Strain
CHINA_AVIAN_2008_NC_016995
(Region: China: Hong Kong; Strain: Wigeon coronavirus HKU20, complete genome.; Date: 2008)
Gene
NS7c protein
Description
Annotated in NCBI,
NS7c protein
Location
GenBank Accession
Sequence
CDS
ATGAATCTCTTTGTTGATCTAGCTCGCCTTTGGCTTGAGCTGTTTGATCACAATCCCCCTCAAGTGGCCATTTATATAGTAGCTGCCTTTTTCTTTTTAGTGCCGCTACATCTACTCACACTTTCAGTCTATCCTGAGCGTTTGTTCTTTGGACAGAGTGAATGTGTTAGGTGTGACGTAGTCTTATCTATTTTAGAAACACTTCTTATAGCAGCTGTTTTCTTTTTACTCAGCCTTGTTAGTAATTACATTTCTATCTTAGGTTGA
Protein
MNLFVDLARLWLELFDHNPPQVAIYIVAAFFFLVPLHLLTLSVYPERLFFGQSECVRCDVVLSILETLLIAAVFFLLSLVSNYISILG
Summary
Uniprot
Pubmed
EMBL
Proteomes
ProteinModelPortal
Ontologies
KEGG
Subcellular Location
From MSLVP
Host cytoplasm. Host nucleus. Host mitochondrion.
Topology
Length:
88
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
44.59995
Exp number, first 60 AAs:
22.5803
Total prob of N-in:
0.11760
POSSIBLE N-term signal
sequence
outside
1 - 21
TMhelix
22 - 44
inside
45 - 64
TMhelix
65 - 87
outside
88 - 88
Population Genetic Test Statistics
Genomic alignment in the CDS region
Multiple alignment of Orthologues
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| CHINA_HS_2019_MN908947 | |||
| CHINA_AVIAN_2008_NC_016995 |
Protein |
YP_005352878.1 |
|
| CHINA_AVIAN_2007_NC_016991 | |||
| CHINA_MURINE_2015_NC_035191 | |||
| CANADA_AVIAN_2007_NC_010800 | |||
| USA_PIG_2000_NC_038861 | |||
| CHINA_AVIAN_2007_NC_011549 | |||
| ITALY_PIG_2009_NC_028806 | |||
| GERMANY_PIG_2012_LT545990 | |||
| CHINA_AVIAN_2007_NC_016992 | |||
| CHINA_BAT_2005_NC_009657 | |||
| CANADA_HS_2003_NC_004718 | |||
| CHINA_BAT_2014_NC_030886 | |||
| CHINA_BAT_2005_NC_018871 | |||
| USA_MURINE_2009_NC_012936 | |||
| CHINA_RABBIT_2006_NC_017083 | |||
| UK_PIG_2000_NC_003436 | |||
| ROMANIA_PIG_2015_LT898435 | |||
| ROMANIA_PIG_2015_LT898436 | |||
| GERMANY_PIG_2015_LT898444 | |||
| GERMANY_PIG_2015_LT898414 | |||
| GERMANY_PIG_2015_LT898439 | |||
| GERMANY_PIG_2015_LT898413 | |||
| GERMANY_PIG_2015_LT898412 | |||
| GERMANY_PIG_2015_LT898411 | |||
| GERMANY_PIG_2015_LT898416 | |||
| GERMANY_PIG_2015_LT898443 | |||
| GERMANY_PIG_2015_LT898420 | |||
| GERMANY_PIG_2015_LT898408 | |||
| GERMANY_PIG_2015_LT898423 | |||
| GERMANY_PIG_2015_LT898432 | |||
| GERMANY_PIG_2015_LT898409 | |||
| GERMANY_PIG_2015_LT898425 | |||
| GERMANY_PIG_2015_LT898446 | |||
| GERMANY_PIG_2014_LT898438 | |||
| GERMANY_PIG_2014_LT898440 | |||
| GERMANY_PIG_2014_LT900501 | |||
| GERMANY_PIG_2014_LT898427 | |||
| GERMANY_PIG_2014_LT898415 | |||
| GERMANY_PIG_2014_LT898421 | |||
| GERMANY_PIG_2014_LT898431 | |||
| GERMANY_PIG_2014_LT898410 | |||
| GERMANY_PIG_2014_LT900498 | |||
| GERMANY_PIG_2014_LT898430 | |||
| GERMANY_PIG_1978_LT897799 | |||
| GERMANY_PIG_2014_LT898447 | |||
| GERMANY_PIG_2014_LT898426 | |||
| GERMANY_PIG_2014_LT898417 | |||
| GERMANY_PIG_2014_LT900500 | |||
| GERMANY_PIG_2014_LT898445 | |||
| AUSTRIA_PIG_2015_LT898418 | |||
| AUSTRIA_PIG_2015_LT898441 | |||
| AUSTRIA_PIG_2015_LT898433 | |||
| AUSTRIA_PIG_2015_LT900502 | |||
| GERMANY_PIG_2015_LT900499 | |||
| BELGIUM_PIG_1980_LT906620 | |||
| BELGIUM_PIG_1977_LT905450 | |||
| SWITZERLAND_PIG_2003_LT905451 | |||
| BELGIUM_PIG_1978_LT906581 | |||
| UK_PIG_1987_LT906582 | |||
| CHINA_PIG_2009_NC_016990 | |||
| CHINA_PIG_2010_NC_039208 | |||
| KENYA_BAT_2010_KY073745 | |||
| KENYA_BAT_2010_NC_032107 | |||
| CHINA_AVIAN_2007_NC_016994 | |||
| EUROPE_MURINE_2004_AY700211 | |||
| CHINA_AVIAN_2007_NC_011550 | |||
| USA_MURINE_1997_NC_001846 | |||
| USA_MURINE_1998_NC_023760 | |||
| MID_EAST_HS_2012_NC_019843 | |||
| CHINA_AVIAN_2007_NC_016993 | |||
| CHINA_MURINE_2013_NC_032730 | |||
| USA_HS_2004_AY585228 | |||
| NETHERLAND_HS_2004_NC_005831 | |||
| CHINA_HS_2004_NC_006577 | |||
| EUROPE_HS_2000_NC_002645 | |||
| NETHERLAND_FERRET_2010_NC_030292 | |||
| JAPAN_FERRET_2013_LC119077 | |||
| USA_FELINE_2005_NC_002306 | |||
| CHINA_MURINE_2011_NC_034972 | |||
| CHINA_AVIAN_2007_NC_016996 | |||
| ARABIA_CAMEL_2015_NC_028752 | |||
| CHINA_AVIAN_2007_NC_011547 | |||
| CHINA_BAT_2012_NC_028824 | |||
| CHINA_BAT_2013_NC_028814 | |||
| CHINA_BAT_2013_NC_028833 | |||
| CHINA_BAT_2011_NC_028811 | |||
| USA_BOVIN_2001_NC_003045 | |||
| CHINA_MURINE_2012_NC_026011 | |||
| GERMANY_ERINACEINAE_2012_NC_022643 | |||
| GERMANY_ERINACEINAE_2012_NC_039207 | |||
| UK_HS_2012_NC_038294 | |||
| AMERICA_WHALE_2007_NC_010646 | |||
| CHINA_BAT_2013_NC_025217 | |||
| UGANDA_BAT_2013_NC_034440 | |||
| CHINA_BAT_2006_NC_009021 | |||
| CHINA_BAT_2008_NC_010438 | |||
| CHINA_BAT_2006_NC_009020 | |||
| CHINA_BAT_2006_NC_009019 | |||
| CHINA_BAT_2006_NC_009988 | |||
| USA_BAT_2006_NC_022103 | |||
| BULGARIA_BAT_2008_NC_014470 | |||
| CHINA_BAT_2008_NC_010437 | |||
| USA_AVIAN_2004_NC_001451 |
