CoVDB Coronavirus Database (v2) Go to the lastest version >>
Found: 10 items
Strain Gene Type Sub Loc Uniprot Sublocation Topology
Pgo_410721 QHD43415.1 ORF1 Capsid Host membrane
outside 1 - 2223
TMhelix 2224 - 2246
inside 2247 - 2329
TMhelix 2330 - 2352
outside 2353 - 2356
TMhelix 2357 - 2379
inside 2380 - 2765
TMhelix 2766 - 2788
outside 2789 - 3035
TMhelix 3036 - 3058
inside 3059 - 3069
TMhelix 3070 - 3104
outside 3105 - 3118
TMhelix 3119 - 3141
inside 3142 - 3573
TMhelix 3574 - 3593
outside 3594 - 3602
TMhelix 3603 - 3622
inside 3623 - 3628
TMhelix 3629 - 3651
outside 3652 - 3674
TMhelix 3675 - 3694
inside 3695 - 3713
TMhelix 3714 - 3733
outside 3734 - 3742
TMhelix 3743 - 3765
inside 3766 - 3771
TMhelix 3772 - 3794
outside 3795 - 7090
Pgo_410721 QHD43416.1 S Host nucleus > host nucleolus. Host cytoplasm. Secreted. Host cell membrane
Accumulates in the endoplasmic reticulum-Golgi intermediate compartment, where it participates in virus particle assembly. Some S oligomers are transported to the host plasma membrane, where they may mediate cell-cell fusion.
referred by 1 publications
outside 1 - 1204
TMhelix 1205 - 1227
inside 1228 - 1264
Pgo_410721 QHD43417.1 Host nucleus > host nucleolus. Host cytoplasm. Secreted.

outside 1 - 33
TMhelix 34 - 56
inside 57 - 76
TMhelix 77 - 99
outside 100 - 102
TMhelix 103 - 125
inside 126 - 275
Pgo_410721 QHD43418.1 E Host nucleus. Host cytoplasm. Host Golgi apparatus membrane
The cytoplasmic tail functions as a Golgi complex-targeting signal.
referred by 1 publications
inside 1 - 11
TMhelix 12 - 34
outside 35 - 75
Pgo_410721 QHD43419.1 M Host nucleus. Host cytoplasm.

outside 1 - 19
TMhelix 20 - 39
inside 40 - 50
TMhelix 51 - 73
outside 74 - 77
TMhelix 78 - 100
inside 101 - 222
Pgo_410721 QHD43420.1 Host nucleus. Host cytoplasm.

outside 1 - 61
Pgo_410721 QHD43421.1 Host nucleus > host nucleolus. Host cytoplasm. Secreted.

outside 1 - 96
TMhelix 97 - 116
inside 117 - 121
Pgo_410721 QHD43422.1 Host nucleus. Host cytoplasm.

outside 1 - 121
Pgo_410721 QHD43423.2 N Host nucleus > host nucleolus. Host cytoplasm. Secreted. Host Golgi apparatus
Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding.
referred by 1 publications
outside 1 - 419
Pgo_410721 QHI42199.1 Single-Pass Membrane

outside 1 - 38
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