CoVDB Coronavirus Database (v3)   
Strain
Avian_JX195176 (Region: China;  Strain: Infectious bronchitis virus strain ck/CH/LZJ/111113, complete genome.;  Date: 3-Nov-11)
Gene
S protein
Description
Annotated in NCBI,  S protein
Location
JX195176(+):20371-23865
GenBank Accession
AFQ94222.1
 

Sequence

CDS
ATGTTGGGCAAACCGCTTTTACTAGTGACTCTTTGGTATGCACTATGTAGTGCTTTGCTTTATGATAAAAATACTTACGTTTACTACTACCAAAGTGCCTTTAGGCCTGGTCAAGGTTGGCATCTACATGGGGGTGCTTATGCAGTAGATAAGGTTTTTAATGGAACCAACAATGCAGTCAGTGTATCTGATTGCACTGCTGGTACTTTTTATGAAAGCTATAATATTTCTGCTGCTTCTGTAGCCATGACAGTACCACCTGCTGGTATGTCTTGGTCAGTTTCACAGTTTTGTACAGCTCATTGTAACTTCTCAGACTTTACAGTGTTTGTTACGCATTGTTTTAAAAGTCAACAAGGTAGTTGTCCATTGACAGGTATGATTCCTCAGAATCATATTCGTATTTCTGCTATGAGATCTGGATTTTTGTTTTATAATTTAACAGTTAGCGTATCTAAATACCCTAAATTTAAATCGCTTCAATGTGTTGGCAATTCTACATCTGTCTATTTAAATGGTGATCTTGTTTTCACTTCTAATGAAACAACTCACGTTACGGGTGCAGGCGTTTATTTTAAAAGTGGTGGGCCTGTAACTTATAAAGTTATGAAAGAAGTTAAAGCCCTAGCCTACTTTATTAATGGTACCGCACAAGAGGTTATTTTATGTGATAACTCACCTAGAGGTTTGCTTGCATGTCAGTATAACACTGGTAATTTTTCAGATGGATTCTACCCTTTTACTAATTCTTCTTTAGTTAAGGATAGGTTTATTGTATATCGAGAAAGTAGCACTAACACTACTTTAGAGTTAACTAATTTCACTTTTACTAATGTAAGTAATGCTTCTCCTAATTCAGGTGGCGTTGATACTTTCCAATTATATCAAACACATACTGCTCAGGATGGTTATTATAATTTTAATTTATCATTTCTGAGTAGTTTTGTGTATAAACCATCTGATTTTATGTATGGGTCATACCACCCAAATTGTAATTTTAGACCAGAGAATATTAATAATGGCTTATGGTTTAATTCATTATCTGTGTCACTTACTTACGGACCCATTCAAGGTGGTTGTAAGCAATCTGTTTTTAGTAATAAAGCAACTTGTTGCTATGCTTATTCTTACCGAGGTCCTACTAGATGTAAGGGTGTTTATAGAGGGGAGCTAACGCAATACTTTGAATGTGGACTTCTAGTTTATGTAACTAAGAGTGATGGCTCTCGTATACAAACTAGAAGTGAACCACTGGTGTTAACTCAATATAATTATAACAACATTACTTTAAATAAGTGTGTTGAGTATAATATATATGGTAGAGTTGGTCAAGGTTTTATTACTAATGTAACTGAAGCAACTGCTAATTATAGTTATCTAGCAGATGGTGGTTTAGCTATTTTAGATACTTCAGGAGCCATAGACATATTTGTTGTTCGAGGTGCATATGGTCTTAATTATTACAAGGTCAGTCCTTGTGAAGATGTTAACCAACAGTTTGTAGTGTCTGGTGGTAATATAGTTGGTATTCTTACTTCTAGAAATGAAACAGGTTCTGAACAGGTTGAGAACCAGTTTTATGTTAAGTTAACCAATAGCTCACATCGTCGCAGGCGTTCTATTGGCCAAAATGTAACAAGTTGTTCTTATGTTAGTTATGGCAGATTTTGTATTGAACCAGATGGTTCGTTAAAGCTGATAGTGCCAGAAGAATTGAAGCAGTTTGTGGCACCTTTACTTAATATTACTGAAAGTGTACTCATACCTAACAGTTTTAATTTGACTGTTACAGATGAGTACATACAAACACGTATGGATAAGGTCCAAATCAATTGCCTTCAATATGTTTGCGGCAATTCTTTGGAGTGTAGAAAATTGTTTCAACAATATGGTCCGGTTTGTGATAACATATTGTCTGTTGTAAATAGTGTTGGTCAAAAAGAAGATATGGAACTTTTAAGTTTCTATTCTTCTACTAAACCAGCTGGTTATAATGCACCTGTCTTTAGTAATATTAGTACTGGTGATTTTAATATTTCTCTTTTATTAACACCACCTAGTAGTCCTAGAGGTCGTTCTTTTATAGAAGATTTGTTATTTACAAGTGTTGAAACAGTTGGTTTGCCAACTGATGCTGAATATAAAAAATGCACAGCAGGACCTTTAGGTACTCTTAAGGATCTTATCTGTGCTAGGGAATATAATGGTTTATTAGTGTTGCCTCCAATTATTACGGCGGATATGCAAACAATGTATACTGCTTCTTTAGTTGGTGCTATGGCTTTTGGTGGTATTACAGCAGCAGGTGCCATACCATTTGCAACTCAGATACAAGCCAGAATCAATCATTTGGGTATTACACAGTCTCTGTTATTGAAAAATCAAGAGAAAATTGCAGCTTCCTTTAATAAGGCCATTGGTCATATGCAGGAAGGTTTTAGAAGCACTTCGCTAGCATTACAACAGGTTCAAGACGTTGTTAATAAGCAGAGTGCTATTCTTACTGAAACTATGAATTCTCTTAATAAGAATTTTGGTGCTATTTCATCAGTAATTCAAGACATTTATGCGCAACTTGATGCAATTCAAGCAGATGCACAAGTTGACCGTCTTATTACTGGCAGACTCTCTTATCTCTCAGTGCTAGCCTCTGCTAAGCAGTCTGAGTACATCAGAGTTTCCCAACAACGTGAATTAGCCACTCAAAAAATTAATGAGTGTGTTAAATCACAATCTAATAGGTATGGTTTTTGTGGTAGTGGAAGACATGTTCTTTCGATACCACAAAATGCACCTAATGGTATAGTGTTTATACACTTTAGTTACACTCCAGAGAGTTTTGTTAATGTTACTGCAATAGTAGGTTTTTGTGTACAGCCTGCTAATGCTAGTCAGTATGCAATAGTGCCTGTTAATGGTAGAGGTATTTTTATACAAGTTAATGGTAGTTACTATATCACTGCACGTGATATGTATATGCCTAGAGACATTACTGCAGGAGATGTAGTTACTCTTACTTCTTGTCAAACAAATTATGTTAATGTAAATAAAACCGTCATTACTACATTTGTGGAAGATGACGATTTTGATTTTGATGATGAGTTGTCGAAATGGTGGAATGATACTAAGCATGAGCTACCAGACTTTGACGACTTCAATTATACAGTACCCATACTTAATATTAGTGGTGAAATTGATCATATTCAAGGTGTTATACAGGGTCTTAATGACTCCCTTGTAAACCTTGAAGAACTTTCAATACTTAAAACTTATATTAAGTGGCCTTGGTATGTTTGGCTAGCCATAGGCTTTGCTATTATTATTTTTATCCTTATTTTAGGATGGGTGTTTTTCATGACAGGTTGTTGTGGTTGTTGTTGTGGATGCTTTGGTATCATTCCTCTAATGAGTAAGTGTGGTAAGAAATCATCTTATTACACGACTTTTGATAATGATGTGGTGACTGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MLGKPLLLVTLWYALCSALLYDKNTYVYYYQSAFRPGQGWHLHGGAYAVDKVFNGTNNAVSVSDCTAGTFYESYNISAASVAMTVPPAGMSWSVSQFCTAHCNFSDFTVFVTHCFKSQQGSCPLTGMIPQNHIRISAMRSGFLFYNLTVSVSKYPKFKSLQCVGNSTSVYLNGDLVFTSNETTHVTGAGVYFKSGGPVTYKVMKEVKALAYFINGTAQEVILCDNSPRGLLACQYNTGNFSDGFYPFTNSSLVKDRFIVYRESSTNTTLELTNFTFTNVSNASPNSGGVDTFQLYQTHTAQDGYYNFNLSFLSSFVYKPSDFMYGSYHPNCNFRPENINNGLWFNSLSVSLTYGPIQGGCKQSVFSNKATCCYAYSYRGPTRCKGVYRGELTQYFECGLLVYVTKSDGSRIQTRSEPLVLTQYNYNNITLNKCVEYNIYGRVGQGFITNVTEATANYSYLADGGLAILDTSGAIDIFVVRGAYGLNYYKVSPCEDVNQQFVVSGGNIVGILTSRNETGSEQVENQFYVKLTNSSHRRRRSIGQNVTSCSYVSYGRFCIEPDGSLKLIVPEELKQFVAPLLNITESVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMELLSFYSSTKPAGYNAPVFSNISTGDFNISLLLTPPSSPRGRSFIEDLLFTSVETVGLPTDAEYKKCTAGPLGTLKDLICAREYNGLLVLPPIITADMQTMYTASLVGAMAFGGITAAGAIPFATQIQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQQVQDVVNKQSAILTETMNSLNKNFGAISSVIQDIYAQLDAIQADAQVDRLITGRLSYLSVLASAKQSEYIRVSQQRELATQKINECVKSQSNRYGFCGSGRHVLSIPQNAPNGIVFIHFSYTPESFVNVTAIVGFCVQPANASQYAIVPVNGRGIFIQVNGSYYITARDMYMPRDITAGDVVTLTSCQTNYVNVNKTVITTFVEDDDFDFDDELSKWWNDTKHELPDFDDFNYTVPILNISGEIDHIQGVIQGLNDSLVNLEELSILKTYIKWPWYVWLAIGFAIIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVTEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1721     Identity=80.52%     Cov(Q)=89.95%     Cov(P)=94.75%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1164
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
43.55525
Exp number, first 60 AAs:
0.825249999999999
Total prob of N-in:
0.03687
outside
1  -  1095
TMhelix
1096  -  1118
inside
1119  -  1164
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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