CoVDB Coronavirus Database (v3)   
Strain
Avian_KX266757 (Region: Taiwan;  Strain: Infectious bronchitis virus isolate 3575/08, complete genome.;  Date: 2008)
Gene
spike protein
Description
Annotated in NCBI,  spike protein
Location
KX266757(+):20439-23936
GenBank Accession
AOC59723.1
 

Sequence

CDS
ATGTTGGTGAAGTCACTGTTTTTAGTGACTCTTTTGTTTGCACTATCTAGTGCTAGTTTATATGATAATGATACGTACGTTTACTACTATCAGAGCGCCTTCAGACCGCCTAATGGTTGGCATTTAAATGGTGGCGCTTATGCAGTAGTAAATGTTTCTTCACAAACCAATAATGCAGGTATAGCTCCAGAATGCACTGTTGGTATTATTAGTGGTGATACAGTTTTTAATGCCTCTTCTATAGCTATGACAGCACCTGTAGGTCAAGGTATGCAGTGGTCCAAGTCACAATTTTGTACTGCACACTGCAATTTTTCTGATATTACAGTGTTTGTCACACATTGCTATGCTTCGGGCGCAGGTAAATGTCCTTTAACGGGCCTTATTCCAAAAGGTCATATTCGTATTTCTGCTATGCGGAATCATACTTTATTCTATAATTTAACAGTTAGTGTATCTAAGTACCCTACTTTTAAATCTTTGCAATGCGTTGATAATTTCACAGCTGTTTACTTAAATGGTGACCTTGTCTTCACTTCTAATCAGACGACAGACGTTATAAGTGCAGGTGTGTACTTTAAATCAGGTGGGCCTATAACCTATAAAGTTATGAAGGAATTTAAGGTTTTGGCTTATTTTGTTAATGGTACTGCACAAGATGTTATTTTGTGTGATGACACACCTAGAGGTTTGCTAGCATGTCAATATAATACTGGCAATTTCTCAGATGGTTTCTATCCTTTTACTAATAGTAGCTTAGTTAAGCAAAGGTTTGTTGTTTATCGTGAGAATAGTGTTAATACTACTCTTACTTTAACCAATTACACCTTTCATAATGAGACTAATGCCCAGCCTAATTCAGGTGGTGTTTATACTATCTCAACTTATCAAACAAAAACTGCTCAGAGTGGTTATTATAATTTTAATTTATCATTTCTGAGTAGTTTTGTGTATAAAGAGTCTAATTATATGTATGGGTCTTACCACCCACGATGTAGTTTTAGACCAGAAACTATTAACAATGGCTTGTGGTTTAATTCATTGGCAGTCTCATTAGCTTATGGCCCCCTTCAAGGTGGGTGTAAGCAATCGGTGTTTCAAGGCAGAGCTACTTGTTGTTATGCGTATTCCTATAACGGACCACGTATGTGTAAAGGTGTCTATAGTGGTCAGTTATTACAAGATTTTGAATGTGGACTGTTGGTTTATGTTACTAAGAGTGATGGCTCCCGTATACAAACAGCCACAAAACCACCGGTCATAACTCAACACAATTATAATAATATTACTTTAAATACTTGTGTTGATTACAATATATATGGCAGAGTTGGCCAAGGTTTTATTACTAATGTAACTGACTCCGCAGCTAGCTATAATTATTTAGCAGATGCTGGATTGGCAATTTTAGATACTTCAGGTGCCATAGACATTTTCGTTGTACAAGGTGAATATGGTCTCAATTATTATAAGGTTAACCCTTGTGAAGATGTTAATCAGCAGTTTGTAGTGTCAGGAGGCAAGTTAGTAGGCATTCTGACTTCTCGTAATGAAACTGGTTCTCAGCCTCTTGAAAATCAGTTTTATATTAAGTTGACTAATGGAAGTCGTCGTCTTAGACGTTCTATTAGTAGTAATGTTACTATTTGTCCATATGTTAGTTATGGCAGGTATTGCATTGAACCTGATGGTTCACTTAAACAAATAGTACCACAAGAATTACAACATTTCGTGGCACCTTTACTTAATGTTACAGAACATGTGCTCATTCCTAACAGCTTTAATTTGACTGTTACAGATGAGTACATTCAAACTCGTATGGATAAAGTTCAAATTAATTGCCTTCAATACGTTTGTGGCAATTCTATTGAATGCAGAAAATTGTTTCGGCAATATGGTCCTGTCTGTGACAACATATTGTCTGTAGTAAATAGTGTTGGTCAGAAAGAAGACATGGAACTTTTAAATTTCTATTCTTCTACTAAACCAAAAGGTTTTGACACACCAGTTCTGAGTAATGTTAGTACTGGTGCTTTTAATATTTCACTTTTGTTAACACCACCTAGTAGTCCTAGTGGGCGTTCTTTCATAGAAGATTTGTTATTTACAAGTGTTGAAACAGTTGGGTTGCCAACTGATGCCGAATATAAAAAATGCACAGCGGGACCTTTGGGTACTCTTAAAGATCTTATCTGTGCTAGGGAATATAATGGGTTACTAGTGTTGCCGCCAATTATTACGGCTGATATGCAAACTATGTATACTGCTTCGTTAGTAGGTGCTATGGCTTTTGGTGGCATTACATCAGCAGCAGCTATACCTTTTGCTACTCAGATTCAGGCAAGAATTAATCATCTTGGTATTACACAGTCTTTGTTAATGAAAAACCAAGAAAAGATTGCTGCTTCCTTTAATAAGGCCATTGGTCATATGCAGGAAGGTTTTAGAAGCACTTCGCTAGCATTACAACAGGTTCAAGATGTTGTTAATAAGCAGAGTGCTATTCTTATGGAAACTATGAATTCTCTTAATAAGAATTTTGGTGCCATTTCTTCAGTTATTCAAGACATCTATGCGCAACTTGATGCAATTCAGGCAGATGCTCAAGTTGATCGTCTTATTACTGGTAGACTATCGTCTCTCTCAGTGCTAGCGTCTGCTAAGCAGTCGGAATACCTTAGAGTATCACAACAGCGTGAGTTGGCTACTCAAAAAATTAATGAGTGTGTCAAGTCACAATCTACTAGGTATGGATTTTGTGGTAGTGGAAGACATGTTCTTTCAATACCACAAAATGCACCTAATGGTATAGTGTTTATACACTTTACATACACTCCAGAGAGTTTTGTTAATGTCACAGCAATAGTTGGCTTTTGTGTAAACCCACCTAATGCTAGTCAGTATGCAATAGTACCTGTTAATGATAGGGGTGTTTTTATACAAGTTAATGGTACATACTATATTACGTCACGTGATATGTATATGCCAAGAGATATTACAGCAGGAGATATAGTTACCTTGACTTCTTGTCAAGCAAACTATGTTAGTGTTAACAAAACCGTCATTACTACATTTGTGGATAACGATGATTTTGATTTTTACGATGAATTGTCAAAATGGTGGAATGATACTAAACATGAGTTACCAGACTTCGACGAGTTTAATTACACCATTCCAGTGTTGAATATTAGTAATGAGATTGACAGAATTCAAGAAGTAATACAGGGGCTTAATGACTCTCTTATAGACCTCGAAACACTCTCAATTCTCAAAACTTATATTAAGTGGCCTTGGTATGTATGGCTTGCCATAGCTTTTGCCGTTATTATCTTCATCCTAATATTGGGTTGGGTCTTTTTCATGACTGGATGTTGTGGTTGTTGTTGTGGATGTTTTGGCATCATTCCATTAATGAGTAAGTGTGGTAAGAAATCTTCTTACTATACGACTTTTGATAATGATGTGGTAACTGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MLVKSLFLVTLLFALSSASLYDNDTYVYYYQSAFRPPNGWHLNGGAYAVVNVSSQTNNAGIAPECTVGIISGDTVFNASSIAMTAPVGQGMQWSKSQFCTAHCNFSDITVFVTHCYASGAGKCPLTGLIPKGHIRISAMRNHTLFYNLTVSVSKYPTFKSLQCVDNFTAVYLNGDLVFTSNQTTDVISAGVYFKSGGPITYKVMKEFKVLAYFVNGTAQDVILCDDTPRGLLACQYNTGNFSDGFYPFTNSSLVKQRFVVYRENSVNTTLTLTNYTFHNETNAQPNSGGVYTISTYQTKTAQSGYYNFNLSFLSSFVYKESNYMYGSYHPRCSFRPETINNGLWFNSLAVSLAYGPLQGGCKQSVFQGRATCCYAYSYNGPRMCKGVYSGQLLQDFECGLLVYVTKSDGSRIQTATKPPVITQHNYNNITLNTCVDYNIYGRVGQGFITNVTDSAASYNYLADAGLAILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGKLVGILTSRNETGSQPLENQFYIKLTNGSRRLRRSISSNVTICPYVSYGRYCIEPDGSLKQIVPQELQHFVAPLLNVTEHVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSIECRKLFRQYGPVCDNILSVVNSVGQKEDMELLNFYSSTKPKGFDTPVLSNVSTGAFNISLLLTPPSSPSGRSFIEDLLFTSVETVGLPTDAEYKKCTAGPLGTLKDLICAREYNGLLVLPPIITADMQTMYTASLVGAMAFGGITSAAAIPFATQIQARINHLGITQSLLMKNQEKIAASFNKAIGHMQEGFRSTSLALQQVQDVVNKQSAILMETMNSLNKNFGAISSVIQDIYAQLDAIQADAQVDRLITGRLSSLSVLASAKQSEYLRVSQQRELATQKINECVKSQSTRYGFCGSGRHVLSIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPPNASQYAIVPVNDRGVFIQVNGTYYITSRDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFYDELSKWWNDTKHELPDFDEFNYTIPVLNISNEIDRIQEVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFAVIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVTEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1803     Identity=83.59%     Cov(Q)=90.47%     Cov(P)=95.38%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1165
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
39.0479
Exp number, first 60 AAs:
1.14719
Total prob of N-in:
0.05511
outside
1  -  1096
TMhelix
1097  -  1119
inside
1120  -  1165
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号
In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Cancel Go
Change my password
Enter new password
Reenter new password
Cancel Go
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Cancel Regist
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.
OK