Strain

CHINA_PIG_2009_NC_016990 (Region: China: Hong Kong;  Strain: Porcine coronavirus HKU15 strain HKU15-44, complete genome.;  Date: 2009)

Gene

spike glycoprotein

Description

Annotated in NCBI,  spike glycoprotein

Location

NC_016990(+):19317-22799

GenBank Accession

YP_005352831.1

CDS

ATGCAGAGAGCTCTATTGATTATGACCTTACTTTGTCTCGTTCGAGCAAAGTTTGCTGATGATCTATTCGATTTGCTCACCTTCCCGGGTGCACATCGCTTCTTACATAAACCCACGAGGAATTCCAGCAGTCTCTACTCGCGGGCTAATAATAATTTTGATGTTGGCGTTCTTCCTGGCTACCCCACTAAGAACGTTAACCTCTTCTCACCACTTACTAACTCTACTTTGCCCATTAATGGCCTTCATCGGAGTTATCAACCACTCATGCTGAATTGTCTTACTAAAATAACTAACCACACTCTCAGCATGTATCTCCTACCTAGTGAGATACAAACTTATAGCTGCGGCGGTGCCATGGTTAAATACCAGACACATGATGCAGTTCGTATCATTTTAGACCTCACTGCCACTGACCACATCTCTGTTGAAGTCGTTGGCCAACATGGTGAAAATTATGTGTTTGTTTGTAGTGAGCAGTTTAACTATACTACTGCATTACACAACTCTACCTTTTTCTCACTTAATTCTGAGCTTTATTGCTTTACTAATAACACCTACTTAGGTATTCTTCCACCTGATTTAACTGACTTTACGGTCTATCGTACTGGTCAGTTTTATGCTAATGGTTACCTTTTAGGTACTTTACCTATTACTGTTAACTATGTTAGGTTGTATCGGGGTCATTTGTCGGCCAATAATGCCCACTTTGCCCTAGCAAACCTAACCGATACACTCATAACACTTACCAATACTACTATATCGCAAATCACTTATTGTGATAAGTCAGTAGTTGATTCAATAGCATGCCAGCGCTCTTCTCACGAAGTGGAGGATGGGTTTTACTCTGACCCTAAATCTGCCGTTAGAGCTAGGCAACGTACTATTGTTACACTACCTAAGCTCCCTGAGCTTGAAGTAGTGCAGTTAAATATTTCTGCACACATGGATTTTGGCGAAGCCAGACTTGACAGCGTTACCATCAATGGTAACACATCCTATTGTGTCACTAAGCCTTACTTCAGGCTTGAAACTAACTTTATGTGTACAGGTTGCACTATGAATCTGCGCACTGATACCTGTAGTTTTGACCTGTCAGCAGTAAACAATGGCATGTCATTCTCTCAATTCTGTCTAAGCACTGAATCTGGTGCTTGTGAGATGAAAATTATTGTTACCTACGTATGGAATTACTTGCTAAGGCAGCGTTTGTATGTTACTGCTGTAGAAGGCCAGACTCACACTGGAACCACTTCAGTACATGCAACAGACACTTCTAGTGTAATCACTGATGTCTGCACTGACTACACTATCTATGGAGTCTCTGGTACTGGCATTATTAAGCCATCAGATCTCTTATTGCACAATGGCATAGCATTCACCTCTCCAACAGGTGAGCTTTATGCATTTAAAAATATAACCACTGGCAAAACCCTTCAGGTCTTACCGTGTGAAACCCCTTCTCAACTGATTGTGATAAACAACACCGTTGTCGGTGCTATCACATCCAGTAACTCAACTGAAAATAATAGGTTTACTACTACTATTGTCACACCTACTTTCTTTTATTCCACAAATGCCACCACCTTCAACTGCACCAAGCCTGTTTTGTCCTATGGACCCATCAGCGTGTGTAGTGATGGTGCAATTGCGGGAACATCCACATTACAGAATACTCGACCATCCATAGTTTCACTATACGATGGCGAAGTTGAAATACCATCTGCATTTTCTCTTTCTGTTCAGACGGAGTATTTGCAAGTTCAAGCAGAGCAAGTTATAGTTGATTGTCCTCAGTATGTATGCAATGGCAACAGCCGTTGTCTACAATTACTGGCACAATACACCTCAGCTTGCTCTAACATTGAAGCAGCTCTGCATTCCTCTGCACAGTTGGATAGCAGAGAGATTATAAATATGTTTCAAACATCAACACAGTCCTTGCAGTTAGCTAATATTACCAACTTCAAGGGTGACTACAATTTTAGCAGCATACTAACCACCAGACTTGGTGGCAGATCTGCTATTGAAGACCTTCTTTTTAATAAAGTTGTTACTAGTGGCCTTGGCACTGTTGATCAGGACTACAAAGCCTGCTCTAGAGACATGGCCATCGCTGATTTAGTTTGTTCCCAGTATTACAATGGCATCATGGTTCTACCTGGTGTTGTTGATGCTGAGAAAATGGCAATGTATACTGGCTCTCTTACTGGAGCTATGGTATTTGGGGGACTGACTGCTGCAGCGGCAATACCATTCGCTACAGCAGTACAAGCTCGCCTCAATTATGTCGCACTGCAAACAAATGTACTACAAGAAAACCAGAAAATTCTTGCAGAATCATTTAACCAAGCAGTTGGCAATATATCACTTGCACTATCTTCTGTTAATGATGCCATCCAGCAAACTTCTGAGGCTCTTAACACCGTAGCTATTGCTATTAAAAAGATTCAAACAGTTGTTAACCAGCAGGGTGAGGCATTATCACACCTGACTGCACAGCTGTCAAACAATTTTCAAGCAATTTCGACTTCTATTCAAGACATTTACAACCGTCTTGAGGAAGTAGAGGCTAACCAGCAAGTTGACCGTCTCATCACAGGACGGTTGGCTGCACTTAATGCATATGTTACTCAGTTACTCAATCAGATGTCTCAGATTAGACAATCTCGATTGTTAGCTCAGCAAAAGATTAATGAGTGTGTCAAATCTCAGTCGCCCAGATACGGTTTCTGTGGAAATGGCACACACATCTTCTCACTTACACAGACTGCACCAAATGGCATATTTTTCATGCATGCAGTGCTTGTACCCAACAAATTCACACGTGTCAACGCTTCTGCCGGCATTTGTGTGGATAATACGAGAGGCTACTCATTGCAGCCTCAACTTATACTCTACCAGTTTAATAACTCCTGGAGAGTTACACCTAGAAATATGTATGAACCCAGACTGCCCCGGCAAGCTGATTTCATACAATTAACTGATTGCAGCGTTACTTTTTACAACACAACCGCTGCTAATCTTCCCAATATTATTCCTGACGTCATAGATGTCAATCAAACAGTCAGTGATATTATTGACAATTTACCTACAGCAACACCTCCTCAGTGGGATGTTGGTATTTATAACAACACTATTCTCAACCTCACCGTTGAGATTAATGATCTACAAGAGCGGTCTAAAAACCTCTCACAGATTGCAGATCGTTTACAAAATTATATTGACAATCTTAACAATACTCTAGTTGACCTTGAATGGCTCAACAGAGTGGAAACTTACCTTAAATGGCCGTGGTATATATGGCTTGCCATTGCCCTGGCTCTTATTGCATTTGTGACAATCCTCATAACAATCTTTCTTTGTACTGGTTGTTGTGGTGGTTGCTTTGGTTGTTGTGGCGGTTGTTTTGGCCTTTTCTCTAAGAAGAAAAGGTATACCGACGACCAACCAACACCGTCCTTTAAGTTTAAGGAATGGTAG

Protein

MQRALLIMTLLCLVRAKFADDLFDLLTFPGAHRFLHKPTRNSSSLYSRANNNFDVGVLPGYPTKNVNLFSPLTNSTLPINGLHRSYQPLMLNCLTKITNHTLSMYLLPSEIQTYSCGGAMVKYQTHDAVRIILDLTATDHISVEVVGQHGENYVFVCSEQFNYTTALHNSTFFSLNSELYCFTNNTYLGILPPDLTDFTVYRTGQFYANGYLLGTLPITVNYVRLYRGHLSANNAHFALANLTDTLITLTNTTISQITYCDKSVVDSIACQRSSHEVEDGFYSDPKSAVRARQRTIVTLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTTSVHATDTSSVITDVCTDYTIYGVSGTGIIKPSDLLLHNGIAFTSPTGELYAFKNITTGKTLQVLPCETPSQLIVINNTVVGAITSSNSTENNRFTTTIVTPTFFYSTNATTFNCTKPVLSYGPISVCSDGAIAGTSTLQNTRPSIVSLYDGEVEIPSAFSLSVQTEYLQVQAEQVIVDCPQYVCNGNSRCLQLLAQYTSACSNIEAALHSSAQLDSREIINMFQTSTQSLQLANITNFKGDYNFSSILTTRLGGRSAIEDLLFNKVVTSGLGTVDQDYKACSRDMAIADLVCSQYYNGIMVLPGVVDAEKMAMYTGSLTGAMVFGGLTAAAAIPFATAVQARLNYVALQTNVLQENQKILAESFNQAVGNISLALSSVNDAIQQTSEALNTVAIAIKKIQTVVNQQGEALSHLTAQLSNNFQAISTSIQDIYNRLEEVEANQQVDRLITGRLAALNAYVTQLLNQMSQIRQSRLLAQQKINECVKSQSPRYGFCGNGTHIFSLTQTAPNGIFFMHAVLVPNKFTRVNASAGICVDNTRGYSLQPQLILYQFNNSWRVTPRNMYEPRLPRQADFIQLTDCSVTFYNTTAANLPNIIPDVIDVNQTVSDIIDNLPTATPPQWDVGIYNNTILNLTVEINDLQERSKNLSQIADRLQNYIDNLNNTLVDLEWLNRVETYLKWPWYIWLAIALALIAFVTILITIFLCTGCCGGCFGCCGGCFGLFSKKKRYTDDQPTPSFKFKEW

Uniprot

H9BQX8   A0A097EU72   X2G836   A0A140ESD0   A0A2Z5SPD8   A0A191TBW7   + More
A0A0D5Z9D1   A0A060ADD4   A0A075E2S0   A0A075E3N9   A0A140ESD7   A0A2Z5SR48   A0A191TBW1   A0A075E3D7   A0A140ES81   A0A162JKN4   A0A0D5Z8J4   A0A075E3P2   W8Q9Y7   A0A140ESG5   A0A140ES74   A0A140ES46   A0A140ESC3   A0A075X774   X2F2I4   A0A060ADS8   A0A060A825   A0A4D6CAA4   A0A4D6C7T8   A0A145PFU0   A0A140ES53   A0A2Z5SFY0   X2GCV1   A0A140ES60   A0A0D5Z9C5   A0A2Z5SIX0   A0A140ERM4   A0A0E3U229   A0A161CFJ6   A0A140ES95   A0A0D5Z9D9   A0A140ES88   A0A4D6C7P1   A0A0D5Z8S3   A0A5C0PWA5   A0A140ESF8   A0A140ESH2   A0A125QWU7   A0A0E3Y594   A0A0X9L8Q3   A0A2R4STW6   A0A1Z4F681   A0A089FVZ2   A0A0E3N634   A0A125QWU8   A0A4D6C7P4   A0A140ESA2   A0A0U2XU58   A0A346JFF5   A0A1Y0DA17   A0A2L1DHA4   A0A0E3Y622   A0A2H5CUP5   A0A222YVF2   A0A1S6L971   A0A2D0V093   A0A3G2YVT8   A0A2U9A1G8   A0A2H5A4L6   A0A218PFD9   A0A161HR42   A0A3R5UH96   A0A2S1NBZ5   A0A1W6AKU9   A0A2H5A4K1   H9BQY5   A0A1V0K0T0   A0A4V1DVY3   A0A3G4RHU8   A0A2U9A1Q6   A0A0K0PUM7   A0A0K2D282   A0A2U9A1I4   A0A1S6K7S2   A0A343ERC8   A0A4P8D772   A0A4P8D760   A0A2U9A1G7   A0A222YTS3   A0A1V0K0T3   A0A1P8VJV3   A0A2U9A1Q8   A0A1P8VJU5   A0A2R3ZDM3   A0A166XB95   A0A1V0K0T4   A0A4P8D759   A0A1V0K0T1   A0A1V0K0U1   A0A220W0L3  

Pubmed

22278237    24964136    25153521    29621617    25740769    29070693    + More
24723704    25759498    24723718    30941894    24744332    26584185    28634353    25817405    29695146    28345292    26337879    26250097    29569144   

EMBL

JQ065042    AFD29187.1    KM820765    AIT11900.1    KJ462462    KJ584355    + More
KJ584358    KJ620016    KT381613    AHN16220.1    AIA60973.1    AIA60994.1    AIA99518.1    ALJ32185.1    KR265859    LC260041    LC260042    LC260044    AML40860.1    BBA66326.1    BBA66333.1    BBA66347.1    LC260038    BBA66305.1    KX022603    KX022604    KX022605    ANI85832.1    ANI85839.1    ANI85846.1    KP995358    KT371500    KR265856    KR265857    AKA42985.1    ALZ48519.1    AML40839.1    AML40846.1    KJ584359    AIA61001.1    KJ601778    AIB07793.1    KJ601777    AIB07785.1    KR265860    KR265861    AML40867.1    AML40874.1    LC260043    BBA66340.1    KX022602    ANI85825.1    KJ601780    AIB07807.1    KR265852    AML40811.1    KR060082    ALL74100.1    KP995357    AKA42984.1    KJ601779    AIB07800.1    KJ481931    AHL45007.1    KR265864    AML40895.1    KR265851    AML40804.1    KR265847    AML40776.1    KR265858    AML40853.1    KJ769231    AIH06857.1    KJ567050    AHM88400.1    KJ584357    AIA60987.1    KJ584356    AIA60980.1    MK478380    QBY26058.1    MK478382    QBY26060.1    KT945050    AMW02952.1    KR265848    AML40783.1    LC260039    BBA66312.1    KJ569769    AHN16227.1    KR265849    KR265850    AML40790.1    AML40797.1    KP995356    AKA42983.1    LC260040    BBA66319.1    KR150443    AML40604.1    KP757891    AKC54435.1    KR060083    ALL74101.1    KR265854    AML40825.1    KP995359    AKA42986.1    KR265853    AML40818.1    MK478383    QBY26061.1    KP995360    KP995361    KP995362    AKA42987.1    AKA42988.1    AKA42989.1    MN064712    QEJ80684.1    KR265863    AML40888.1    KR265865    AML40902.1    KT371501    ALZ48520.1    KP757890    AKC54428.1    KT371503    ALZ48522.1    MG242062    AVZ61082.1    LC216914    BAY00723.1    KM012168    AIP90486.1    KP981395    AKA97938.1    KT371502    ALZ48521.1    MK478381    QBY26059.1    KR265855    AML40832.1    KT336560    ALS54086.1    MH708123    MH708124    MH708125    AXP32216.1    AXP32223.1    AXP32230.1    KY496312    ART84222.1    MG835611    AVD29971.1    KP757892    AKC54442.1    MF041982    AUH28250.1    MF431743    ASR75145.1    KY354363    KY354364    KX710201    KX710202    AQT34130.1    AQT34136.1    ASW22233.1    ASW22234.1    KU665558    AML83916.1    MG832584    AYP31078.1    MF461410    MF461411    MF461412    AWO67518.1    AWO67519.1    AWO67520.1    KY513724    AUG59156.1    LC260045    BAZ95609.1    KU981059    KU981060    ANA78450.1    MK248485    QAA06990.1    MG837130    MG837131    MG837132    MG837133    AWG96865.1    AWG96872.1    AWG96878.1    AWG96884.1    KY364365    ARJ31774.1    KY513725    AUG59164.1    JQ065043    AFD29194.1    KY078907    ARD25170.1    MK040449    QCI62290.1    MH715491    AYU65233.1    MF461407    AWO67515.1    KT266822    AKQ63083.1    KR131621    ALA13745.1    MF461408    AWO67516.1    KX443143    AQS99154.1    KY293678    ASK86341.1    MK040445    QCI62286.1    MK040450    QCI62291.1    MF461409    AWO67517.1    MF431742    ASR75139.1    KY078911    ARD25174.1    KX834352    APZ76698.1    MF461406    AWO67514.1    KX834351    APZ76690.1    MF280390    AVR48519.1    KU981061    KU981062    ANA78457.1    KY078916    ARD25179.1    MK040454    QCI62295.1    KY078906    KY363867    ARD25169.1    ATV90793.1    KY078914    ARD25177.1    KY293677    ASK86334.1   

Proteomes

UP000103266    UP000114014    UP000122701    UP000124223    UP000149778    UP000152486    + More
UP000156755    UP000118503    UP000120336    UP000150502    UP000147537    UP000129252    UP000160089    UP000117737    UP000137853    UP000172095    UP000144892    UP000104403    UP000102644    UP000118624    UP000171091    UP000097413    UP000147360    UP000139576    UP000126862    UP000161942    UP000118543    UP000148151    UP000174689    UP000136494    UP000154045    UP000131750    UP000169372    UP000130144    UP000158884    UP000132517    UP000162784    UP000172024    UP000152859    UP000115701    UP000116882    UP000163421    UP000156468    UP000170248    UP000103330    UP000100106    UP000151351    UP000180351    UP000180352   

Pfam

PF01600   Corona_S1
PF01601   Corona_S2

Interpro

IPR002551   Corona_S1
IPR002552   Corona_S2

ProteinModelPortal

H9BQX8   A0A097EU72   X2G836   A0A140ESD0   A0A2Z5SPD8   A0A191TBW7   + More
A0A0D5Z9D1   A0A060ADD4   A0A075E2S0   A0A075E3N9   A0A140ESD7   A0A2Z5SR48   A0A191TBW1   A0A075E3D7   A0A140ES81   A0A162JKN4   A0A0D5Z8J4   A0A075E3P2   W8Q9Y7   A0A140ESG5   A0A140ES74   A0A140ES46   A0A140ESC3   A0A075X774   X2F2I4   A0A060ADS8   A0A060A825   A0A4D6CAA4   A0A4D6C7T8   A0A145PFU0   A0A140ES53   A0A2Z5SFY0   X2GCV1   A0A140ES60   A0A0D5Z9C5   A0A2Z5SIX0   A0A140ERM4   A0A0E3U229   A0A161CFJ6   A0A140ES95   A0A0D5Z9D9   A0A140ES88   A0A4D6C7P1   A0A0D5Z8S3   A0A5C0PWA5   A0A140ESF8   A0A140ESH2   A0A125QWU7   A0A0E3Y594   A0A0X9L8Q3   A0A2R4STW6   A0A1Z4F681   A0A089FVZ2   A0A0E3N634   A0A125QWU8   A0A4D6C7P4   A0A140ESA2   A0A0U2XU58   A0A346JFF5   A0A1Y0DA17   A0A2L1DHA4   A0A0E3Y622   A0A2H5CUP5   A0A222YVF2   A0A1S6L971   A0A2D0V093   A0A3G2YVT8   A0A2U9A1G8   A0A2H5A4L6   A0A218PFD9   A0A161HR42   A0A3R5UH96   A0A2S1NBZ5   A0A1W6AKU9   A0A2H5A4K1   H9BQY5   A0A1V0K0T0   A0A4V1DVY3   A0A3G4RHU8   A0A2U9A1Q6   A0A0K0PUM7   A0A0K2D282   A0A2U9A1I4   A0A1S6K7S2   A0A343ERC8   A0A4P8D772   A0A4P8D760   A0A2U9A1G7   A0A222YTS3   A0A1V0K0T3   A0A1P8VJV3   A0A2U9A1Q8   A0A1P8VJU5   A0A2R3ZDM3   A0A166XB95   A0A1V0K0T4   A0A4P8D759   A0A1V0K0T1   A0A1V0K0U1   A0A220W0L3  

PDB

6B7N     E-value=0,     Score=3563