Strain

CHINA_BAT_2011_NC_028811 (Region: China;  Strain: BtMr-AlphaCoV/SAX2011, complete genome.;  Date: 2011)

Gene

hypothetical protein ORF3

Description

Annotated in NCBI,  hypothetical protein ORF3

Location

NC_028811(+):24448-25107

GenBank Accession

YP_009199610.1

CDS

ATGATGGACCCGCTAGGTTTTCTGTGGTATTGGGATTTTGCTCCTAAGACAGTGACACCTAAAGTTGCTGTACCACAAAGTTTACAACCTATTATTGTCCATTCTAATAACAGCGTTATAGGCTTTTTGTTGATTAGCGTTTTCATATATTTCTTTGCTGTGTATAGAGCACACACATACAGGACGCAATTAGTTTGCCTTTTGTGCAAATTTGTGCTTCTTGTTGTTTATGTGCCTCTATTAGTGTACTGCCAAGCATATGTTGACGCTAGTATTATAGCACTAGTGCTTGTCATTAGACTGTGCTATCTGCTCTATTATTCTCTGAAGTATAAGACAGTAGATTTTCTACTATTTAATGATTCCGTGCTTTGTTTTTCCTTCGGCAAAGCATGTTTTGTAAATAATAAGCTTAGGCACTTTATGGTATTTACAGGAGGACACCATTACATGGATCTTGGCTACAATTTCGTACCTTTTGTTGACACGAGCACACTTGATGTGTGTATTCGTGGTAGCTTAGAGTATGATTTATTGTTTTCACGCCAGATTGAATTATGTGATGGTTCTTATTTATATCTTTTTACGAGCCAACCCGTTGTTAGTGTTTGCAACATTGTTACTACAACTCAACTTGACGAAACAGTCATTGAGCTGTAA

Protein

MMDPLGFLWYWDFAPKTVTPKVAVPQSLQPIIVHSNNSVIGFLLISVFIYFFAVYRAHTYRTQLVCLLCKFVLLVVYVPLLVYCQAYVDASIIALVLVIRLCYLLYYSLKYKTVDFLLFNDSVLCFSFGKACFVNNKLRHFMVFTGGHHYMDLGYNFVPFVDTSTLDVCIRGSLEYDLLFSRQIELCDGSYLYLFTSQPVVSVCNIVTTTQLDETVIEL

Uniprot

A0A0U1UYW5   A0A1L2KJL1   A0A411NPJ8   A0A411NPH8   A0A411NPF9   A0A411NPF1   + More
A0A411NPE8   A0A172PC16   A0A411NPH4   A0A411NPJ0   A0A411NPC1   A0A411NPK3   A0A411NPC8   A0A411NPJ1   A0A411NPK4   A0A411NPG1   A0A411NPI9   A0A411NPL8   A0A411NPB7   A0A411NPJ4   A0A411NPF5   A0A411NPH6   A0A411NPK5   A0A411NPM8   A0A411NPA8   A0A0A0U8R3   G9I1Q7   A0A411NPE0   A0A411NPC6   A0A411NPE9   A0A411NPF7   A0A411NPC9   A0A411NPJ9   A0A411NPE4   A0A411NPE6   A0A411NPG9   A0A411NPH5   A0A411NPE5   A0A411NPD8   A0A411NPF3   A0A411NPK9   A0A411NPF2   A0A411NPF0   A0A411NPD9   A0A411NPJ5   A0A411NPI6   S5ZIX9   A0A1L2KGF2   A0A411NPH3   A0A411NPN5   A0A411NPI7   I3QJZ9   A0A4D6NY68   A0A0U1VEK2   A0A097I537   A0A097I545   A0A167NFR8   A0A0U1YF77   A0A190LBQ0   M1GS71   A0A1P7ZRM8   A0A0U1YH23   A0A411NPG7  

Pubmed

23269482    27178127    28095455   

EMBL

KJ473806    AIA62247.1    KY073747    APD51500.1    MH744217    QBF53886.1    + More
MH744222    QBF53891.1    MH744202    QBF53871.1    MH744203    QBF53872.1    MH744204    QBF53873.1    KX010469    AND65686.1    MH744218    QBF53887.1    MH744244    QBF53913.1    MH744162    QBF53831.1    MH744248    QBF53917.1    MH744184    QBF53853.1    MH744245    QBF53914.1    MH744246    QBF53915.1    MH744214    QBF53883.1    MH744181    QBF53850.1    MH744237    QBF53906.1    MH744163    QBF53832.1    MH744236    QBF53905.1    MH744205    QBF53874.1    MH744220    QBF53889.1    MH744219    QBF53888.1    MH744247    QBF53916.1    MH744158    QBF53827.1    KM213252    AIW39677.1    JN547398    AEW24869.1    MH744186    QBF53855.1    MH744168    QBF53837.1    MH744167    QBF53836.1    MH744169    QBF53838.1    MH744183    QBF53852.1    MH744191    QBF53860.1    MH744190    QBF53859.1    MH744188    QBF53857.1    MH744212    QBF53881.1    MH744189    QBF53858.1    MH744195    QBF53864.1    MH744194    QBF53863.1    MH744200    QBF53869.1    MH744201    QBF53870.1    MH744192    QBF53861.1    MH744196    QBF53865.1    MH744193    QBF53862.1    MH744209    QBF53878.1    MH744230    QBF53899.1    KF430219    AGT21334.1    KY073748    APD51508.1    MH744216    QBF53885.1    MH744231    QBF53900.1    MH744232    QBF53901.1    JQ664302    KX852322    KX852331    KX852332    KX852333    KX852334    KX852335    AFK09785.1    ASK39728.1    ASK39737.1    ASK39738.1    ASK39739.1    ASK39740.1    ASK39741.1    MH909811    QCE31489.1    KJ857447    AJD09570.1    KM048298    AIT56231.1    KM048308    AIT56241.1    KU641665    ANB44400.1    KJ857445    AJD09568.1    KP281650    KP281651    AKA64557.1    AKA64558.1    KC161188    AGE46004.1    KU363131    AMK69978.1    KJ857441    AJD09564.1    MH744161    QBF53830.1   

Proteomes

UP000144778    UP000174423   

Pfam

PF03053   Corona_NS3b

Interpro

IPR004293   Coronavirus_Orf3b

ProteinModelPortal

A0A0U1UYW5   A0A1L2KJL1   A0A411NPJ8   A0A411NPH8   A0A411NPF9   A0A411NPF1   + More
A0A411NPE8   A0A172PC16   A0A411NPH4   A0A411NPJ0   A0A411NPC1   A0A411NPK3   A0A411NPC8   A0A411NPJ1   A0A411NPK4   A0A411NPG1   A0A411NPI9   A0A411NPL8   A0A411NPB7   A0A411NPJ4   A0A411NPF5   A0A411NPH6   A0A411NPK5   A0A411NPM8   A0A411NPA8   A0A0A0U8R3   G9I1Q7   A0A411NPE0   A0A411NPC6   A0A411NPE9   A0A411NPF7   A0A411NPC9   A0A411NPJ9   A0A411NPE4   A0A411NPE6   A0A411NPG9   A0A411NPH5   A0A411NPE5   A0A411NPD8   A0A411NPF3   A0A411NPK9   A0A411NPF2   A0A411NPF0   A0A411NPD9   A0A411NPJ5   A0A411NPI6   S5ZIX9   A0A1L2KGF2   A0A411NPH3   A0A411NPN5   A0A411NPI7   I3QJZ9   A0A4D6NY68   A0A0U1VEK2   A0A097I537   A0A097I545   A0A167NFR8   A0A0U1YF77   A0A190LBQ0   M1GS71   A0A1P7ZRM8   A0A0U1YH23   A0A411NPG7  

KEGG

vg:26626798     vg:16607890    

GO

GO:0016021  C:integral component of membrane

From MSLVP

Multi-Pass Membrane

Length:

219

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

67.33054

Exp number, first 60 AAs:

21.66304

Total prob of N-in:

0.00232

POSSIBLE N-term signal

sequence

outside

1  -  29

TMhelix

30  -  52

inside

53  -  63

TMhelix

64  -  83

outside

84  -  86

TMhelix

87  -  109

inside

110  -  219

 

 

Pi

0.2892814

Theta

0.3932345

Tajima's D

-0.9830083

CLR

3.802539

Interpretation

No evidence of Selection