Strain
CANADA_AVIAN_2007_NC_010800
(Region: Canada; Strain: Turkey coronavirus, complete genome.; Date: 2007)
Gene
ORF1a
Description
Annotated in NCBI,
ORF1a
Location
GenBank Accession
Sequence
CDS
ATGGCTTCAAGCCTAAAACAGGGAGTATCTCCCAAACCAAGGGATGTCATTCTTGTTTCCAAAGACATTCCCGACCAACTCTGTGACGCTTTATTCTTTTATACGTCACACAACCCTAAGGATTACGCTGATGCTTTTGCAGTTAGGCATAAGTTTGACCGTAATCTTCAGACTGGGAAGCAGTTTAAATTTGAAACTGTGTGTGGTCTCTTCCTTTTGAAGGGAGTTGACAAAATAACACCTGGCGTCCCAGCAAAAGTTTTAAAAGCCACTTCTAAGTTGGCAGATCTAGAAGACATCTTTGGTGTCTCTCCCTTTGCACGGAAGTACCGTGAATTGTTGAAGACAGCATGCCAGTGGTCTCTCACTGTAGACACACTGGATGCTCGTGCACAAACTCTTGATGAAATTTTTGACCCCACTGAAATATTTTGGCTTCAGGTGGCCGCAAAAGTTCAAGTTTCAGCTATGGCAATGCGCAGGCTTGTTGGAGAAGTAACTGCAAAAGTCATGGAAGCTCTTGGCTCAAATTTGAGTGTTCTCTTTCAAATTGTTAAACAACAAATAGCCAGAATCTTTCAAAAGGCACTGGCTATTTTCGAGAATGTGAGTGACTTACCGCAGCGTGTTGCAGCACTTAAGATGGCCTTTGCCAAGTGTGCCAAGTCAATTACTGTTGTGGTTGTGGAAAGAACTCTAGTTGTTAGAGAGTTCGCAGGGACTTGCCTTGCAAGCATCAATGGTGCTGTTGCAAAATTCTTTGAGGAACTTCCAAATGGCTTTATGGGTTCTAAAGTCTTCACAACATTGGCCTTTTTTAAGGAAGCAGCTGTGAAAATTGTGGAAAATATACCAAATGCACCAAGGGGCACTAAAGGGTTTGAAGTCATTGGCAATGCCAAGGGTACACAAGTTGTTGTGCGTGGCATGCGAAATGATCTAACGTTGCTTGACCAAAAAGCTGACGTCCCTGTGGAGTCAGAAGGTTGGTCTGCAATCCTAGAAGGACATCTTTGCTATGTCTTTAAGAGTGGCGATCGTTTCTATGCGGCACCTCTTTCAGGAAATTTTGCATTGCATGATGTACATTGCTGCGAGCGTGTTGTCTGTCTTTCTGATGGTGTAACACCAGAGATAAATGATGGACTCGTTCTAGCCGCAATCTATTCATCTTTTGGTGTCTCAGAACTTGTGGCAGCCCTTAAAAAAGGTGAACCATTTAAGTTTTTAGGCCATAAGTTTGTGTACGTAAAGGATGAAGCAGTTTCGTTTACTTTAGCGAAGGCTGCCACTATTGCAGATGTTCTGAAGCTGTTTCAGTCAGCTCGTGTGCAGGTAGACGATGTTTGGTCTTCATTTACTGAAAAGTCTTTTGAATTCTGGAGGCGCGCGTATGGAAAAGTGCGCCATCTTGAAGAACTTGTGAAGACTCACTTTTGTAAAGCTCAAATGTCAATTGTGGTTCTAGCAGCAGTGCTTGGAGAAGGCATTTGGCATCTTGCCTCACAAGTCATCTACAAATTAGGTGGTCTTTTTACTAAAGTTGTTGATTTTTGTGAGAAACACTGGCAGGGGTTTTGCGTTCAGTTGAAGAGGGCTAAGCTCGTTGTCACTGAAAATTTTTGTGTTCTAAAAGGAGTTGCACAGCACTGTTTTCAACTATTGCTGGGTGCAATACATTCTCTGTATAAGAGTTTTAAGAAGTGTGTACTTGGTAGAATTCATGGAGACTTGCTCTTCTGGAAAGGTGGTGTACACAAAATTGTTCAAGATGGCGATGAAATTTGGTTTGACGCCATTGATAGTGTTGATGTTGAAGATCTGGGTGTTGTTAAAGACAAACCTATAGATTTTGAGGTTTGTGAAGACGTAACACTTCCAGAAAACCAACCTGGTCACATGGTTCAAATCGAAGAAGATGGAAAGAACTATATGTTTTTCCGATTCAAAAGGGATGAGAACATCTATTATACACCAATGTCTCAACTTGGTGCAATTAATGTAGTTTGCAAAGCAGGCGGTAAAACCGTTACCTTTGGAGGCACTACTGTGAAAGAAATACCGCCACCTGATGTTGTGCCTATTAAGGTTAGCATCGAGTGCTGTGGTGAACCATGGAATACAATCTTCAAGAAAGCTTATAAAGAGCCCATTGAAGTTGAGACAGACCTCACAGTTGAACAATTGCTCTCTGTGATCTATGAGAAAATGTGTGATGACCTCAAATTGTTTCCAGAGGCTCCAGAGCCTCCACCATTTGAGAACGTCGCTCTTGTTGATAAGAACGGTAAAGACTTGGATTGTATAAAATCATGCCATCTTATCTACCGTGATTATGAGAGTGGTGATGATATCGAGGAGGATGATGCTGAGGAGTTTGATACTGACTCAGCTGATGCTGAAGAATGTGACACAGCCTCAGAATGTGAAGAAGAGGACGAGGATACTAAAGTGTTGGCTCTTATACAAGACCCGGCAAGTAACAAGTACCCTCTTCCACTAGATGATGATTATAGCGTCTACAATGGTGCAATTGTTCATAAAGACGCTCTTGATGTTGTGAATTTACCATCTGGTGAAGAAACTTTTGTTGTTAGTAATTGTTTTGAGGGAGCTGTTAAACCACTCCCACAGAAAGTTATTGATGTTCTAGGTGACTGGGGTGAGGCTGTTGATGCACAAGAACAATTGTGTCAACAGGAATCTACTCGAGTCGTATTTGAGAAACCGGTTGAGGATTCTACTGGTAGTTGCGAGGCAATGGTTGAACGAACTGTTGTTGAAGAACATGCTGTAGTTCCTGTGGTTGAGAATAAGTCGGATGTAGTTGTTTATACACCTGCCGATCTAGAAGTTGTTAAAGAAACAGCAGAAGAGGTGGACGAGTTCATTCTCATTTCTGATGTTTCTAAAGAAGAAGTTGTGTCTCAAGAGAAAGAAGAGCCACAAGTTGAGCAACATCCTACTCAAGTTGTTAAACCACAACGCGAGAAGAAGGCTAAAAAGTTTAAAGTTAAACCAGCCACATGTGAAAAACCCAAGTTTTTGGAGTATAAAACTTGTGTGGGTGATTTGACTGTTGTGATTGCCAAAGCATTGGATGAATTTAAAGAGTTCTGCATTGTAAATGCTGCAAATGAGCATATGTCTCATGGTGGAGGCGTTGCGAAGGCAATTGCAGACTTTTGTGGACCTGACTTTGTGGAATATTGTGAAGACTATGTTAAGAAACATGGACCACAACAAAGACTTGTTACACCTTCATTTGTCAAGGGCATTCAATGTGTGAATAATGTAGTAGGACCTCGCCATGGAGACAGCAACTTGCGTGAGAAGCTTGTGGCTGCTTACAAGAAGGTTCTTGTAGATGGCGTCTTCAATTATGTTGTACCAGTTCTCTCGTCAGGAATCTTTGGTGTGGATTTTAAAATGTCAATAGACGCAATGCGTGAAGCCTTTGATGGTTGCGACATACGTGTCCTCTTGTTCTCTCTGAGTCCAGAACACATCGATTATTTCAATGCAACTTGTAAGCAGAAGACACTTTATCTTACGGAGGATGGTGTTAAATACCGCTCCATTGTTGTAAAACCTGGTGACTCATTGATTCAATTTAGACAGGTTTTTGCTAAAAATAAGGCAGTCTTTACAGCTGATGATGTTGAGGATAAAGAAATCCTCTTCGTTCCTACTACTGATAAGACTGTTCTTGAGTATTATCATTTAGATGCGCAAAAGTATGTGATATATTTACAAACTCTTGCGCAGAAATGGAATGTCCAATATAGGGACAATTTTATTATACTAGAGTGGCGTGATGGAAACTGCTGGGTTAGTTCAGTAGCAGTACTCCTTCAAGCTGCCAAAATTAGGTTTAGAGGTTTTCTTGCAGAAGCATGGGCTAAATTCCTAGGTGGTGATCCTACGGAGTTTGTAGCTTGGTGTTATGCGAGTTGCAATGCTAAAGTTGGTGATTTTTCAGATACCAATTGGCTTTTGGCTAATTTGGCAGAACATTTTGATGCAGACTACACGAACGCACTTCTTAAGAAGCGTGTGTCTTGTAACTGTGGTGTAAAGAGTTATGAACTTAGGGGCCTTGAAGCTTGTATACAACCAGTAAAGGCACCTAACCTGCTACATTTTAAGACGCAATATTCAAATTGCTCAATCTGTGGTGCAAATAGTACGGATGAAGTAATAGAAGCTTCACTACCATACTTGTTGCTCTTTGCTACTGATGGCCCTGCTGCAGTTGATTGTGATGAAAATGCTGTAGGGACTGTTGTTTTCATTGGATCTACTAATAGTGGCCATTGTTATACACAAGCCATAGATAAGGCTTTTGATAATCTTGCTAAGGACAGAAAATTTGGAAAGAAGTCGCCTTACATTACAGCAATGTATATGCGCTTTTCTCTTAAGAGTGAAAATCCTTTACCTGTTGTTAAACAGAGTAAGGGTAAAACTAAGGTAGTAAAAGAAGATGTTTCTAACCTCGCTACTAGTTCTAAGGTTAGTTTTGATGATCTTACTGACTTTGAACATTGGTATGATAGCAACATCTATGAAAGTCTTAAAGTGCAGGAAACACCTGACACTTTTGATGGGTATGTGTCATTTACAACAAAGGAAGATTCTAAGTTGCCACTGACACTTAAAGTTAGAGGTATTAAATCAGCTGTTGACTTTAGGTCGAAGGATGGTTTCACGTACAAGTTAACACCTGATACTGATGAAAATTCAAAAGCACCAGTCTACTATCCAGTCTTGGACGCTATTAGTCTTAAGGCGATATGGGTGGAAGGTAATGCTAATTTTGTTGTTGGACATCCAAATTGTTATAGTAAGTCTCTTCGCATTCCTACTTTTTGGGAAAGTGCTGAGAGCTTTTTTAAAATAGGTGATAAAATTGATGGTGTAACTATGGGCCTGTGGCGTGCAGAACACCTTAATAAACCTAATCTTGAGAGAATTTTCAACATTGCTAAGAAGGCTATTGTTGGGTCTAGTGTTGTTACTACACAATGTGGTAAATTAATTAGTAAAGCAGCTACATTCATTGCTGATAAAGTAGGTGGTGGTGTAGTTCGCAATATTACAGATAGTATTAAGGGTTTTTTTGGGTTTACACGTGGGCATTTTGAATTGTCTCCACAATTCATAAAAACACTTATATTCTTCTTCTTTTACTTTATAAAGGCTAGCGCCAAGAGTCTAGTTTCTAGCTATAAGAGAGTGTTATGTAAGGTGGTATTTGCCACTTTACTTATAGTGTGGTTTATTTACACAAGTAATCCAGTAATTTTTACTGGAATACGTGTGTTAGACTTTCTAGTTGAAGGTTCTTTATGTGGTCCTTATAATGACTACGGTAAAGATTCTTTTGATGTGTTACGCTATTGTGCAGATGACTTTACTTGTCGTGTGTGTCTACATGACAGAGATTCTCTTCATTTGTATAAACATGCATATAGCGTAGAACAGATTTATAAAGCTGCAAGTTCTGGCATTGTTTTTAATTGGAATTGGCTTTATTTGGTCTTTTTAATTTTATTTGTTAAGCCAGTAGCAGGTTTTGTTATTATTTGCTATTGTGTTAAGTATTTGGTATTGAATTCAACTGTTCTGTTAACTGGTGTAGGTTTTCTGGACTGGTTTGTTCAAACAGTTTTTAATCACTTTAACTTTATGGGTGCAGGATTTTATTTCTGGCTCTTTTATAAGATATACATACAGGTGTATCATATACTGTATTGTAAAGACGTAACATGTGAAGTGTGTAAGAGAGTTGCACGCAGTAATAGGCAAGAGGTTAGTGTTGTTGTTGGTGGACGCAAGCAAATAGTGCATGTTTATACCAACTCTGGCTACAAATTTTGTAAGAAACATAACTGGTATTGTAGAAATTGTGATGATTATGGTCACCAAAATACATTTATGTCTCCAGAAGTTGCTGGTGAGCTTTCTGAAAAGCTTAAACGCCATGTTAAACCTACAGCATATGCTTACCATGTTGTGGATGAAGCATGCTTAGTTGATGATTTTGTCAATTTAAAATATAAAGCTGCAATTCCTGGTAAGGATAGTGCACCTCTTGCAGTTAAATGTTTCAGTATTACAGATTTCTTGAAGAAAGCTGTTTTTCTTAAAGATGCACTGAAATGTGAACAAATATCTAATGATGGTTTTATAGTGTGTAATACACAGAGTGCGCATGCATTAGAGGATGCAAAGAATGCTGCCATATATTATGCGCAATATCTGTGTAAACCAATACTTTTACTTGACCAGGTGCTCTATGAGCAATTAGTAGTTGAGCCTGTGTCTAAGAGTGTTGTAGATAAGGTGTGTAGCATCCTGTCTAATATAATATCTGTAGATACTGCAGCTCTAAATTACAAGGCAGGTACACTTCGTGATGCCCTGCTTTCTATTACTAAAGATGAAGAAGCCGTAGATATGGCTATCTTCTGTCATAATCATGATGTGGAATACACTAGTGATGGTTTTACTAATGTGATACCATCATATGGTATAGACACTGATAAATTAACACCTCGTGATAGAGGGTTTTTGATAAATGCAGATGCTTCTATTGCTAACCTAAGAGTTAAAAATGCTCCACCGGTGGTATGGAAGTTTTCTGATCTTATTAAGTTGTCTGACAGTTGTCTTAAATATTTAATTTCAGCTACTGTCAAGTCAGGAGTTCGTTTCTTTATAACAAAGTCTGGTGCTAAGCAGGTTATTTCTTGTCACACACAGAAATTGTTGGTAGAGAAAAAGGCTGGTGGTATCATAGGTGGTACTTTTAATTGGTTCAAGAGTTGTTGTAAATGGCTCTTGATATTTTATGTACTTTTTACATTGTGTTGTTTGGGTTATTATCATATGGAGATGAATAAAATTTTTGTTCATCCCATGTATGATGTTAACTCTACAATGCATGTTGAAGGTTTTAAGGTTATAGATAAAGGTGTTATTAGAGACATTGTACCAGAGGATGCTTGCTTCTCTAATAAGTTTGCTAATTTTGATGCTTTTTGGGGCAAATCATATGAAAATAGTAGAGACTGTCCAATAGTAACGGCCATTATAGACGGTGCTGGAACAGTAGCTGCTGGTGTTCCTGGGTTCGTAGATTGGGTCATGAATGGTGTAATGTTTGTACACATGGCACAAACTGATCGAAGACCTTGGTATGTCCCTGCTTGGTTTAATAGGGAAATTGTTGGTTACACTCAGGATTCAATTGTTACTGAAGGTAGTTTTTATACATCTATAGCTTTGTTTTCAGCAAGATGTTTATATTTAATAGCCAGCAATACACCACAGTTGTATTGTTTTAATGGTGATAGTGATGCACCTGGAGCCTTACCATTTAGTAGTATAATTCCTCATAGGGTTTATTTCCAACCTAATGGTGTTAGGCTTATAGTTCCTCAGCAAATAATGCATACACCCTATATAGTAAAGTTGTTGTCAGACAGCTATTGTAGAGGTAGTGTATGTGAGTACACTAAACCAGGTTACTGTATGTCGTTGAACTCCCAATGGGTGTTGTTTAATGATGAATACATAGGTCGACCTGGTGTCTTTTGTGGTTCTACTGTTAGAGAACTTGTGTTTAATATGGTTAGTACATTCTTTACTGGTGTTAACCCTAATATTTATATGCAGCTAGCAACTATGTTTTTAATATTAGTTATTGTTGTGTTAATTTTTGCAATGGTTATAAAGTTTCAAGGTGTTTTTAAAGCTTATGCAACCATTGTGTTTACAATAATGTTAGTTTGGGCTGTTAATGCATTTGTGCTATGTGTACATAGTTATAATAGTGTTGTAGCTGCTATACTACTTGTACTCTACTGCTATGCATCACTTGTTACAAGTCGCAATACTTCTATAATAATGCATTGCTGGCTTGTTTTTACTTTTGGTTTGATAGTACCTATATGGCTAGCTTGTTGCTACTTAGCATTTGTACTTTATGTTTATACACCTTTATTTTTCTGGTGTTACGGTACTACTAAAAATACTCGTAAGCTATATGATGGTAACGAGTTTGTTGGTAACTATGATCTCGCTGCGAAGAGTACTTTTGTTATTCGCGGTTCTGAGTTTGTTAAGCTTACGAACGAGATAGGTGATAAATTTGAAGCCTATCTCTCAGCGTATGCTAGACTTAAATATTACTCAGGCACAGGCAGTGAACAAGATTATTTGCAAGCTTGTCGTGCGTGGTTAGCTTATGCACTTGACCAATATAGAAATAGTGGTGTTGAAATTGTGTATACTCCACCGCGTTATTCTATTGGTGTTAGTAGATTACAAGCTGGTTTTAAGAAACTAGTTTGTCCTAGTAGTGCTGTTGAAAATTGCATTGTTAGTGTCTCTTACAGAGGTAATAATCTTAATGGACTGTGGCTAGGTGATGCTATCTACTGTCCGCGACATGTTCTAGGCAAGTTTTCAGGTGATCAATGGAGTGATGTACTTAATCTTGCTAATAATCATGAGTTTGAGGTTGTAACTCAAAATGGTGTTACTTTGAATGTTGTTAGTAGGCGGTTGAGAGGCGCAGTTTTAATTTTACAAACTGCTGTCGCCAATGCTGACACTCCTAATTATAAGTTTGTTAAAGCTAATTGTGGTGATAGTTTCACTATAGCTTGTTCTTATGGTGGTACAGTTGTGGGACTCTACCCTGTTACTATGCGTCCTAATGGTACTATTAGAGCTTCTTTCCTTGCAGGAGCTTGTGGCTCAGTTGGTTTTAATATAGAAAAGGGTGTAGTTACTTTCGTTTATATGCACCATCTTGAGTTACCTAATGCATTACACACTGGAACTGACCTATTTGGTGATTTCTATGGTGATTATGTGGACGAAGAGGTTGCACAAAGGGTGCCACCAGATAATTTAGTTACTAATAATATTGTAGCATGGCTTTATGCCGCAATTATTAGTGTTAAGGAGAGTAGCTTCTCACTGCCTAAATGGTTGGAGAGTACTACTGTCAGTGTTGAAGACTACAATAAATGGGCTGGTGATAATGGTTTTACACCATTTTCTACTAGTACTGCTATTACTAAATTAAGTGCTATAACGGGAGTAGATGTTTGTAAACTCCTTCGCACTATTATGGTAAAAAGTAGTCAATGGGGTAGTGATCCCATTTTAGGACAATATAATTTTGAAGATGAATTGACACCAGAGTCTGTTTTCAACCAGGTAGGTGGTGTTAGGTTACAGTCATCTATTGTAAGAAGAGCCACATCTTGGTTTTGGAGTAGATGTGTTTTAGCTTGCTTCTTATTTGTGTTGTGTGCTATTGTCTTGTTTACGGCATTACCACTTAAATACTATGTACATGCAGCTGTTATTTTGTTAACAGCTGTACTTTTTATTTCTTTTACTGTTAAACATGTTATGGCTTACATGGACACTTTCCTACTGCCTACATTGATTACAGTTATTATTGGAGCTTGTGCTGAAGTCCCTTTCATATACAACACTCTAATTAGTCAAGTTGTTATTTTCTTAAGTCAATGGTATGATCCTGTAGTCTTTGATACTATGGTGCCATGGATGTTATTGCCATTAGTATTGTACACTGCTTTTAAGTGTGTACAAGGTTGCTATATGGATTCTTTCAATACTTCTTTGTTAATGCTGTATCAGTCTATGAAGTTAGGTTTTGTTACTTACACCTCTACAAACACTCTTACTGCATATACAGAAGGTAATTGGGAGTTGTTTTTTGAGTTGGTTCACACTACTGTGTTGGCTAATGTTAGTAGTAATTCTTTAATTGGCTTATTTGTGTTTAAGTGTGCTAAATGGATGTTGTATTACTGCAATGCAACATACTTTAACAATTATGTGTTAATGGCAGTCATGGTTAATGGCTTGGGCTGGCTTTGCACTTGTTATTTTGGATTATATTGGTGGGTTAATAAGGTTTTTGGTTTAACCTTAGGTAAATATAACTTTAAAGTTTCAGTAGATCAATATAGGTATATGTGCTTGCACAAAATACCAGCACCTAAGAGTGTCTGGGATGTTGTTAAGACAAATATACTTATACAAGGAATTGGTGGTGATCGTGTGTTGCCTATTGCTACAGTTCAATCTAAATTGAGTGATGTAAAGTGTACAACTGTTGTTTTAATGCAGCTTTTGACTAAGCTTAATGTTGAAGCAAATTCAAAAATGCATGCTTATCTTGTTGAGTTACACAATAAAATCCTTGCATCTGATGATGTTGGAGAGTGCATGGATAATTTGTTGGGTATGCTTGTTACACTATTTTGTATAGATTCTACTATTGATTTGAGTGAGTATTGTGATGATATACTTAAGAGGTCAACTGTCTTACAGTCGGTTACTCAGGAGTTCTCATACATACCCTCTTATGCTGAATATGAAAGAGCTAAGAATCTTTATGAAAAGGTTTTAGCTGATTCTAAAAATGGTGGTGTAACACAGCAAGAGCTTGCTGCATATCGTAAAGCTGCCAATATTGCAAAGTCAGTTTTTGATAGAGACTTGGCTGTTCAAAAGAAGTTAGACAGCATGGCAGAACGTGCTATGACAACAATGTATAAAGAGGCGCGTGTCACTGATAGACGAGCAAAATTAGTTTCATCACTACATGCGTTACTTTTTTCAATGCTTAAGAAAATAGATTCTGAAAAGCTTAATGTCTTATTTGATCAGGCTAGTAGTGGTGTTGTACCTCTAGCTACCGTTCCAATTGTTTGTAGTAATAAGCTTACCCTTGTAATACCAGATCCAGAAACTTGGGTCAAGTGTGTAGAAGGTATGCATGTTACATACTCAACAGTTGTTTGGAATATAGACACTGTTATTGATGCTGATGGTACAGAGTTACATCCAACTTCTGTGGGTAGTGGATTGACATACTGTATAAGTAGTGATAATATAGCATGGCCTTTAAAGGTCAACTTGACTAGAAATGGGCATAATAAGGTTGATGCTGCTCTGCAGAATAATGAGCTTATGCCTCATGGTGTAAAAACAAAGGCTTGCGTTGCAGGTGTAGATCAAGCACATTGTAGCGTAGAGTCTAAATGTTATTATACTAATATTAGTGGTAATTCAGTTGTTGCTGCTATTACTTCTTCTAATCCAAATTTGAAGGTAGCTTCATTTTTGAACGAGGCAGGCAATCAGATTTATGTAGACCTAGACCCACCATGTAAATTTGGCATGAAGGTGGGTGACAAGGTTGAGGTTGTTTACTTGTATTTTATAAAGAATACAAGGTCAATTGTTAGGGGTATGGTACTTGGTGCTATATCTAATGTTGTTGTCTTACAGTCTAAAGGGCATGAAACAGAGGAAGTGGATGCCGTTGGCATTCTTTCACTTTGTTCATTTGCAGTAGACCCTGCTGATACATATTGTAAATATGTGGCAGCAGGTAATCAACCTTTAGGTAACTGTGTTAAAATGTTGACAGTACATAATGGTAGTGGCTTTGCTATAACATCAAAGCCAAGTCCAACTCCTGATCAGGATTCTTATGGAGGGGCTTCTGTGTGTCTCTATTGTAGAGCACATATAGCACACCCAGGAGGTGCAGGAAATTTAGATGGACGTTGTCAATTTAAAGGTTCTTTTGTGCAAATACCTACTACGGAGAAAGACCCCGTCGGATTCTGTCTACGTAATAAGGTCTGCACTGTTTGTCAGTGTTGGATAGGTCATGGGTGTCAGTGTGATGCAATTAGACAACAAAAACCTTCTGTTCAGTCAGTTGCTGGTGCATCTGATTTTGGTAAGAATTATTTAAACGGGTACGGGGTAGCAGTGAGGCTCGGCTGA
Protein
MASSLKQGVSPKPRDVILVSKDIPDQLCDALFFYTSHNPKDYADAFAVRHKFDRNLQTGKQFKFETVCGLFLLKGVDKITPGVPAKVLKATSKLADLEDIFGVSPFARKYRELLKTACQWSLTVDTLDARAQTLDEIFDPTEIFWLQVAAKVQVSAMAMRRLVGEVTAKVMEALGSNLSVLFQIVKQQIARIFQKALAIFENVSDLPQRVAALKMAFAKCAKSITVVVVERTLVVREFAGTCLASINGAVAKFFEELPNGFMGSKVFTTLAFFKEAAVKIVENIPNAPRGTKGFEVIGNAKGTQVVVRGMRNDLTLLDQKADVPVESEGWSAILEGHLCYVFKSGDRFYAAPLSGNFALHDVHCCERVVCLSDGVTPEINDGLVLAAIYSSFGVSELVAALKKGEPFKFLGHKFVYVKDEAVSFTLAKAATIADVLKLFQSARVQVDDVWSSFTEKSFEFWRRAYGKVRHLEELVKTHFCKAQMSIVVLAAVLGEGIWHLASQVIYKLGGLFTKVVDFCEKHWQGFCVQLKRAKLVVTENFCVLKGVAQHCFQLLLGAIHSLYKSFKKCVLGRIHGDLLFWKGGVHKIVQDGDEIWFDAIDSVDVEDLGVVKDKPIDFEVCEDVTLPENQPGHMVQIEEDGKNYMFFRFKRDENIYYTPMSQLGAINVVCKAGGKTVTFGGTTVKEIPPPDVVPIKVSIECCGEPWNTIFKKAYKEPIEVETDLTVEQLLSVIYEKMCDDLKLFPEAPEPPPFENVALVDKNGKDLDCIKSCHLIYRDYESGDDIEEDDAEEFDTDSADAEECDTASECEEEDEDTKVLALIQDPASNKYPLPLDDDYSVYNGAIVHKDALDVVNLPSGEETFVVSNCFEGAVKPLPQKVIDVLGDWGEAVDAQEQLCQQESTRVVFEKPVEDSTGSCEAMVERTVVEEHAVVPVVENKSDVVVYTPADLEVVKETAEEVDEFILISDVSKEEVVSQEKEEPQVEQHPTQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMSHGGGVAKAIADFCGPDFVEYCEDYVKKHGPQQRLVTPSFVKGIQCVNNVVGPRHGDSNLREKLVAAYKKVLVDGVFNYVVPVLSSGIFGVDFKMSIDAMREAFDGCDIRVLLFSLSPEHIDYFNATCKQKTLYLTEDGVKYRSIVVKPGDSLIQFRQVFAKNKAVFTADDVEDKEILFVPTTDKTVLEYYHLDAQKYVIYLQTLAQKWNVQYRDNFIILEWRDGNCWVSSVAVLLQAAKIRFRGFLAEAWAKFLGGDPTEFVAWCYASCNAKVGDFSDTNWLLANLAEHFDADYTNALLKKRVSCNCGVKSYELRGLEACIQPVKAPNLLHFKTQYSNCSICGANSTDEVIEASLPYLLLFATDGPAAVDCDENAVGTVVFIGSTNSGHCYTQAIDKAFDNLAKDRKFGKKSPYITAMYMRFSLKSENPLPVVKQSKGKTKVVKEDVSNLATSSKVSFDDLTDFEHWYDSNIYESLKVQETPDTFDGYVSFTTKEDSKLPLTLKVRGIKSAVDFRSKDGFTYKLTPDTDENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNCYSKSLRIPTFWESAESFFKIGDKIDGVTMGLWRAEHLNKPNLERIFNIAKKAIVGSSVVTTQCGKLISKAATFIADKVGGGVVRNITDSIKGFFGFTRGHFELSPQFIKTLIFFFFYFIKASAKSLVSSYKRVLCKVVFATLLIVWFIYTSNPVIFTGIRVLDFLVEGSLCGPYNDYGKDSFDVLRYCADDFTCRVCLHDRDSLHLYKHAYSVEQIYKAASSGIVFNWNWLYLVFLILFVKPVAGFVIICYCVKYLVLNSTVLLTGVGFLDWFVQTVFNHFNFMGAGFYFWLFYKIYIQVYHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYKFCKKHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKYKAAIPGKDSAPLAVKCFSITDFLKKAVFLKDALKCEQISNDGFIVCNTQSAHALEDAKNAAIYYAQYLCKPILLLDQVLYEQLVVEPVSKSVVDKVCSILSNIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVEYTSDGFTNVIPSYGIDTDKLTPRDRGFLINADASIANLRVKNAPPVVWKFSDLIKLSDSCLKYLISATVKSGVRFFITKSGAKQVISCHTQKLLVEKKAGGIIGGTFNWFKSCCKWLLIFYVLFTLCCLGYYHMEMNKIFVHPMYDVNSTMHVEGFKVIDKGVIRDIVPEDACFSNKFANFDAFWGKSYENSRDCPIVTAIIDGAGTVAAGVPGFVDWVMNGVMFVHMAQTDRRPWYVPAWFNREIVGYTQDSIVTEGSFYTSIALFSARCLYLIASNTPQLYCFNGDSDAPGALPFSSIIPHRVYFQPNGVRLIVPQQIMHTPYIVKLLSDSYCRGSVCEYTKPGYCMSLNSQWVLFNDEYIGRPGVFCGSTVRELVFNMVSTFFTGVNPNIYMQLATMFLILVIVVLIFAMVIKFQGVFKAYATIVFTIMLVWAVNAFVLCVHSYNSVVAAILLVLYCYASLVTSRNTSIIMHCWLVFTFGLIVPIWLACCYLAFVLYVYTPLFFWCYGTTKNTRKLYDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEIGDKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYRNSGVEIVYTPPRYSIGVSRLQAGFKKLVCPSSAVENCIVSVSYRGNNLNGLWLGDAIYCPRHVLGKFSGDQWSDVLNLANNHEFEVVTQNGVTLNVVSRRLRGAVLILQTAVANADTPNYKFVKANCGDSFTIACSYGGTVVGLYPVTMRPNGTIRASFLAGACGSVGFNIEKGVVTFVYMHHLELPNALHTGTDLFGDFYGDYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSLPKWLESTTVSVEDYNKWAGDNGFTPFSTSTAITKLSAITGVDVCKLLRTIMVKSSQWGSDPILGQYNFEDELTPESVFNQVGGVRLQSSIVRRATSWFWSRCVLACFLFVLCAIVLFTALPLKYYVHAAVILLTAVLFISFTVKHVMAYMDTFLLPTLITVIIGACAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMLLPLVLYTAFKCVQGCYMDSFNTSLLMLYQSMKLGFVTYTSTNTLTAYTEGNWELFFELVHTTVLANVSSNSLIGLFVFKCAKWMLYYCNATYFNNYVLMAVMVNGLGWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKIPAPKSVWDVVKTNILIQGIGGDRVLPIATVQSKLSDVKCTTVVLMQLLTKLNVEANSKMHAYLVELHNKILASDDVGECMDNLLGMLVTLFCIDSTIDLSEYCDDILKRSTVLQSVTQEFSYIPSYAEYERAKNLYEKVLADSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKIDSEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGMHVTYSTVVWNIDTVIDADGTELHPTSVGSGLTYCISSDNIAWPLKVNLTRNGHNKVDAALQNNELMPHGVKTKACVAGVDQAHCSVESKCYYTNISGNSVVAAITSSNPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTTEKDPVGFCLRNKVCTVCQCWIGHGCQCDAIRQQKPSVQSVAGASDFGKNYLNGYGVAVRLG
Summary
Similarity
Belongs to the coronaviruses polyprotein 1ab family.
Uniprot
Pubmed
EMBL
Proteomes
Pfam
Interpro
IPR002589
Macro_dom
IPR036333 NSP10_sf
IPR008740 Peptidase_C30
IPR032505 Corona_NSP4_C
IPR014822 NSP9
IPR018995 RNA_synth_NSP10_coronavirus
IPR013016 Peptidase_C30/C16
IPR036499 NSP9_sf
IPR040795 Nsp1a_N
IPR009003 Peptidase_S1_PA
IPR037230 NSP8_sf
IPR014828 NSP7
IPR038123 NSP4_C_sf
IPR014829 NSP8
IPR014827 Viral_protease
IPR037204 NSP7_sf
IPR036333 NSP10_sf
IPR008740 Peptidase_C30
IPR032505 Corona_NSP4_C
IPR014822 NSP9
IPR018995 RNA_synth_NSP10_coronavirus
IPR013016 Peptidase_C30/C16
IPR036499 NSP9_sf
IPR040795 Nsp1a_N
IPR009003 Peptidase_S1_PA
IPR037230 NSP8_sf
IPR014828 NSP7
IPR038123 NSP4_C_sf
IPR014829 NSP8
IPR014827 Viral_protease
IPR037204 NSP7_sf
SUPFAM
Gene 3D
ProteinModelPortal
PDB
6NUS
E-value=0,
Score=3073
Ontologies
KEGG
GO
GO:0008270 F:zinc ion binding
GO:0039520 P:induction by virus of host autophagy
GO:0019082 P:viral protein processing
GO:0019079 P:viral genome replication
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0016021 C:integral component of membrane
GO:0004197 F:cysteine-type endopeptidase activity
GO:0033644 C:host cell membrane
GO:0008242 F:omega peptidase activity
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0003723 F:RNA binding
GO:0039520 P:induction by virus of host autophagy
GO:0019082 P:viral protein processing
GO:0019079 P:viral genome replication
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0016021 C:integral component of membrane
GO:0004197 F:cysteine-type endopeptidase activity
GO:0033644 C:host cell membrane
GO:0008242 F:omega peptidase activity
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0003723 F:RNA binding
Subcellular Location
From MSLVP
Capsid
From Uniprot
Host cytoplasm
Host perinuclear region
Host membrane
Host perinuclear region
Host membrane
Topology
Length:
3951
Number of predicted TMHs:
18
Exp number of AAs in TMHs:
401.098669999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00306
outside
1 - 1724
TMhelix
1725 - 1744
inside
1745 - 1750
TMhelix
1751 - 1773
outside
1774 - 1841
TMhelix
1842 - 1864
inside
1865 - 1868
TMhelix
1869 - 1888
outside
1889 - 1897
TMhelix
1898 - 1920
inside
1921 - 2280
TMhelix
2281 - 2299
outside
2300 - 2361
TMhelix
2362 - 2384
inside
2385 - 2557
TMhelix
2558 - 2580
outside
2581 - 2584
TMhelix
2585 - 2607
inside
2608 - 2613
TMhelix
2614 - 2631
outside
2632 - 2650
TMhelix
2651 - 2673
inside
2674 - 3095
TMhelix
3096 - 3118
outside
3119 - 3122
TMhelix
3123 - 3140
inside
3141 - 3152
TMhelix
3153 - 3175
outside
3176 - 3189
TMhelix
3190 - 3212
inside
3213 - 3218
TMhelix
3219 - 3241
outside
3242 - 3255
TMhelix
3256 - 3278
inside
3279 - 3297
TMhelix
3298 - 3320
outside
3321 - 3951
Population Genetic Test Statistics
Genomic alignment in the CDS region
Multiple alignment of Orthologues
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| CHINA_HS_2019_MN908947 | |||
| CHINA_AVIAN_2008_NC_016995 | |||
| CHINA_AVIAN_2007_NC_016991 | |||
| CHINA_MURINE_2015_NC_035191 | |||
| CANADA_AVIAN_2007_NC_010800 |
Protein Protein |
YP_001941164.2 YP_001941165.1 |
|
| USA_PIG_2000_NC_038861 | |||
| CHINA_AVIAN_2007_NC_011549 | |||
| ITALY_PIG_2009_NC_028806 | |||
| GERMANY_PIG_2012_LT545990 | |||
| CHINA_AVIAN_2007_NC_016992 | |||
| CHINA_BAT_2005_NC_009657 | |||
| CANADA_HS_2003_NC_004718 | |||
| CHINA_BAT_2014_NC_030886 | |||
| CHINA_BAT_2005_NC_018871 | |||
| USA_MURINE_2009_NC_012936 | |||
| CHINA_RABBIT_2006_NC_017083 | |||
| UK_PIG_2000_NC_003436 | |||
| ROMANIA_PIG_2015_LT898435 | |||
| ROMANIA_PIG_2015_LT898436 | |||
| GERMANY_PIG_2015_LT898444 | |||
| GERMANY_PIG_2015_LT898414 | |||
| GERMANY_PIG_2015_LT898439 | |||
| GERMANY_PIG_2015_LT898413 | |||
| GERMANY_PIG_2015_LT898412 | |||
| GERMANY_PIG_2015_LT898411 | |||
| GERMANY_PIG_2015_LT898416 | |||
| GERMANY_PIG_2015_LT898443 | |||
| GERMANY_PIG_2015_LT898420 | |||
| GERMANY_PIG_2015_LT898408 | |||
| GERMANY_PIG_2015_LT898423 | |||
| GERMANY_PIG_2015_LT898432 | |||
| GERMANY_PIG_2015_LT898409 | |||
| GERMANY_PIG_2015_LT898425 | |||
| GERMANY_PIG_2015_LT898446 | |||
| GERMANY_PIG_2014_LT898438 | |||
| GERMANY_PIG_2014_LT898440 | |||
| GERMANY_PIG_2014_LT900501 | |||
| GERMANY_PIG_2014_LT898427 | |||
| GERMANY_PIG_2014_LT898415 | |||
| GERMANY_PIG_2014_LT898421 | |||
| GERMANY_PIG_2014_LT898431 | |||
| GERMANY_PIG_2014_LT898410 | |||
| GERMANY_PIG_2014_LT900498 | |||
| GERMANY_PIG_2014_LT898430 | |||
| GERMANY_PIG_1978_LT897799 | |||
| GERMANY_PIG_2014_LT898447 | |||
| GERMANY_PIG_2014_LT898426 | |||
| GERMANY_PIG_2014_LT898417 | |||
| GERMANY_PIG_2014_LT900500 | |||
| GERMANY_PIG_2014_LT898445 | |||
| AUSTRIA_PIG_2015_LT898418 | |||
| AUSTRIA_PIG_2015_LT898441 | |||
| AUSTRIA_PIG_2015_LT898433 | |||
| AUSTRIA_PIG_2015_LT900502 | |||
| GERMANY_PIG_2015_LT900499 | |||
| BELGIUM_PIG_1980_LT906620 | |||
| BELGIUM_PIG_1977_LT905450 | |||
| SWITZERLAND_PIG_2003_LT905451 | |||
| BELGIUM_PIG_1978_LT906581 | |||
| UK_PIG_1987_LT906582 | |||
| CHINA_PIG_2009_NC_016990 | |||
| CHINA_PIG_2010_NC_039208 | |||
| KENYA_BAT_2010_KY073745 | |||
| KENYA_BAT_2010_NC_032107 | |||
| CHINA_AVIAN_2007_NC_016994 | |||
| EUROPE_MURINE_2004_AY700211 | |||
| CHINA_AVIAN_2007_NC_011550 | |||
| USA_MURINE_1997_NC_001846 | |||
| USA_MURINE_1998_NC_023760 | |||
| MID_EAST_HS_2012_NC_019843 | |||
| CHINA_AVIAN_2007_NC_016993 | |||
| CHINA_MURINE_2013_NC_032730 | |||
| USA_HS_2004_AY585228 | |||
| NETHERLAND_HS_2004_NC_005831 | |||
| CHINA_HS_2004_NC_006577 | |||
| EUROPE_HS_2000_NC_002645 | |||
| NETHERLAND_FERRET_2010_NC_030292 | |||
| JAPAN_FERRET_2013_LC119077 | |||
| USA_FELINE_2005_NC_002306 | |||
| CHINA_MURINE_2011_NC_034972 | |||
| CHINA_AVIAN_2007_NC_016996 | |||
| ARABIA_CAMEL_2015_NC_028752 | |||
| CHINA_AVIAN_2007_NC_011547 | |||
| CHINA_BAT_2012_NC_028824 | |||
| CHINA_BAT_2013_NC_028814 | |||
| CHINA_BAT_2013_NC_028833 | |||
| CHINA_BAT_2011_NC_028811 | |||
| USA_BOVIN_2001_NC_003045 | |||
| CHINA_MURINE_2012_NC_026011 | |||
| GERMANY_ERINACEINAE_2012_NC_022643 | |||
| GERMANY_ERINACEINAE_2012_NC_039207 | |||
| UK_HS_2012_NC_038294 | |||
| AMERICA_WHALE_2007_NC_010646 | |||
| CHINA_BAT_2013_NC_025217 | |||
| UGANDA_BAT_2013_NC_034440 | |||
| CHINA_BAT_2006_NC_009021 | |||
| CHINA_BAT_2008_NC_010438 | |||
| CHINA_BAT_2006_NC_009020 | |||
| CHINA_BAT_2006_NC_009019 | |||
| CHINA_BAT_2006_NC_009988 | |||
| USA_BAT_2006_NC_022103 | |||
| BULGARIA_BAT_2008_NC_014470 | |||
| CHINA_BAT_2008_NC_010437 | |||
| USA_AVIAN_2004_NC_001451 |
Protein Protein |
NP_066134.1 NP_040829.1 |
Copyright@ 2018-2023
Any Comments and suggestions mail to:
zhuzl@cqu.edu.cn,
mg@cau.edu.cn
渝ICP备19006517号
渝公网安备 50010602502065号
In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Change my password
Enter new password
Reenter new password
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to Login if with an account.
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.
Please check it and login later.
Welcome to use ASFVdb.