAATTGTCGCTGGACCGTTTTAACCATACAATTCTAAATCTCTCCCAGGAGATTGAGGATTTACAAATACGATCACAAAATCTTAGTGCTACTGCGGAACTTCTGCAGCAGTACATTGACAATCTTAACAATACTCTAGTAGACCTTGAGTGGCTTAATAGAGTTGAAACATATTTAAAGTGGCCATGGTACATATGGCTTCTCATTTTCTTAGCAATAGCAGCATTTGCAACAATACTTGTCACTATCTTTTTGTGCACAGGATGTTGCGGAGGCTGTTTTGGGTGTTGTGGAGGCTGTTTTGGCCTGTTTTCTAAGAAACGTCGCCTTAGCAGTGAACCGACACCAGTCTCATTTAAATTAAAGGAATGGTAG

Protein

MQRIILISTILYCARALTLADKMLDLLTFPGAHHYFRGDLQTLHSRISAESYSVNPYDQYNYQTDSDYYINKSVHLIAPLTNLTLPISGLHRSMQPLRVGCIFGASNKIDQGFTISGMTYPLAYCVPPFYQVTNVTYDAMRLLFAFADLNSTGDFLRINTKTMGMLNVSCSASPTPLGHQDADRTFYGYNKQLYCYLDTPAGMQYMGPLPANLTEITLFRTGQIYTNGFHLGTIPSELTYVYLDKLAFQNKTVCMMANLTDTLITLNHTVIQQVTYCEKDAVQALACQQSTHQLQDGFYSDPAPAVNNLPKTLVTLPKIAESSTLQINVSATYSYGSASGSIKLSYNGSSNNSHCVQTPYFKLEQNLVCSGGCSVRIETLTCPFDLNAVSNGMSFQQFCVSTVSGQCSMQAIVNTGQPWGYVTSTLYVTYVEGQSFTGTSSDQIEDLTVLHLDQCTSYTIYGVSGTGVITLSDLQLPHGITFRAANGELSAFKNTTTGDVYTIQPCSLPAQLAIIDSTIVGAITSTNESYGFSNTIVTPTFYYSTNATSNCTAPKISYGELGVCADGSIGAVSQLQDSKPSIVPLYTGEIEIPASFKLSVQTEYLQVQTEQVVIDCPKYVCNGNPRCLQLLAQYTSACSNIESALHSSAQLDSREITMMFQTSSQSVELANITNFQGDYNFSMILPTLPGKDRSAIEDLLFDKVVTNGLGTVDQDYKSCSKGIAVADLVCAQYYNGIMVLPGVVDAEKMAMYTGSLTGAMVFGGLTAAAAIPFSTAVQARLNYVALQTNVLQENQKILAESFNQAVGNISLALSNVNTAIQQTSEALLTVSNAINKIQTVVNQQGEALAHLTAQLSQNFQAISTSIQDIYNRLDQIQADQQVDRLITGRLAALNAYVTQLLNKLSQVRQSRILAEQKINECVKSQSSRYGFCGNGTHLFSLTQAAPNGIFFMHAVLVPQTFQPVVAYAGICVDGYGYSLQPQLVLYNLNDSYRITPRNMFEPRTPTQSVFIPLTTCSVDFVNVTANNVSIIIPDYVDVNKTVSDIINGLPNYSYPELSLDRFNHTILNLSQEIEDLQIRSQNLSATAELLQQYIDNLNNTLVDLEWLNRVETYLKWPWYIWLLIFLAIAAFATILVTIFLCTGCCGGCFGCCGGCFGLFSKKRRLSSEPTPVSFKLKEW

Uniprot

H9BQZ2   B6VDW0   A0A2Z5XXU1   A0A2Z5XXW1   B6VDW9   A0A2R4STW6   + More
B6VDY7   A0A4P8D759   A0A2Z4EVX3   A0A222YVF2   A0A2U9A1I4   A0A2D0V093   A0A223DMX5   A0A4V1E460   A0A161HR42   A0A223DMX0   A0A2H5CUP5   H9BQY5   A0A0E3Y594   A0A0E3Y622   A0A0D5Z8J4   A0A3G2YVT8   A0A1Z4F681   A0A2U9A1G7   A0A2U9A1Q6   A0A3G4RHU8   A0A145YP90   A0A343ERC8   A0A1S6K7S2   A0A286NGL5   A0A1V0K0T0   A0A060ADD4   A0A191TBW7   A0A140ESD7   A0A4P8D758   A0A2H5A4L6   A0A2R3ZDM3   A0A2Z5SFY0   A0A4D6C7P1   A0A220W0L3   A0A346JFF5   A0A097EU72   A0A191TBW1   A0A0U2XU58   X2G836   A0A140ESD0   A0A075X774   A0A075E2S0   A0A075E3N9   A0A0K2D282   A0A161CFJ6   A0A1Y0DA17   A0A140ESG5   A0A141ZUZ5   X2F2I4   A0A140ES81   A0A140ES46   A0A3R5UH96   A0A060ADS8   A0A075E3D7   A0A4D6CAA4   A0A140ES88   A0A145PFU0   A0A2Z5SPD8   A0A162JKN4   A0A1C9C4I6   A0A2Z5SR48   A0A2U9A1Q8   A0A0D5Z9D1   A0A2Z5SIX0   A0A0E3U229   A0A166XB95   X2GCV1   A0A089FVZ2   A0A075E3P2   W8Q9Y7   A0A0E3N634   A0A4D6C7T8   A0A4V1DVY3   A0A1V0K0T3   A0A141ZUY3   A0A140ERM4   A0A140ES95   A0A1W6AKU9   A0A141ZV07   A0A2H4PWI8   A0A4D6C7P4   A0A140ES60   A0A346IMW2   A0A140ESH2   A0A140ES53   A0A141ZUU0   A0A5C0PWA5   A0A140ES74   A0A4P8D772   A0A060A825   H9BQX8   A0A0D5Z9D9   A0A1V0K0S5   A0A514C920  

Pubmed

22278237    18971277    29872066    28758347    26584185    25740769    + More
28634353    27231358    28345292    25153521    29569144    29621617    30941894    24964136    25759498    26250097    26982324    24723718    29070693    27424024    24744332    24723704    25817405    30758768   

EMBL

JQ065044    AFD29201.1    FJ376619    ACJ12035.1    LC364345    BBC54852.1    + More
LC364346    BBC54861.1    FJ376620    ACJ12044.1    MG242062    AVZ61082.1    FJ376622    ACJ12062.1    MK040454    QCI62295.1    MG812377    AWV67125.1    MF431743    ASR75145.1    MF461408    AWO67516.1    KU665558    AML83916.1    KY926512    ASS83086.1    MK005882    MK330605    QCO76963.1    QDP14518.1    KU981059    KU981060    ANA78450.1    KY926511    ASS83084.1    MF041982    AUH28250.1    JQ065043    AFD29194.1    KP757890    AKC54428.1    KP757892    AKC54442.1    KP995357    AKA42984.1    MG832584    AYP31078.1    LC216914    BAY00723.1    MF461409    AWO67517.1    MF461407    AWO67515.1    MH715491    AYU65233.1    KU984334    AMW88197.1    KY293678    ASK86341.1    KX443143    AQS99154.1    MF095123    ASY98687.1    KY078907    ARD25170.1    KJ584359    AIA61001.1    KX022603    KX022604    KX022605    ANI85832.1    ANI85839.1    ANI85846.1    KR265860    KR265861    AML40867.1    AML40874.1    MK040451    QCI62292.1    KY513724    AUG59156.1    MF280390    AVR48519.1    LC260039    BBA66312.1    MK478383    QBY26061.1    KY293677    ASK86334.1    MH708123    MH708124    MH708125    AXP32216.1    AXP32223.1    AXP32230.1    KM820765    AIT11900.1    KX022602    ANI85825.1    KT336560    ALS54086.1    KJ462462    KJ584355    KJ584358    KJ620016    KT381613    AHN16220.1    AIA60973.1    AIA60994.1    AIA99518.1    ALJ32185.1    KR265859    LC260041    LC260042    LC260044    AML40860.1    BBA66326.1    BBA66333.1    BBA66347.1    KJ769231    AIH06857.1    KJ601778    AIB07793.1    KJ601777    AIB07785.1    KR131621    ALA13745.1    KR060083    ALL74101.1    KY496312    ART84222.1    KR265864    AML40895.1    KU051641    KU051642    KU051650    KU051652    KU051653    KU051654    KU051656    AMN91621.1    AMN91627.1    AMN91676.1    AMN91688.1    AMN91694.1    AMN91700.1    AMN91712.1    KJ567050    AHM88400.1    KR265852    AML40811.1    KR265847    AML40776.1    MK248485    QAA06990.1    KJ584357    AIA60987.1    KJ601780    AIB07807.1    MK478380    QBY26058.1    KR265853    AML40818.1    KT945050    AMW02952.1    LC260038    BBA66305.1    KR060082    ALL74100.1    KX118627    AOM53027.1    LC260043    BBA66340.1    MF461406    AWO67514.1    KP995358    KT371500    KR265856    KR265857    AKA42985.1    ALZ48519.1    AML40839.1    AML40846.1    LC260040    BBA66319.1    KP757891    AKC54435.1    KU981061    KU981062    ANA78457.1    KJ569769    AHN16227.1    KM012168    AIP90486.1    KJ601779    AIB07800.1    KJ481931    AHL45007.1    KP981395    AKA97938.1    MK478382    QBY26060.1    MK040449    QCI62290.1    KY078911    ARD25174.1    KU051643    KU051651    AMN91633.1    AMN91682.1    KR150443    AML40604.1    KR265854    AML40825.1    KY364365    ARJ31774.1    KU051655    AMN91706.1    KY436218    ATW75328.1    MK478381    QBY26059.1    KR265849    KR265850    AML40790.1    AML40797.1    MH532440    AXP20281.1    KR265865    AML40902.1    KR265848    AML40783.1    KU051644    KU051645    KU051646    KU051647    KU051648    KU051649    AMN91639.1    AMN91645.1    AMN91651.1    AMN91657.1    AMN91663.1    AMN91670.1    MN064712    QEJ80684.1    KR265851    AML40804.1    MK040445    QCI62286.1    KJ584356    AIA60980.1    JQ065042    AFD29187.1    KP995359    AKA42986.1    KY078905    ARD25168.1    MK355396    QDH76188.1   

Proteomes

UP000135406    UP000161619    UP000116644    UP000103579    UP000170248    UP000103330    + More
UP000172024    UP000156468    UP000112854    UP000147537    UP000117737    UP000137853    UP000114014    UP000163421    UP000122701    UP000124223    UP000149778    UP000152486    UP000156755    UP000118503    UP000139576    UP000129252    UP000160089    UP000151351    UP000118624    UP000108307    UP000126862    UP000144892    UP000097413    UP000161942    UP000172095    UP000158884    UP000120336    UP000150502    UP000169372    UP000180351    UP000180352    UP000174689    UP000152859    UP000104403    UP000102644    UP000115701    UP000131750    UP000130144    UP000136494    UP000154045    UP000162784    UP000148151    UP000141273    UP000171091    UP000118543    UP000103266   

Pfam

PF01600   Corona_S1
PF01601   Corona_S2

Interpro

IPR002551   Corona_S1
IPR002552   Corona_S2

ProteinModelPortal

H9BQZ2   B6VDW0   A0A2Z5XXU1   A0A2Z5XXW1   B6VDW9   A0A2R4STW6   + More
B6VDY7   A0A4P8D759   A0A2Z4EVX3   A0A222YVF2   A0A2U9A1I4   A0A2D0V093   A0A223DMX5   A0A4V1E460   A0A161HR42   A0A223DMX0   A0A2H5CUP5   H9BQY5   A0A0E3Y594   A0A0E3Y622   A0A0D5Z8J4   A0A3G2YVT8   A0A1Z4F681   A0A2U9A1G7   A0A2U9A1Q6   A0A3G4RHU8   A0A145YP90   A0A343ERC8   A0A1S6K7S2   A0A286NGL5   A0A1V0K0T0   A0A060ADD4   A0A191TBW7   A0A140ESD7   A0A4P8D758   A0A2H5A4L6   A0A2R3ZDM3   A0A2Z5SFY0   A0A4D6C7P1   A0A220W0L3   A0A346JFF5   A0A097EU72   A0A191TBW1   A0A0U2XU58   X2G836   A0A140ESD0   A0A075X774   A0A075E2S0   A0A075E3N9   A0A0K2D282   A0A161CFJ6   A0A1Y0DA17   A0A140ESG5   A0A141ZUZ5   X2F2I4   A0A140ES81   A0A140ES46   A0A3R5UH96   A0A060ADS8   A0A075E3D7   A0A4D6CAA4   A0A140ES88   A0A145PFU0   A0A2Z5SPD8   A0A162JKN4   A0A1C9C4I6   A0A2Z5SR48   A0A2U9A1Q8   A0A0D5Z9D1   A0A2Z5SIX0   A0A0E3U229   A0A166XB95   X2GCV1   A0A089FVZ2   A0A075E3P2   W8Q9Y7   A0A0E3N634   A0A4D6C7T8   A0A4V1DVY3   A0A1V0K0T3   A0A141ZUY3   A0A140ERM4   A0A140ES95   A0A1W6AKU9   A0A141ZV07   A0A2H4PWI8   A0A4D6C7P4   A0A140ES60   A0A346IMW2   A0A140ESH2   A0A140ES53   A0A141ZUU0   A0A5C0PWA5   A0A140ES74   A0A4P8D772   A0A060A825   H9BQX8   A0A0D5Z9D9   A0A1V0K0S5   A0A514C920  

PDB

6B7N     E-value=0,     Score=2942