Strain

CHINA_AVIAN_2007_NC_011547 (Region: Hong Kong;  Strain: Bulbul coronavirus HKU11-934, complete genome.;  Date: 2007)

Gene

spike glycoprotein

Description

Annotated in NCBI,  spike glycoprotein

Location

NC_011547(+):19382-22879

GenBank Accession

YP_002308479.1

CDS

ATGCAGAGAGTTGTATTAATCTCTCTTTTTATACATCTTGCAGCGGCTTCCGTTGCAGATCGTATTTTAGATTTTCTGACCTTTCCTAATGGTCATAAATATTTATACCCTCATAGAGGTGACCTTGGACAGTTAAAGTCTAGGGTCAACTCTAACTATTTAAGAGATACTCGTTTGACATCTCTTAAACATGGTTATCTTACAGAAGACTTTCACATCTTCTCACCACTTTCTAACTCCACTATCCCTATTTCAGGACTACTGAGGAGTTATCAACCATTGTATTTGGCTTGTTATGTCCAAATAACAAACACAACACTTTCTATGTTTTTAGAGCCTTCAACAACATTTGATACTGCAGGTTGTACTGGTTCTAAATATCAAACTCATGATGCACTCCGCTTAATCCTCGATTTAAATGAGGAATCAAGTGCATCTATTAATATTACCACTACCAAAAACATTTTATATATTTTTGTTTGTAGTGATTCACAAGACTTCTCTAGGGCTCATAACAGTCCTTTACTTAAATCGCGCAATGCACAGTTGTATTGTTTTATTAACAATACATATATTGGTCCATTGCCAGCTAATTTAACAGATTTTACCATTTATCATACGGGTCAACTGTATGCAAATGGTTACTATTTAGGTGTTCTACCAGACACTGTTAAACAAGTTAGACTTATACAATCCAGTATACCGTCTAACTATACGTTCTTTGCTTTAGCAAATTTAACTGACACTCTTATTACTTTATCTAACACGACTATTACTAATGTTACCTATTGTGATAGGTCTACTTTGGACATGTTAGCGTGTCAGATTTCTAAACATTATGTTGATGATGGGTTTTACTCAGATCCACAAAAAACATCATTAGCATTACCACGTACTATTGTTACACTACCTAAAGTTGCTGAGCTTGAAATGGTTAATTTAACCATTAATGCCAGATATTCAGCTGGTGAGGCATCTGCAACTATAAACATCAATGGCAATGACACATTCTGTGTTACTAAGCCATATTTTCATATAAATGCCAAGTACACTTGTTCTGACTGTGTGTTAAACCTAAGGACAGACACTTGTAGTTTTGACATTAATGCCATTAACAATGGCATGTCATTTTCACAATTTTGTCTGAGCACTAAATCGGGCAGTTGTTCAATCACACTTGTAGCAACTAAATACTGGAACTATCAAATAGCACAAAAGCTGTATGTTACAGCCATTGAAGGTCAAACTTCTACTGGCACAACTGCAACTTCTGCACAAGCTATTGACAGCTCCAATATTGTTACTGATGTTTGTACGGACTACACTATTTATGGTGTGTCTGGTACGGGCATTATAACTCATTCTGATTTGGAATTGCATAATGGTATTGCATTCACTTCACCAACTGGTGAATTATTTGCATTCAAAAATACAACATCAGGTAAGTCTTTTCAAGTGACTCCTTGTGACTCACCTGCGCAACTTGTAGTTGTATCTAATACAATTGTTGGTGCCATTACCTCCAACAATATATCCAGCACTGGTAAGTTTACACGTACTATTGCTGCCTCTACATTTTATTATTCAACTAATGCCACTAATCTAACATGCACAGAACCAGTCCTCTCTTATGGACCAGTTAGTGTGTGTTCTGATGGTGCAATAGCTGAAACCTCATTCTTACAAGACTCCAGACCATCTATAGTCTCACTATATGATGGCGAAGTCGAAGTACCATCTGCATTCACTCTATCTGTACAGACAGAATACTTGCAGGTACAATCTGAACAAGTTGTTGTTGATTGCGCACGTTATGTGTGTAATGGTAATGCTCGGTGTACTAGGCTGCTTTCTCAGTACACTTCAGCATGCAGCAACATTGAATCAGCACTACATTCCTCTGCTCAATTAGATAGCAGAGAGATTACTAATATGTTCCAAACATCGTCTCAATCTCTCACGCTTGCTAACATTAGCAATTTTCAGAGTGATTACAACTTTACTAACATTATCACTTCTAAATCTGGTGGTCGTTCTGCTATAGAAGATCTATTATTTAACAAGGTTGTTACCAACGGACTAGGAACAGTAGACCAGGATTATAAAGCCTGTTCAAAAGACCTAGCTATTGCAGACCTTGTTTGTACACAATATTACAATGGCATCATGGTTTTGCCGGGTGTTGTTGATGCACAGAAAATGGCAATGTACACAGCTTCCTTAACAGGAGCTATGGTTTTTGGTGGTATGACGGCTGCTGCTGCTATACCGTTTTCAACAGCTGTTCAAGCTCGTTTGAATTATGTTGCCCTTCAAACTAATGTTTTACAAGAAAACCAGAAAATTCTTGCAGAATCATTTAACTCAGCAGTTGGCAACATATCATTGGCGCTTTCAGCAGTCAATGATGCCATTAAACAAACCTCTGAGTCTTTACTTACAGTGGCTACTGCCATTAATAAAATTCAAACAGTTGTTAATAGTCAAGGTGAGGCATTGTCTCATCTAACAGCACAACTGTCTAACAATTTCCAGGCTATATCGACTTCCATTCAGGATATCTATAATAGGCTGGATGAAGTTCAAGCAGATCAGCAAGTTGACAGACTCATCACCGGACGGCTTGCTGCACTTAATGCTTATGTAACTCAGCTACTAAACCAAATGTCTCAAATTAGACAGTCACGTTTGTTAGCTCAGCAGAAAATTAATGAGTGTGTAAAATCGCAGTCTTCCAGATATGGATTTTGTGGTAATGGTACACACTTGTTCTCACTAACCCAATCTGCACCAAATGGAATATTTTTCATGCATGCAGTTTTGGTTCCACAGCAATTCACACGTGTCAATGCATCAGCAGGCATATGTGTAGATGCAATTAAGGGTTATTCTTTACAACCTCAATTAATACTCTACCAGTACAATAATTCCTGGAGAGTAACACCACGTAACATGTATGAACCCAGAGTTCCACGTGCTGCAGATTTTATACCTCTTGTAGATTGCTCTGTAACTTATTACAATGTAACTGCGGAGGATTTACCAAATATTATACCTGACTATGTTGATGTTAATCAAACGGTCAGTGATATTATTAATTCATTACCAACACACCAAACACCCACTTGGAGTTTGGATCAGTATAACTACACAATCTTAAATCTCTCTCAGGAGATTAAAGATTTACAACTAAAATCCCAAAATCTCACTGACATTGCTGAGATAATGGAAACTTACATACAGAACCTTAATAAAACCATTGTTGATTTACAATGGCTTAACAAAGTTGAAACCTACCTTAAGTGGCCGTGGTATATTTGGCTAGCCATATTTTTAGCCATAGCCGCTTTTGCGTGTATTATTGTTACAATCTTCCTCTGCACCGGTTGCTGTGGAAGTTGCTTTGGCTGTTGTGGTGGTTGCTTCGGATTCTTCTCTAAGAAGAGACATCATTCCGATGAACCAACACCAGTATCATTTAAACTTAAAGAATGGTAG

Protein

MQRVVLISLFIHLAAASVADRILDFLTFPNGHKYLYPHRGDLGQLKSRVNSNYLRDTRLTSLKHGYLTEDFHIFSPLSNSTIPISGLLRSYQPLYLACYVQITNTTLSMFLEPSTTFDTAGCTGSKYQTHDALRLILDLNEESSASINITTTKNILYIFVCSDSQDFSRAHNSPLLKSRNAQLYCFINNTYIGPLPANLTDFTIYHTGQLYANGYYLGVLPDTVKQVRLIQSSIPSNYTFFALANLTDTLITLSNTTITNVTYCDRSTLDMLACQISKHYVDDGFYSDPQKTSLALPRTIVTLPKVAELEMVNLTINARYSAGEASATININGNDTFCVTKPYFHINAKYTCSDCVLNLRTDTCSFDINAINNGMSFSQFCLSTKSGSCSITLVATKYWNYQIAQKLYVTAIEGQTSTGTTATSAQAIDSSNIVTDVCTDYTIYGVSGTGIITHSDLELHNGIAFTSPTGELFAFKNTTSGKSFQVTPCDSPAQLVVVSNTIVGAITSNNISSTGKFTRTIAASTFYYSTNATNLTCTEPVLSYGPVSVCSDGAIAETSFLQDSRPSIVSLYDGEVEVPSAFTLSVQTEYLQVQSEQVVVDCARYVCNGNARCTRLLSQYTSACSNIESALHSSAQLDSREITNMFQTSSQSLTLANISNFQSDYNFTNIITSKSGGRSAIEDLLFNKVVTNGLGTVDQDYKACSKDLAIADLVCTQYYNGIMVLPGVVDAQKMAMYTASLTGAMVFGGMTAAAAIPFSTAVQARLNYVALQTNVLQENQKILAESFNSAVGNISLALSAVNDAIKQTSESLLTVATAINKIQTVVNSQGEALSHLTAQLSNNFQAISTSIQDIYNRLDEVQADQQVDRLITGRLAALNAYVTQLLNQMSQIRQSRLLAQQKINECVKSQSSRYGFCGNGTHLFSLTQSAPNGIFFMHAVLVPQQFTRVNASAGICVDAIKGYSLQPQLILYQYNNSWRVTPRNMYEPRVPRAADFIPLVDCSVTYYNVTAEDLPNIIPDYVDVNQTVSDIINSLPTHQTPTWSLDQYNYTILNLSQEIKDLQLKSQNLTDIAEIMETYIQNLNKTIVDLQWLNKVETYLKWPWYIWLAIFLAIAAFACIIVTIFLCTGCCGSCFGCCGGCFGFFSKKRHHSDEPTPVSFKLKEW

Uniprot

B6VDW0   B6VDW9   A0A2H5CUP5   A0A2Z4EVX9   A0A4V1DVY3   A0A4P8D758   + More
A0A0E3Y594   A0A1V0K0T0   X2F2I4   A0A3G4RHU8   H9BQY5   A0A2U9A1Q6   A0A0E3Y622   A0A222YVF2   A0A060ADD4   A0A140ESD7   A0A2Z5SFY0   A0A286NGL5   H9BQX8   A0A097EU72   A0A140ESF8   A0A2R3ZDM3   A0A191TBW1   X2G836   A0A191TBW7   A0A140ESD0   A0A0K2D282   A0A3G2YVT8   A0A075E2S0   A0A075E3N9   A0A140ES46   A0A4P8D777   A0A140ESG5   A0A0U2XU58   A0A060ADS8   A0A4D6C7T8   A0A1L3HEE6   A0A0D5Z8J4   A0A075E3D7   A0A2D0V093   A0A4D6CAA4   A0A2Z5SIX0   A0A2Z5SPD8   A0A162JKN4   A0A2H4PWI8   A0A141ZUZ5   A0A0D5Z9D1   A0A075E3P2   W8Q9Y7   A0A140ES88   A0A140ERM4   A0A2Z5SR48   A0A2R4STW6   A0A161HR42   A0A141ZUY3   A0A141ZUU0   A0A140ES81   A0A1C9C4I6   A0A0E3U229   X2GCV1   A0A5C0PWA5   A0A140ES53   A0A140ES74   A0A4D6C7P4   A0A1V0K0T3   A0A1V0K0T1   A0A346JFF5   A0A4V1E460   A0A1Z4F681   A0A145PFU0   A0A2U9A1I4   A0A2H5A4L6   A0A4D6C7P1   A0A4P8D760   A0A161CFJ6   A0A141ZV07   A0A1Y0DA17   A0A140ES60   A0A140ES95   A0A140ESA2   A0A343ERC8   A0A4P8D784   A0A075X774   A0A060A825   A0A1V0K0U1   A0A2U9A1Q8   A0A089FVZ2   A0A2U9A1G7   A0A0E3N634   A0A218PFD9   A0A0K0PUM7   A0A4P8D759   A0A145YP90   A0A140ESH2   A0A3R5UH96   A0A2L1DHA4   A0A1P8VJV3   A0A222YTS3   A0A0D5Z9C5   A0A514C920  

Pubmed

18971277    29872066    26584185    28345292    24723718    22278237    + More
25153521    29621617    29569144    24964136    26250097    30941894    25740769    29070693    26982324    24723704    27424024    24744332    28634353    25759498    25817405    26337879    27231358   

EMBL

FJ376619    ACJ12035.1    FJ376620    ACJ12044.1    MF041982    AUH28250.1    + More
MG812378    AWV67134.1    MK040449    QCI62290.1    MK040451    QCI62292.1    KP757890    AKC54428.1    KY078907    ARD25170.1    KJ567050    AHM88400.1    MH715491    AYU65233.1    JQ065043    AFD29194.1    MF461407    AWO67515.1    KP757892    AKC54442.1    MF431743    ASR75145.1    KJ584359    AIA61001.1    KR265860    KR265861    AML40867.1    AML40874.1    LC260039    BBA66312.1    MF095123    ASY98687.1    JQ065042    AFD29187.1    KM820765    AIT11900.1    KR265863    AML40888.1    MF280390    AVR48519.1    KX022602    ANI85825.1    KJ462462    KJ584355    KJ584358    KJ620016    KT381613    AHN16220.1    AIA60973.1    AIA60994.1    AIA99518.1    ALJ32185.1    KX022603    KX022604    KX022605    ANI85832.1    ANI85839.1    ANI85846.1    KR265859    LC260041    LC260042    LC260044    AML40860.1    BBA66326.1    BBA66333.1    BBA66347.1    KR131621    ALA13745.1    MG832584    AYP31078.1    KJ601778    AIB07793.1    KJ601777    AIB07785.1    KR265847    AML40776.1    MK040447    QCI62288.1    KR265864    AML40895.1    KT336560    ALS54086.1    KJ584357    AIA60987.1    MK478382    QBY26060.1    KY065120    APG38198.1    KP995357    AKA42984.1    KJ601780    AIB07807.1    KU665558    AML83916.1    MK478380    QBY26058.1    LC260040    BBA66319.1    LC260038    BBA66305.1    KR060082    ALL74100.1    KY436218    ATW75328.1    KU051641    KU051642    KU051650    KU051652    KU051653    KU051654    KU051656    AMN91621.1    AMN91627.1    AMN91676.1    AMN91688.1    AMN91694.1    AMN91700.1    AMN91712.1    KP995358    KT371500    KR265856    KR265857    AKA42985.1    ALZ48519.1    AML40839.1    AML40846.1    KJ601779    AIB07800.1    KJ481931    AHL45007.1    KR265853    AML40818.1    KR150443    AML40604.1    LC260043    BBA66340.1    MG242062    AVZ61082.1    KU981059    KU981060    ANA78450.1    KU051643    KU051651    AMN91633.1    AMN91682.1    KU051644    KU051645    KU051646    KU051647    KU051648    KU051649    AMN91639.1    AMN91645.1    AMN91651.1    AMN91657.1    AMN91663.1    AMN91670.1    KR265852    AML40811.1    KX118627    AOM53027.1    KP757891    AKC54435.1    KJ569769    AHN16227.1    MN064712    QEJ80684.1    KR265848    AML40783.1    KR265851    AML40804.1    MK478381    QBY26059.1    KY078911    ARD25174.1    KY078906    KY363867    ARD25169.1    ATV90793.1    MH708123    MH708124    MH708125    AXP32216.1    AXP32223.1    AXP32230.1    MK005882    MK330605    QCO76963.1    QDP14518.1    LC216914    BAY00723.1    KT945050    AMW02952.1    MF461408    AWO67516.1    KY513724    AUG59156.1    MK478383    QBY26061.1    MK040450    QCI62291.1    KR060083    ALL74101.1    KU051655    AMN91706.1    KY496312    ART84222.1    KR265849    KR265850    AML40790.1    AML40797.1    KR265854    AML40825.1    KR265855    AML40832.1    KY293678    ASK86341.1    MK040453    MK040455    QCI62294.1    QCI62296.1    KJ769231    AIH06857.1    KJ584356    AIA60980.1    KY078914    ARD25177.1    MF461406    AWO67514.1    KM012168    AIP90486.1    MF461409    AWO67517.1    KP981395    AKA97938.1    LC260045    BAZ95609.1    KT266822    AKQ63083.1    MK040454    QCI62295.1    KU984334    AMW88197.1    KR265865    AML40902.1    MK248485    QAA06990.1    MG835611    AVD29971.1    KX834352    APZ76698.1    MF431742    ASR75139.1    KP995356    AKA42983.1    MK355396    QDH76188.1   

Proteomes

UP000161619    UP000116644    UP000172024    UP000126862    UP000103330    UP000156468    + More
UP000147537    UP000117737    UP000137853    UP000103266    UP000114014    UP000132517    UP000122701    UP000124223    UP000149778    UP000152486    UP000156755    UP000118503    UP000151351    UP000129252    UP000160089    UP000097413    UP000118624    UP000163421    UP000161942    UP000172095    UP000108307    UP000120336    UP000150502    UP000104403    UP000102644    UP000158884    UP000131750    UP000170248    UP000141273    UP000144892    UP000169372    UP000174689    UP000148151    UP000171091    UP000136494    UP000154045    UP000130144    UP000116882    UP000139576    UP000118543    UP000152859    UP000115701    UP000100106    UP000112854    UP000162784   

Pfam

PF01601   Corona_S2
PF01600   Corona_S1

Interpro

IPR002552   Corona_S2
IPR002551   Corona_S1

ProteinModelPortal

B6VDW0   B6VDW9   A0A2H5CUP5   A0A2Z4EVX9   A0A4V1DVY3   A0A4P8D758   + More
A0A0E3Y594   A0A1V0K0T0   X2F2I4   A0A3G4RHU8   H9BQY5   A0A2U9A1Q6   A0A0E3Y622   A0A222YVF2   A0A060ADD4   A0A140ESD7   A0A2Z5SFY0   A0A286NGL5   H9BQX8   A0A097EU72   A0A140ESF8   A0A2R3ZDM3   A0A191TBW1   X2G836   A0A191TBW7   A0A140ESD0   A0A0K2D282   A0A3G2YVT8   A0A075E2S0   A0A075E3N9   A0A140ES46   A0A4P8D777   A0A140ESG5   A0A0U2XU58   A0A060ADS8   A0A4D6C7T8   A0A1L3HEE6   A0A0D5Z8J4   A0A075E3D7   A0A2D0V093   A0A4D6CAA4   A0A2Z5SIX0   A0A2Z5SPD8   A0A162JKN4   A0A2H4PWI8   A0A141ZUZ5   A0A0D5Z9D1   A0A075E3P2   W8Q9Y7   A0A140ES88   A0A140ERM4   A0A2Z5SR48   A0A2R4STW6   A0A161HR42   A0A141ZUY3   A0A141ZUU0   A0A140ES81   A0A1C9C4I6   A0A0E3U229   X2GCV1   A0A5C0PWA5   A0A140ES53   A0A140ES74   A0A4D6C7P4   A0A1V0K0T3   A0A1V0K0T1   A0A346JFF5   A0A4V1E460   A0A1Z4F681   A0A145PFU0   A0A2U9A1I4   A0A2H5A4L6   A0A4D6C7P1   A0A4P8D760   A0A161CFJ6   A0A141ZV07   A0A1Y0DA17   A0A140ES60   A0A140ES95   A0A140ESA2   A0A343ERC8   A0A4P8D784   A0A075X774   A0A060A825   A0A1V0K0U1   A0A2U9A1Q8   A0A089FVZ2   A0A2U9A1G7   A0A0E3N634   A0A218PFD9   A0A0K0PUM7   A0A4P8D759   A0A145YP90   A0A140ESH2   A0A3R5UH96   A0A2L1DHA4   A0A1P8VJV3   A0A222YTS3   A0A0D5Z9C5   A0A514C920  

PDB

6B7N     E-value=0,     Score=3563