CoVDB Coronavirus Database (v2) Go to the lastest version >>
Found: 10 items
Strain Gene Type Sub Loc Uniprot Sublocation Topology
Pgo_410543 QHD43415.1 ORF1 Capsid Host membrane
outside 1 - 2020
TMhelix 2021 - 2043
inside 2044 - 2087
TMhelix 2088 - 2110
outside 2111 - 2129
TMhelix 2130 - 2152
inside 2153 - 2445
TMhelix 2446 - 2468
outside 2469 - 2721
TMhelix 2722 - 2744
inside 2745 - 2756
TMhelix 2757 - 2779
outside 2780 - 3160
TMhelix 3161 - 3178
inside 3179 - 3184
TMhelix 3185 - 3207
outside 3208 - 3221
TMhelix 3222 - 3244
inside 3245 - 3264
TMhelix 3265 - 3284
outside 3285 - 3315
TMhelix 3316 - 3338
inside 3339 - 3357
TMhelix 3358 - 3380
outside 3381 - 6475
Pgo_410543 QHD43416.1 S Host nucleus > host nucleolus. Host cytoplasm. Secreted. Host cell membrane
Accumulates in the endoplasmic reticulum-Golgi intermediate compartment, where it participates in virus particle assembly. Some S oligomers are transported to the host plasma membrane, where they may mediate cell-cell fusion.
referred by 1 publications
outside 1 - 1059
TMhelix 1060 - 1082
inside 1083 - 1119
Pgo_410543 QHD43417.1 Host nucleus > host nucleolus. Host cytoplasm. Secreted.

outside 1 - 33
TMhelix 34 - 56
inside 57 - 68
TMhelix 69 - 91
outside 92 - 248
Pgo_410543 QHD43418.1 E Host nucleus. Host cytoplasm. Host Golgi apparatus membrane
The cytoplasmic tail functions as a Golgi complex-targeting signal.
referred by 1 publications
inside 1 - 11
TMhelix 12 - 34
outside 35 - 75
Pgo_410543 QHD43419.1 M Host nucleus. Host cytoplasm.

outside 1 - 66
Pgo_410543 QHD43420.1 Host nucleus. Host cytoplasm.

outside 1 - 61
Pgo_410543 QHD43421.1 Host nucleus > host nucleolus. Host cytoplasm. Secreted.

outside 1 - 90
Pgo_410543 QHD43422.1 Host nucleus. Host cytoplasm.

outside 1 - 94
Pgo_410543 QHD43423.2 N Host nucleus > host nucleolus. Host cytoplasm. Secreted. Host Golgi apparatus
Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding.
referred by 1 publications
outside 1 - 417
Pgo_410543 QHI42199.1 Single-Pass Membrane

outside 1 - 38
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