CoVDB Coronavirus Database (v3)   
Strain
Avian_KJ425490 (Region: China;  Strain: Infectious bronchitis virus strain ck/CH/LHB/111232, complete genome.;  Date: 21-Dec-11)
Gene
spike protein
Description
Annotated in NCBI,  spike protein
Location
KJ425490(+):20314-23802
GenBank Accession
AHX25938.1
 

Sequence

CDS
ATGTTGGTAACACCTCTTTTACTAGTGACTCTTTTGTGTGCACTATGTAGTGCTGCTTTGTATGACAGTAGTTCTTACGTGTACTACTACCAAAGTGCCTTCAGACCACCTGATGGTTGGCATTTACATGGGGGTGCGTATGCGGTTGTTAATATTTCTAGTGAATCTAATAATGCAGGCTCTTCATCTGGGTGTACTGTTGGTATTATTCATGGTGGTCGTGTTGTTAATGCTTCTTCTATAGCTATGACGGCACCGTCATCAGGTATGGCTTGGTCTAGCAGTCAGTTTTGTACTGCATACTGTAACTTTTCAGATACTACAGTGTTTGTTACACATTGTTACACACATGTTGGGTGTCCTATAACTGGCATGCTTCAACAGCATTCTATACGTGTTTCTGCTATGAAAAATGGCCAGCTTTTTTATAATTTAACAGTTAGTGTAGCTAAGTACCCTACTTTTAAATCATTTCAGTGTGTTAATAATTTAACATCCGTATATTTAAATGGTGATCTTGTTTACACCTCTAATGAGACCACAGATGTTACATCTGCAGGTGTTTATTTTAAAGCTGGTGGACCTATAACTTATAAAGTTATGAGAGAAGTTAGAGCCCTGGCTTATTTTGTTAATGGTACTGCACAAGATGTTATTTTGTGTGATGGGTCACCTAGAGGCTTGTTAGCATGCCAGTATAATACTGGCAATTTTTCAGATGGCTTTTATCCTTTTACTAATAGTAGTTTAGTTAAGCAGAAGTTTATTGTCTATCGTGAAGATAGTGTTAATACTACTTTTACGTTACACAATTTCACTTTTCATAATGAGACTGGCGCCAACCCAAATCCTAGTGGTGTCCAGAATATTCAAACTTACCAAACACAAACAGCTCAGAGTGGTTATTATAATTTTAATTTTTCCTTTCTGAGTAGTTTTGTTTATAAGGAGTCTAATTTTATGTATGGATCTTATCACCCAAGTTGTAATTTTAGACTAGAAACTATTAATAATGGTTTGTGGTTTAATTCACTTTCAGTTTCAATTGCTTACGGTCCTCTTCAAGGTGGTTGCAAGCAATCTGTCTTTAGTGGTAGAGCAACCTGTTGTTATGCTTACTCATATGGAGGTCCTTTGCTGTGTAAAGGTGTTTATTCAGGTGAGTTAGATCATAATTTTGAATGTGGACTGTTAGTTTATGTTACTAAGAGCGGTGGCTCTCGTATACAAACAGCCACTGAACCGCCAGTTATAACTCAACACAATTATAATAATATTACTTTAAATACTTGTGTTGATTATAATATATATGGCAGAACTGGCCAAGGTTTTATTACTAATGTAACCGACTCAGCTGTTAGTTATAATTATCTAGCAGACGCAGGTTTGGCTATTTTAGATACATCTGGTTCCATAGACATCTTTGTCGTACAAAGTGAATATGGTCTTAATTATTATAAGGTTAACCCTTGCGAAGATGTCAACCAGCAGTTTGTAGTTTCTGGTGGTAAATTAGTAGGTATTCTTACTTCACGTAATGAGACTGGTTCCCAGCCTCTTGAGAATCAGTTTTACATCAAAATCACTAATGGAACACGTCGTTTTAGACGTTCTATTACTGAAAGTGTTGAAAATTGCCCTTATGTTAGTTATGGTAAGTTTTGTATAAAACCTGATGGCTCAATTGCCACAATAGTACCAAAACAATTGGAACAGTTTGTGGCACCTTTACTTAATGTTACTGAAAATGTGCTCATACCTAACAGTTTTAATTTAACTGTTACAGATGAGTACATACAAACGCGTATGGATAAGGTCCAAATTAATTGCCTGCAGTATATTTGTGGCAATTCTCTGGAGTGCAGAAATTTGTTTCAACAATATGGTCCTGTTTGCGACAACATATTGTCTGTAGTAAATAGTGTTGGTCAAAAAGAAGATATGGAACTTTTGAATTTCTATTCTTCTACTAAGCCGGCTGGTTTTAATACACCAGTTCTTAGTAATGTTAGCACTGGTGAGTTTAATATTTCTCTTTTTTTAACAACGCCTAGTAGTCCTAGAAGGCGTTCTTTTATTGAAGACCTTCTATTTACAAGTGTTGAATCTGTTGGATTACCAACAGATGACGCATACAAAAATTGCACTGCAGGTCCTTTAGGCTTTCTTAAGGACCTTGTATGTGCTCGTGAATATAATGGTTTGCTTGTGTTGCCTCCTATTATAACAGCAGAAATGCAAACTTTGTATACTAGTTCTCTAGTAGCTTCTATGGCTTTTGGTGGTATTACTGCAGCTGGTGCTATACCTTTTGCCACACAACTGCAGGCTAGAATTAATCACTTGGGTATTACCCAGTCACTTCTTTTGAAGAATCAAGAAAAAATTGCTGCTTCCTTTAATAAGGCCATCGGTCATATGCAGGAAGGTTTTAGAAGTACATCTTTAGCATTACAACAAATTCAAGATGTTGTTAATAAGCAGAGTGCTATTCTTACTGAGACTATGGCATCACTTAATAAAAATTTTGGTGCCATTTCTTCTGTGATTCAAGAAATCTACCAGCAACTTGACGCCATACAAGCAAATGCTCAAGTGGATCGTCTTATAACTGGTAGATTGTCATCACTTTCTGTTTTAGCATCTGCTAAGCAGGCGGAGTATATTAGAGTGTCACAACAGCGTGAGTTAGCTACTCAGAAGATTAATGAGTGTGTTAAGTCACAGTCCATTAGGTACTCCTTTTGTGGTAATGGACGACATGTTTTAACCATACCGCAAAATGCACCTAATGGTATAGTGTTTATACACTTTTCTTACACTCCAGATAGTTTTGTTAATGTTACTGCAATAGTGGGTTTTTGTGTAAAGCCAGCTAATGCTAGTCAGTATGCAATAGTACCCGCTAATGGTAGGGGTATTTTTATACAAGTTAATGGTAGTTACTACATCACTGCACGAGATATGTATATGCCAAGAGCTATTACTGCAGGAGATATAGTTACGCTTACTTCTTGTCAAGTAAATTATGTAAGTGTAAATAAGACCGTCATTACTACATTCGTAGACAATGATGATTTTGATTTTAATGACGAATTGTCAAAATGGTGGAATGATACTAAGCATGAGCTACCAGACTTTGACAAATTCAATTACACAGTACCTATACTTGACATTGATAGTGAAATTGATCGTATTCAAGGCGTTATACAGGGTCTTAATGACTCTCTAATAGACCTTGAAAAACTTTCAATACTCAAAACTTATATTAAGTGGCCTTGGTATGTGTGGTTAGCCATAGCTTTTGCCACTATTATCTTCATCTTAATATTAGGATGGGTTTTCTTCATGACTGGGTGTTGTGGTTGTTGTTGTGGATGCTTTGGCATTATGCCTCTAATGAGTAAGTGTGGTAAGAAATCTTCTTATTACACGACTTTTGATAACGATGTGGTAACTGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MLVTPLLLVTLLCALCSAALYDSSSYVYYYQSAFRPPDGWHLHGGAYAVVNISSESNNAGSSSGCTVGIIHGGRVVNASSIAMTAPSSGMAWSSSQFCTAYCNFSDTTVFVTHCYTHVGCPITGMLQQHSIRVSAMKNGQLFYNLTVSVAKYPTFKSFQCVNNLTSVYLNGDLVYTSNETTDVTSAGVYFKAGGPITYKVMREVRALAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFTNSSLVKQKFIVYREDSVNTTFTLHNFTFHNETGANPNPSGVQNIQTYQTQTAQSGYYNFNFSFLSSFVYKESNFMYGSYHPSCNFRLETINNGLWFNSLSVSIAYGPLQGGCKQSVFSGRATCCYAYSYGGPLLCKGVYSGELDHNFECGLLVYVTKSGGSRIQTATEPPVITQHNYNNITLNTCVDYNIYGRTGQGFITNVTDSAVSYNYLADAGLAILDTSGSIDIFVVQSEYGLNYYKVNPCEDVNQQFVVSGGKLVGILTSRNETGSQPLENQFYIKITNGTRRFRRSITESVENCPYVSYGKFCIKPDGSIATIVPKQLEQFVAPLLNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYICGNSLECRNLFQQYGPVCDNILSVVNSVGQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLFLTTPSSPRRRSFIEDLLFTSVESVGLPTDDAYKNCTAGPLGFLKDLVCAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGGITAAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYQQLDAIQANAQVDRLITGRLSSLSVLASAKQAEYIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFSYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAGDIVTLTSCQVNYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYTVPILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVFFMTGCCGCCCGCFGIMPLMSKCGKKSSYYTTFDNDVVTEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1963     Identity=96.00%     Cov(Q)=90.36%     Cov(P)=95.02%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1162
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
38.1416899999999
Exp number, first 60 AAs:
8.05895999999999
Total prob of N-in:
0.36002
outside
1  -  1093
TMhelix
1094  -  1116
inside
1117  -  1162
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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