Strain

CHINA_AVIAN_2007_NC_016996 (Region: China: Hong Kong;  Strain: Common-moorhen coronavirus HKU21, complete genome.;  Date: 2007)

Gene

spike glycoprotein

Description

Annotated in NCBI,  spike glycoprotein

Location

NC_016996(+):19085-22729

GenBank Accession

YP_005352881.1

CDS

ATGCAGCGATTTGTATTAACTATTTTATTTGTTAACTGTGTTTATGCAAGTTTTGCAGACACAATATTAGATACTTTGACTTTTCCTGGATTTTCCAGTAAAGTTTTTAAGAGACCTAAAAGGCTTGCACGTGTTGCTAGACAAATGCAAGAACTTACGGATCAGATTATTTTAGATAATAATTTAACCCGTAATTTTCACGTTACTAATCAGGGCAATATATATGGTGGTTCGTATCTATTGTCCTATATTACTAATAATTCATATCCTATTTTTGGGGTTTACCGTTCATATCAACCTTTGTTGGTTAGATGTGTTTTTTCCTTTTCTATGAATGGTAATATTACAGGCAATGGTAAAGATTGGGTTTACACTTTTAACCCGTCTACTACCAATGGTAACTGTAATTCCCCTTTACAGAATAAATATAATGGCACAGTTGATGCCATTAGGTTTGTTACTAATTTTTCAGCTTTTTCTTCTGAAATTACATCTTTTATTTTTAGAGGTGAACATGAAGTTTCTTTTTCATGTAGTAACACCTCTAATGTAACTGCACATGAACATTTACTTATTGTAAATGCAACAACTTTTAAGTCTAATAGTAATATTTTATATTGTTATTTTACTTCCAATTTTAATGGTACATTATCTTCTTTTTATGTAGGTCCATTTCCACCTAATATTGCGGATGTTACGATTTTTAGATCAGGCAACATTTATGTTAATGGTTATTACCTAGGTTATATAGGAATGTCCATACATAATTTTTCAACACATCATGTAGGTTTAACTTATATGTCATCGTTGAGAGGTATTTTTACAGACCAAGTTGATGTACTTGTTAATATTAGTAATTCAGTAATTACCAATATAGTTTATTGTAATCATTCTTTGGTAAACCAAATTAAATGTCAAAGACATTTATTTGATTTACCAGATGGTTTTTATTCTTATTCATCAGTGTCGGATGTTTCGGTGCCTGAAACAGTTATATTATTACCTAAGGAAGTTACTTACTCTCGTGTTAAGTTAACAGCATTTGCTGAGGGTAATATTTTTGATGGTGTTAGTTTGTCTAGTCTTATACTCTCTGAGAATAAAACTAATTCTAACACCACTTTTAACGATACTATATGTGTTGACACCACCTATTTTAATTTTTATTTAAAATTTGCCTGTGGTGGTGGTTCTTTTCGATGTTCTTTATCTTGCAGATCAGCTGGTTGTCCCTTTGATCTACAAGGTTTAAACAACTATCTTTCTTTTGATCACATATGTTTTTCATTACTTAATAATGGTGGTTGCCCAATTCAGCTTTTAGCTTATTGGGGATCATCTTTTTCTCGTGTATTAGCTACAATTTATGTTAGCTATTCTCCTGGTACCAGAATTACTGGTTCTAAAGACTATCGTTCTGGTTTTATAGATCAATCTATAGTCACTTATAATGAGTGTACTAATTATAATATATATGGTATTACAGGCCAAGGTGTTATTACACAATCTGACCTTAGTTTACCATTTGGTTTATATTATACTTCTTATAATGGCGATTTAGTCGCTTTTAAGAATCTTACTAATTCTGTTATATACACTGTTATGCCTTGTCATCTTTCTAGACAAATAGTAGTGTATAATAATACGTATATTGGTACTATTGCTTCTCAAAACCATTCATCTAAGTTTGGTTTTGAAAGCTTGATATCTACTCCAACTTTTTATTATTATTCTAACAATACTAATTGTTCTAATCCTGTTCTCACTTATGGTGAGTTAGGTATCTGTTCAGATGGTGGTATCAAGCAAGTTTTATTGGAAACTGATGCACCACCATCTATTACACCAATGTTTGTTGGTAATATTAGTGTACCTACAAATTTTACTTTATCTGTTCAGAATGAATATTTTCAAATTCAGTCTGAGCAAGTTGTTATTGATTGTGGAAAGTACGTTTGCAATGGTAATTATCGTTGTTTACAGTTACTTTCTCAGTATACTTCAGCATGTTCTAACATTGAATCCACTCTTCATGGTGCTATTCAATTAGATAGTGTTGAAGTTTCTAATTTAATAACTACTTCAAAATCTGGCTTTAATTTAGCTAATATTTCTAATTTTCAGTCAGATTTTAATTTTACTATGTTATTAGCTGATCAACCTCGTACTTTTTCAGCTATAGAAGATTTACTTTTTAATAAAGTAGTAACTAATGGATTGGGTACAGTAGATCAAGATTATAAGAAATGTTCTAAGGGTCTTGCTGTTGCAGACCTTGCCTGTGCCCAATATTATAATGGTATTATGGTTTTACCTGGTGTTGTTGATGCCCAGAAATTAGCCATGTATACTGCTTCACTTACAGGTGGCATGGTTTTTGGTGGTGTAACAGCTGCTGCGGCCGTACCATTTTCTACAGCTGTTCAAGCTAGACTTAATTATGTGGCGCTACAAACAAATGTTTTGCAGGAGAATCAAAAGATCCTTGCAGAATCTTTTAATAGTGCTATATCTAATATTTCATTAGCATTAACTGGCATTACTAATGCTATTGAACAAACTTCTGAGTCTATTGTTACTATGGCTAATGCCATTAACAAAATTCAGACAGTTGTTAATGAACAAGGCGAGGCCCTTTCTCATTTAACAATTCAATTGTCTAATAATTTTCAAGCTATATCGAGTTCTATTCAAGATATTTATAATAGACTTAGTATAGTTGAAGCAGATCAACAAGTTGATAGACTTATTACTGGTCGATTGGCTGCTCTTAACGCTTATGTTACTCAGTTAATAAACCAGTTGTCTGTTATTAGGCAATCTCGTGAGCTTGCTAATCAGAAAATAAATGAGTGTGTTAAGTCACAGAGCCAGCGTTATGGTTTTTGTGGAAATGGTACACATTTATTTTCTATTACAACAGCTGCACCTAATGGTATTATGTTTATGCATGCAGTTTTAGTTCCTACTGCTTATCAAGAGGTTGAAGCTATAGCTGGTATTTGTGTAAATGGTACTAAAGCCTTTACTCTTCGTGAGCCTATGCTTGCTCTCTATAAATATGGAGGTGAGTATAGAATTACATCTAGACGTATGTATGAGCCTAGGCTTCCTACAATGTCTGATTTTATACCTATACAATCTTGTATAGTTCAGTATATTAATGTTACGCAGGAAGATTTACCCAGCATAATCCCTGATTATGTTGATGTAAATTCTACAGTAGATAGCATTATTAATAGTATTCCTAATGTTACTTATCCTGATTTAGATATTAGTATTTATAACCAAACAATACTAAACTTAACTCAGGAAATAACTGATTTACAGGGTAAAGCTAATAATTTATCAGAAATTGCTAAAGAATTGCAGCAATATATTGATAATTTAAATAATACTCTAGTAGACCTTGAGTGGCTTAATAGAGTTGAGACATATATTAAGTGGCCATGGTATATTTGGCTACTTATATTTTTATCCCTAGCAACCTTTGTTTGTATAGTTGTTACTATATTTTTATGCACTGGTTGCTGTGGTGGATGTTTTGGTTGTTTTGGTGGCTGTTGTGGCTTATTTCGTAAACATAAGTTTTATGAAGAAGATACAAAACAGACACCAGTCTTTTTCAAAGTTAAGGAATGGTAG

Protein

MQRFVLTILFVNCVYASFADTILDTLTFPGFSSKVFKRPKRLARVARQMQELTDQIILDNNLTRNFHVTNQGNIYGGSYLLSYITNNSYPIFGVYRSYQPLLVRCVFSFSMNGNITGNGKDWVYTFNPSTTNGNCNSPLQNKYNGTVDAIRFVTNFSAFSSEITSFIFRGEHEVSFSCSNTSNVTAHEHLLIVNATTFKSNSNILYCYFTSNFNGTLSSFYVGPFPPNIADVTIFRSGNIYVNGYYLGYIGMSIHNFSTHHVGLTYMSSLRGIFTDQVDVLVNISNSVITNIVYCNHSLVNQIKCQRHLFDLPDGFYSYSSVSDVSVPETVILLPKEVTYSRVKLTAFAEGNIFDGVSLSSLILSENKTNSNTTFNDTICVDTTYFNFYLKFACGGGSFRCSLSCRSAGCPFDLQGLNNYLSFDHICFSLLNNGGCPIQLLAYWGSSFSRVLATIYVSYSPGTRITGSKDYRSGFIDQSIVTYNECTNYNIYGITGQGVITQSDLSLPFGLYYTSYNGDLVAFKNLTNSVIYTVMPCHLSRQIVVYNNTYIGTIASQNHSSKFGFESLISTPTFYYYSNNTNCSNPVLTYGELGICSDGGIKQVLLETDAPPSITPMFVGNISVPTNFTLSVQNEYFQIQSEQVVIDCGKYVCNGNYRCLQLLSQYTSACSNIESTLHGAIQLDSVEVSNLITTSKSGFNLANISNFQSDFNFTMLLADQPRTFSAIEDLLFNKVVTNGLGTVDQDYKKCSKGLAVADLACAQYYNGIMVLPGVVDAQKLAMYTASLTGGMVFGGVTAAAAVPFSTAVQARLNYVALQTNVLQENQKILAESFNSAISNISLALTGITNAIEQTSESIVTMANAINKIQTVVNEQGEALSHLTIQLSNNFQAISSSIQDIYNRLSIVEADQQVDRLITGRLAALNAYVTQLINQLSVIRQSRELANQKINECVKSQSQRYGFCGNGTHLFSITTAAPNGIMFMHAVLVPTAYQEVEAIAGICVNGTKAFTLREPMLALYKYGGEYRITSRRMYEPRLPTMSDFIPIQSCIVQYINVTQEDLPSIIPDYVDVNSTVDSIINSIPNVTYPDLDISIYNQTILNLTQEITDLQGKANNLSEIAKELQQYIDNLNNTLVDLEWLNRVETYIKWPWYIWLLIFLSLATFVCIVVTIFLCTGCCGGCFGCFGGCCGLFRKHKFYEEDTKQTPVFFKVKEW

Uniprot

H9BR35   H9BQZ2   B6VDY7   B6VDW9   B6VDW0   A0A2Z5XXW1   + More
A0A2Z5XXU1   A0A2Z4EVX3   A0A346IMW2   A0A2R4STW6   A0A2Z4EVU6   A0A2Z4EVX9   A0A4P8D759   A0A140ES95   A0A0D5Z9C5   A0A0D5Z9D1   A0A060A825   X2F2I4   A0A145PFU0   A0A075X774   A0A097EU72   A0A075E3D7   A0A140ESF8   A0A0D5Z9D9   A0A162JKN4   A0A2Z5SR48   X2G836   A0A140ES60   A0A140ESD0   A0A0D5Z8S3   A0A075E2S0   A0A075E3N9   A0A140ESA2   A0A0D5Z8J4   A0A075E3P2   W8Q9Y7   A0A222YVF2   A0A0E3Y594   A0A191TBW7   A0A060ADS8   X2GCV1   A0A060ADD4   A0A140ESG5   A0A2Z5SIX0   A0A222YTS3   A0A0X9L8Q3   A0A191TBW1   A0A0E3U229   A0A140ESD7   A0A4D6C7T8   A0A1V0K0T1   A0A140ES81   A0A2Z5SPD8   A0A140ES46   A0A125QWU7   A0A218PFD9   A0A4D6C7P1   A0A286NGL5   A0A140ES53   A0A2H4PWI8   A0A4D6C7P4   A0A2U9A1G7   A0A125QWU8   A0A0K2D282   A0A223DMX5   A0A0U2XU58   A0A2H5CUP5   H9BQX8   A0A4P8D758   A0A2Z5SFY0   A0A161CFJ6   A0A2L1DHA4   A0A4D6CAA4   A0A0E3Y622   A0A5C0PWA5   A0A140ES74   A0A1S6K7S2   A0A089FVZ2   A0A0E3N634   A0A1P8VJV3   A0A2D0V093   A0A140ERM4   A0A1W6AKU9   A0A1V0K0T0   A0A220W0L3   A0A140ESC3   A0A2S1NBZ5   A0A3G4RHU8   A0A2U9A1I4   A0A4V1E460   A0A161HR42   A0A2U9A1G8   A0A140ES88   A0A223DMX0   A0A3R5UH96   A0A1P8VJU5   A0A346JFF5   A0A4V1DVY3   A0A4P8D760   A0A1S6L971  

Pubmed

22278237    18971277    29872066    30758768    25740769    25153521    + More
24723718    25759498    29070693    29621617    24964136    24723704    26584185    24744332    30941894    28345292    26250097    28758347    25817405    29695146   

EMBL

JQ065049    AFD29244.1    JQ065044    AFD29201.1    FJ376622    ACJ12062.1    + More
FJ376620    ACJ12044.1    FJ376619    ACJ12035.1    LC364346    BBC54861.1    LC364345    BBC54852.1    MG812377    AWV67125.1    MH532440    AXP20281.1    MG242062    AVZ61082.1    MG812375    MG812376    AWV67107.1    AWV67116.1    MG812378    AWV67134.1    MK040454    QCI62295.1    KR265854    AML40825.1    KP995356    AKA42983.1    KP995358    KT371500    KR265856    KR265857    AKA42985.1    ALZ48519.1    AML40839.1    AML40846.1    KJ584356    AIA60980.1    KJ567050    AHM88400.1    KT945050    AMW02952.1    KJ769231    AIH06857.1    KM820765    AIT11900.1    KJ601780    AIB07807.1    KR265863    AML40888.1    KP995359    AKA42986.1    KR060082    ALL74100.1    LC260043    BBA66340.1    KJ462462    KJ584355    KJ584358    KJ620016    KT381613    AHN16220.1    AIA60973.1    AIA60994.1    AIA99518.1    ALJ32185.1    KR265849    KR265850    AML40790.1    AML40797.1    KR265859    LC260041    LC260042    LC260044    AML40860.1    BBA66326.1    BBA66333.1    BBA66347.1    KP995360    KP995361    KP995362    AKA42987.1    AKA42988.1    AKA42989.1    KJ601778    AIB07793.1    KJ601777    AIB07785.1    KR265855    AML40832.1    KP995357    AKA42984.1    KJ601779    AIB07800.1    KJ481931    AHL45007.1    MF431743    ASR75145.1    KP757890    AKC54428.1    KX022603    KX022604    KX022605    ANI85832.1    ANI85839.1    ANI85846.1    KJ584357    AIA60987.1    KJ569769    AHN16227.1    KJ584359    AIA61001.1    KR265864    AML40895.1    LC260040    BBA66319.1    MF431742    ASR75139.1    KT371503    ALZ48522.1    KX022602    ANI85825.1    KP757891    AKC54435.1    KR265860    KR265861    AML40867.1    AML40874.1    MK478382    QBY26060.1    KY078906    KY363867    ARD25169.1    ATV90793.1    KR265852    AML40811.1    LC260038    BBA66305.1    KR265847    AML40776.1    KT371501    ALZ48520.1    LC260045    BAZ95609.1    MK478383    QBY26061.1    MF095123    ASY98687.1    KR265848    AML40783.1    KY436218    ATW75328.1    MK478381    QBY26059.1    MF461409    AWO67517.1    KT371502    ALZ48521.1    KR131621    ALA13745.1    KY926512    ASS83086.1    KT336560    ALS54086.1    MF041982    AUH28250.1    JQ065042    AFD29187.1    MK040451    QCI62292.1    LC260039    BBA66312.1    KR060083    ALL74101.1    MG835611    AVD29971.1    MK478380    QBY26058.1    KP757892    AKC54442.1    MN064712    QEJ80684.1    KR265851    AML40804.1    KX443143    AQS99154.1    KM012168    AIP90486.1    KP981395    AKA97938.1    KX834352    APZ76698.1    KU665558    AML83916.1    KR150443    AML40604.1    KY364365    ARJ31774.1    KY078907    ARD25170.1    KY293677    ASK86334.1    KR265858    AML40853.1    MG837130    MG837131    MG837132    MG837133    AWG96865.1    AWG96872.1    AWG96878.1    AWG96884.1    MH715491    AYU65233.1    MF461408    AWO67516.1    MK005882    MK330605    QCO76963.1    QDP14518.1    KU981059    KU981060    ANA78450.1    MF461410    MF461411    MF461412    AWO67518.1    AWO67519.1    AWO67520.1    KR265853    AML40818.1    KY926511    ASS83084.1    MK248485    QAA06990.1    KX834351    APZ76690.1    MH708123    MH708124    MH708125    AXP32216.1    AXP32223.1    AXP32230.1    MK040449    QCI62290.1    MK040450    QCI62291.1    KY354363    KY354364    KX710201    KX710202    AQT34130.1    AQT34136.1    ASW22233.1    ASW22234.1   

Proteomes

UP000144236    UP000135406    UP000103579    UP000116644    UP000161619    UP000130144    + More
UP000120336    UP000150502    UP000118543    UP000126862    UP000139576    UP000114014    UP000172095    UP000132517    UP000122701    UP000124223    UP000149778    UP000152486    UP000156755    UP000136494    UP000154045    UP000118503    UP000129252    UP000160089    UP000116882    UP000104403    UP000102644    UP000172024    UP000161942    UP000174689    UP000147537    UP000118624    UP000169372    UP000117737    UP000137853    UP000144892    UP000097413    UP000148151    UP000151351    UP000163421    UP000103266    UP000156468    UP000171091    UP000152859    UP000115701    UP000131750    UP000147360    UP000170248    UP000158884   

Pfam

PF01601   Corona_S2
PF01600   Corona_S1

Interpro

IPR002551   Corona_S1
IPR002552   Corona_S2

ProteinModelPortal

H9BR35   H9BQZ2   B6VDY7   B6VDW9   B6VDW0   A0A2Z5XXW1   + More
A0A2Z5XXU1   A0A2Z4EVX3   A0A346IMW2   A0A2R4STW6   A0A2Z4EVU6   A0A2Z4EVX9   A0A4P8D759   A0A140ES95   A0A0D5Z9C5   A0A0D5Z9D1   A0A060A825   X2F2I4   A0A145PFU0   A0A075X774   A0A097EU72   A0A075E3D7   A0A140ESF8   A0A0D5Z9D9   A0A162JKN4   A0A2Z5SR48   X2G836   A0A140ES60   A0A140ESD0   A0A0D5Z8S3   A0A075E2S0   A0A075E3N9   A0A140ESA2   A0A0D5Z8J4   A0A075E3P2   W8Q9Y7   A0A222YVF2   A0A0E3Y594   A0A191TBW7   A0A060ADS8   X2GCV1   A0A060ADD4   A0A140ESG5   A0A2Z5SIX0   A0A222YTS3   A0A0X9L8Q3   A0A191TBW1   A0A0E3U229   A0A140ESD7   A0A4D6C7T8   A0A1V0K0T1   A0A140ES81   A0A2Z5SPD8   A0A140ES46   A0A125QWU7   A0A218PFD9   A0A4D6C7P1   A0A286NGL5   A0A140ES53   A0A2H4PWI8   A0A4D6C7P4   A0A2U9A1G7   A0A125QWU8   A0A0K2D282   A0A223DMX5   A0A0U2XU58   A0A2H5CUP5   H9BQX8   A0A4P8D758   A0A2Z5SFY0   A0A161CFJ6   A0A2L1DHA4   A0A4D6CAA4   A0A0E3Y622   A0A5C0PWA5   A0A140ES74   A0A1S6K7S2   A0A089FVZ2   A0A0E3N634   A0A1P8VJV3   A0A2D0V093   A0A140ERM4   A0A1W6AKU9   A0A1V0K0T0   A0A220W0L3   A0A140ESC3   A0A2S1NBZ5   A0A3G4RHU8   A0A2U9A1I4   A0A4V1E460   A0A161HR42   A0A2U9A1G8   A0A140ES88   A0A223DMX0   A0A3R5UH96   A0A1P8VJU5   A0A346JFF5   A0A4V1DVY3   A0A4P8D760   A0A1S6L971  

PDB

6B7N     E-value=0,     Score=2350