Strain

USA_PIG_2000_NC_038861 (Region: USA:Indiana;  Strain: Transmissible gastroenteritis virus complete genome, genomic RNA.;  Date: 2000)

Gene

non-structural protein 7

Description

Annotated in NCBI,  non-structural protein 7

Location

NC_038861(+):28071-28307

GenBank Accession

NP_058429.1

Full name

Non-structural protein 7       + More
Non-structural protein 7a      

Alternative Name

9 kDa hydrophobic protein
Accessory protein 7
X3 protein
11 kDa protein
Accessory protein 7a

CDS

ATGCTCGTCTTCCTCCATGCTGTATTTATTACAGTTTTAATCTTACTACTAATTGGTAGACTCCAATTATTAGAAAGACTATTACTTAATCACTCTTTCAATCTTAAAACTGTCAATGACTTTAATATCTTATATAGGAGTTTAGCAGAAACCAGATTACTAAAAGTGGTGCTTCGAGTAATCTTTCTAGTCTTACTAGGATTTTGCTGCTACAGATTGTTAGTCACATTAATGTAA

Protein

MLVFLHAVFITVLILLLIGRLQLLERLLLNHSFNLKTVNDFNILYRSLAETRLLKVVLRVIFLVLLGFCCYRLLVTLM

Function

May function in the formation of membrane-bound replication complexes or in the assembly of the virus.

Similarity

Belongs to the coronaviruses ns7/ns7a protein family.

Keywords

Host membrane   Membrane   Reference proteome   Signal   Transmembrane   Transmembrane helix  

Feature

chain  Non-structural protein 7

Uniprot

Q0PKZ8   Q0PKY9   F1CNZ3   P04136   Q7T714   A0A0E3JS33   + More
Q6BE36   Q0PL07   Q0PL24   Q88516   A5H740   P05992   Q0PL15   A0A0K1RLQ2   A0A384VK58   A0A384V9G1   H6UYR9   A0A3Q8BR85   A0A384VK14   A0A384V9R4   A0A384V9Q5   P69613   P69612   A0A0U2UKK8   H6UYR7   A5H739   Q27HF7   Q04703   P36301   Q7T6S7   B7T4C4   H6UYR8   Q6BE40   Q5DQ87   A0A0K2BMR3   A0A384VAI0   Q9YRA3   A0A384V9S9   A0A2H4KI16   A0A077ERG1   A0A077EX74   S6BFJ2   C6GHA2   E3W5I6   C6GHH4   E0AGW2   A0A077EQX1   C6GHK7   C6GHF3  

Pubmed

17023013    23043168    25890036    2825819    3008432    10805807    + More
15240950    1310191    15830158    18172751    8546012    20229183    2835592    26250391    2174956    1662846    27619563    16704791    17275120    18306032    19036814    21481551    22002680    22542271    22609354    25180686    25953186    1329312    1431811    15177889    26221765    10365166    25150756   

EMBL

DQ811788    ABG89320.1    DQ811789    ABG89334.1    HQ462571    HM776941    + More
KC962433    KU729220    KX499468    KX900393    KX900394    KX900402    ADY39746.1    AEM55572.1    AGM75132.1    AML22780.1    AQT01355.1    ASV64283.1    ASV64292.1    ASV64364.1    X06371    M14878    AJ271965    AB115410    DQ437506    DQ437507    DQ443743    AY337931    EF100897    AAQ02371.1    ABO15836.1    KP202848    AKA60060.1    EF100894    AB115405    AB115406    AB115407    AB115408    AB115409    ABO15833.1    BAD34526.1    BAD34527.1    BAD34528.1    BAD34529.1    BAD34530.1    DQ811787    ABG89313.1    DQ811785    ABG89297.1    DQ201447    EU074218    FJ755618    GQ914800    KT696544    AB115411    Z35758    ABC72420.1    ABU49665.1    ACN71202.1    ACX54784.1    AMB66494.1    BAD34532.1    CAA84812.1    EF100896    ABO15835.1    Y00542    DQ811786    ABG89307.1    KR270796    AKV62761.1    KX900399    KX900404    KX900405    KX900406    KX900407    ASV64337.1    ASV64381.1    ASV64390.1    ASV64399.1    ASV64408.1    KX900395    KX900396    KX900397    ASV64301.1    ASV64310.1    ASV64319.1    JN709476    AFA41869.1    KY406735    ASV45154.1    KX900398    ASV64328.1    KX900401    ASV64355.1    KX900400    ASV64345.1    Z24675    X60056    KR061459    KX689261    ALR84920.1    AOT21925.1    JN709474    AFA41867.1    EF100895    ABO15834.1    DQ112226    DQ401031    DQ403250    EU856361    EU856362    EU924790    GU146061    GQ477367    HQ450376    HQ450377    JF682842    JN856008    JQ404409    JQ404410    KC175340    KC175341    KP981644    KY063616    KY063617    KY063618    AB781790    AAZ91443.1    ABD62164.1    ABD62166.1    ACJ63238.1    ACJ63249.1    ACJ64182.1    ADB10856.1    ADB28914.1    ADU17732.1    ADU17741.1    AEE69329.1    AEQ61974.1    AFG19728.1    AFG19746.1    AFX81104.1    AFX81114.1    AKA65836.1    ASB15745.1    ASB15755.1    ASB15763.1    BAN67925.1    X66717    D13096    AY342160    EU924791    ACJ64191.1    JN709475    AFA41868.1    AB115401    AB115402    AB115403    AB115404    BAD34522.1    BAD34523.1    BAD34524.1    BAD34525.1    AY548235    AAT45199.1    KP849472    AKZ66479.1    KX900408    KX900409    KX900410    ASV64417.1    ASV64426.1    ASV64435.1    AF104420    AAC96009.1    KX900411    ASV64444.1    KX722529    ASU62495.1    KJ665779    KJ665786    AIL54064.1    AIL54078.1    KJ665783    AIL54072.1    AB781789    BAN67916.1    FJ938052    ACT10872.1    HQ392471    ADO39846.1    FJ938059    ACT10944.1    HQ012368    ADL71462.1    KJ665780    KJ665781    KJ665782    KJ665784    KJ665787    AIL54066.1    AIL54068.1    AIL54070.1    AIL54074.1    AIL54080.1    FJ938062    ACT10977.1    FJ938057    ACT10923.1   

Proteomes

UP000137024    UP000158285    UP000113525    UP000123026    UP000131894    UP000166047    + More
UP000001440    UP000158504    UP000098772    UP000149523    UP000145148    UP000111647    UP000121388    UP000156732    UP000166023    UP000129150    UP000125818    UP000106470    UP000115330    UP000119169    UP000129066    UP000153699    UP000155481    UP000165378    UP000174600    UP000114363    UP000145457    UP000153160    UP000141579    UP000173643    UP000151137   

PRIDE

Q04703   

Pfam

PF02398   Corona_7

Interpro

IPR003449   Corona_7

ProteinModelPortal

Q0PKZ8   Q0PKY9   F1CNZ3   P04136   Q7T714   A0A0E3JS33   + More
Q6BE36   Q0PL07   Q0PL24   Q88516   A5H740   P05992   Q0PL15   A0A0K1RLQ2   A0A384VK58   A0A384V9G1   H6UYR9   A0A3Q8BR85   A0A384VK14   A0A384V9R4   A0A384V9Q5   P69613   P69612   A0A0U2UKK8   H6UYR7   A5H739   Q27HF7   Q04703   P36301   Q7T6S7   B7T4C4   H6UYR8   Q6BE40   Q5DQ87   A0A0K2BMR3   A0A384VAI0   Q9YRA3   A0A384V9S9   A0A2H4KI16   A0A077ERG1   A0A077EX74   S6BFJ2   C6GHA2   E3W5I6   C6GHH4   E0AGW2   A0A077EQX1   C6GHK7   C6GHF3  

KEGG

vg:26626394    

GO

GO:0016021  C:integral component of membrane
GO:0033644  C:host cell membrane

From MSLVP

Single-Pass Membrane

From Uniprot

Host membrane  

Length:

78

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

42.5847

Exp number, first 60 AAs:

27.52852

Total prob of N-in:

0.93206

POSSIBLE N-term signal

sequence

inside

1  -  1

TMhelix

2  -  24

outside

25  -  55

TMhelix

56  -  75

inside

76  -  78