Strain

USA_FELINE_2005_NC_002306 (Region: USA;  Strain: Feline infectious peritonitis virus, complete genome.;  Date: 2005)

Gene

matrix protein

Description

Annotated in NCBI,  matrix protein

Location

NC_002306(+):26213-27001

GenBank Accession

YP_004070198.1

Full name

Membrane protein      

Alternative Name

E1 glycoprotein
Matrix glycoprotein
Membrane glycoprotein

CDS

ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAACGCTACTGTGCCATGCAAGACAGTGGCTTGCAGTGTATTAATGGCACAAATTCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATTGTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTGTAA

Protein

MKYILLILACIIACVYGERYCAMQDSGLQCINGTNSRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV

Function

Component of the viral envelope that plays a central role in virus morphogenesis and assembly via its interactions with other viral proteins.

Subunit

Homomultimer. Interacts with envelope E protein in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Forms a complex with HE and S proteins. Interacts with nucleocapsid N protein. This interaction probably participates in RNA packaging into the virus.

Similarity

Belongs to the alphacoronaviruses M protein family.

Keywords

Glycoprotein   Host Golgi apparatus   Host membrane   Membrane   Reference proteome   Transmembrane   Transmembrane helix   Viral envelope protein   Viral matrix protein   Virion  

Feature

chain  Membrane protein

Uniprot

A0A5K1UP61   K7XQY7   I0B0S4   P25878   Q6SR87   A3DT40   + More
A0A088NCE1   A0A077JIR6   A0A088NCM4   C6GH89   A0A088NG02   C5IJ76   A0A2H5BX17   A0A088NC61   C6GHB1   Q8JVR3   E3W5J4   A0A386YKT5   Q3Y4E6   Q8JVR1   G1FEZ1   C6GHA0   C6GHH2   C6GHI3   A0A125R598   E0AGZ1   C6GHF1   A0A125R5H6   E0AGY0   A0A125R5C1   E3W5G2   C6GHE0   C6GHJ4   A0A1Z2WUB3   A0A125R5J8   C5IGF3   A0A088NDA3   B0LJR3   A0A2U8Z815   A0A2H4KI18   A0A088NCX5   G1FEY0   A0A2H4KI34   E0AGW0   C6GHG1   A0A088NFY8   C6GHC0   A0A088NRK2   A0A088NCC2   C5IGD6   A0A088NFW0   C5IJ46   C5IJ38   A0A0C5CJL7   A0A515KYV0   A0A0C5CJP4   C5IJ49   A0A088NS44   A0A088ND19   A0A088NS40   E0AH02   A0A088NCT8   A0A088NCD4   D3KDK8   A0A088NS49   T1SQV7   D3KDL9   C6GHD0   C6GHK5   A0A088NCX2   C5IGE4   A0A088NBZ3   C5IGA9   A0A088ND96   A0A088NCR2   A0A088NCV4   A0A088NCF5   C5IG91   A0A0C5CJM5   A0A2H4KI24   A0A088ND92   C5IGG2   A0A088NFZ4   A0A088NCW9   C5IGH1   A0A088NCD8   C5IGC7   E3W5I4   A0A088NFH9   C5IGI9   E3W5H3   Q09PH1   C5IJ56   A0A344X1U0   E0AGX0   C5IGK7   O12297   C5IGJ8   E0AGU9   C5IGL6  

Pubmed

22438554    23996606    1847259    16033972    25180686    8839428    + More
26822958    18077720    25667330   

EMBL

JQ408980    AFH55116.1    KC175339    AFX81095.1    JQ408981    KC461235    + More
KC461236    KC461237    AFH55125.1    AGZ84521.1    AGZ84531.1    AGZ84541.1    X56496    DQ010921    AY994055    AY452033    AAR13817.1    DQ286389    ABD33844.1    KJ879407    AIN55928.1    AB907624    BAP19071.1    KJ879375    AIN55845.1    FJ938051    ACT10859.1    KJ879406    AIN55927.1    FJ943771    ACR46152.1    KY566209    KY566210    KY566211    AUG98124.1    AUG98135.1    AUG98146.1    KJ879378    AIN55858.1    FJ938053    ACT10881.1    AB086902    BAC01156.1    HQ392472    ADO39854.1    MH817484    AYF53098.1    DQ160294    AAZ86082.1    AB086903    BAC01158.1    JN183883    AEK25526.1    FJ938052    ACT10870.1    FJ938059    ACT10942.1    FJ938060    ACT10953.1    KU215419    KU215420    KU215424    KU215425    AMD11135.1    AMD11147.1    AMD11191.1    AMD11202.1    HQ012371    ADL71491.1    FJ938057    ACT10921.1    KU215426    AMD11213.1    HQ012370    ADL71480.1    KU215421    KU215422    AMD11158.1    AMD11169.1    HQ392469    ADO39822.1    FJ938056    ACT10910.1    FJ938061    ACT10964.1    KY292377    ASB16892.1    KU215423    KU215427    KU215428    AMD11180.1    AMD11224.1    AMD11235.1    FJ917526    ACR10346.1    KJ879405    AIN55926.1    EU186072    ABX60147.1    MF457591    AWN93246.1    KX722529    ASU62493.1    KJ879404    AIN55925.1    JN183882    AEK25515.1    KX722531    ASU62514.1    HQ012368    ADL71460.1    FJ938058    ACT10931.1    KJ879390    AIN55907.1    FJ938054    ACT10890.1    KJ879345    AIN55784.1    KJ879389    AIN55903.1    FJ917524    ACR10329.1    KJ879344    KJ879346    KJ879379    KJ879381    KJ879382    KJ879384    AIN55782.1    AIN55786.1    AIN55859.1    AIN55870.1    AIN55874.1    AIN55882.1    FJ943762    ACR46122.1    FJ943761    ACR46114.1    KP143507    KP143509    KP143511    KP143512    AJO26978.1    AJO26998.1    AJO27018.1    AJO27028.1    MN165107    QDM36991.1    KP143510    AJO27008.1    FJ943763    ACR46125.1    KJ879403    AIN55924.1    KJ879380    AIN55866.1    KJ879398    AIN55919.1    HQ012372    ADL71502.1    KJ879351    AIN55796.1    KJ879397    AIN55918.1    GU553361    ADC35466.1    KJ879408    AIN55929.1    KF530123    AGT52085.1    GU553362    ADC35477.1    FJ938055    ACT10900.1    FJ938062    ACT10975.1    KJ879387    KJ879399    KJ879400    KJ879401    AIN55894.1    AIN55920.1    AIN55921.1    AIN55922.1    FJ917525    ACR10337.1    KJ879352    AIN55798.1    FJ917521    FJ917522    ACR10302.1    ACR10311.1    KJ879395    AIN55916.1    KJ879383    AIN55875.1    KJ879388    AIN55895.1    KJ879343    AIN55780.1    FJ917519    FJ917520    FJ917534    FJ917535    ACR10284.1    ACR10293.1    ACR10418.1    ACR10426.1    KP143508    AJO26988.1    KX722530    ASU62504.1    KJ879391    AIN55911.1    FJ917527    ACR10355.1    KJ879396    AIN55917.1    KJ879394    AIN55915.1    FJ917528    FJ917529    ACR10364.1    ACR10373.1    KJ879402    AIN55923.1    FJ917523    ACR10320.1    HQ392471    ADO39844.1    KJ879347    AIN55787.1    FJ917530    ACR10382.1    HQ392470    ADO39833.1    DQ848678    ABI14450.1    FJ943764    ACR46132.1    MG893511    AXE71625.1    HQ012369    ADL71470.1    FJ917532    ACR10400.1    Y13921    CAA74229.1    FJ917531    ACR10391.1    HQ012367    ADL71449.1    FJ917533    ACR10409.1   

Proteomes

UP000096172    UP000119918    UP000131699    UP000156095    UP000169693    UP000180339    + More
UP000000835    UP000140386    UP000144800    UP000117062    UP000123646    UP000153548    UP000173564    UP000114363    UP000153160    UP000118118    UP000113596    UP000117806    UP000135717    UP000143834    UP000169984    UP000151137    UP000161862    UP000128709    UP000125896    UP000135072    UP000113038    UP000140550    UP000147290    UP000102801    UP000126919    UP000158395    UP000141821    UP000144443    UP000141579    UP000122558    UP000155736    UP000100168    UP000115718    UP000140032    UP000170923    UP000105943    UP000110620    UP000137357    UP000113324    UP000138585    UP000162682    UP000173643    UP000149467    UP000145457    UP000165438    UP000118215    UP000161789    UP000171330   

Pfam

PF01635   Corona_M

Interpro

IPR002574   Corona_M
IPR042551   ALPHA_CORONA_M

ProteinModelPortal

A0A5K1UP61   K7XQY7   I0B0S4   P25878   Q6SR87   A3DT40   + More
A0A088NCE1   A0A077JIR6   A0A088NCM4   C6GH89   A0A088NG02   C5IJ76   A0A2H5BX17   A0A088NC61   C6GHB1   Q8JVR3   E3W5J4   A0A386YKT5   Q3Y4E6   Q8JVR1   G1FEZ1   C6GHA0   C6GHH2   C6GHI3   A0A125R598   E0AGZ1   C6GHF1   A0A125R5H6   E0AGY0   A0A125R5C1   E3W5G2   C6GHE0   C6GHJ4   A0A1Z2WUB3   A0A125R5J8   C5IGF3   A0A088NDA3   B0LJR3   A0A2U8Z815   A0A2H4KI18   A0A088NCX5   G1FEY0   A0A2H4KI34   E0AGW0   C6GHG1   A0A088NFY8   C6GHC0   A0A088NRK2   A0A088NCC2   C5IGD6   A0A088NFW0   C5IJ46   C5IJ38   A0A0C5CJL7   A0A515KYV0   A0A0C5CJP4   C5IJ49   A0A088NS44   A0A088ND19   A0A088NS40   E0AH02   A0A088NCT8   A0A088NCD4   D3KDK8   A0A088NS49   T1SQV7   D3KDL9   C6GHD0   C6GHK5   A0A088NCX2   C5IGE4   A0A088NBZ3   C5IGA9   A0A088ND96   A0A088NCR2   A0A088NCV4   A0A088NCF5   C5IG91   A0A0C5CJM5   A0A2H4KI24   A0A088ND92   C5IGG2   A0A088NFZ4   A0A088NCW9   C5IGH1   A0A088NCD8   C5IGC7   E3W5I4   A0A088NFH9   C5IGI9   E3W5H3   Q09PH1   C5IJ56   A0A344X1U0   E0AGX0   C5IGK7   O12297   C5IGJ8   E0AGU9   C5IGL6  

PDB

4FBH     E-value=3.67157,     Score=67