CoVDB Coronavirus Database (v3)   
Strain
Avian_KX348115 (Region: China;  Strain: Infectious bronchitis virus strain ck/CH/LAH/120907, complete genome.;  Date: 12-Sep)
Gene
S protein
Description
Annotated in NCBI,  S protein
Location
KX348115(+):20371-23868
GenBank Accession
APU51847.1
 

Sequence

CDS
ATGTTGGGGAAGTCACTGTTTTTAGTGACCATTTTGTGTGCACTATGTAGTGCAAATTTGTTTGATTCTGCCAATAATTATGTGTACTACTACCAAAGTGCCTTTAGGCCTCCAAATGGATGGCATTTGCAAGGGGGTGCTTATGCAGTAGTGAATTCTACTAATTATACTAATAATGCCGGTTCTGCAAGTGAGTGCACTGTTGGTGTTATTAAGGACGTCTATAATCAAAGTGCGGCTTCCATAGCTATGACAGCACCTCCTCAGGGTATGGCTTGGTCTAAGTCACAATTTTGTAGTGCACACTGTAACTTTTCTGAAATTACAGTTTTTGTCACACATTGTTATAGTAGTGGTACAGGGTCTTGCCCTATAACAGGCATGATTGCACGTGATCATATTCGTATTTCTGCAATGAAAAATGGTTCTCTATTTTATAACTTAACAGTTAGCGTATCTAAATACTCTAGGTTTAAGTCTTTTCAATGTGTTAACAACCTCACATCTGTTTATTTAAATGGTGATCTTGTTTTTACTTCCAACAAAACTACTGATGTTACGTCAGCAGGTGTGTATTTTAAAGCAGGTGGACCTGTAAATTATAGTGTTATGAAAGAATTTAAGGTTCTTGCTTACTTTGTTAATGGTACAGCACAAGATGTAATTTTGTGTGACAATTCCCCTAAGGGTTTGCTAGCCTGTCAATATAACACTGGCAATTTTTCAGACGGCTTCTATCCTTTTACTAATACTACTTTAGTTAGGGACAAGTTCATTGTCTATCGTGAAAGTAGTGTTAATACTACTTTGACGTTAACTAATTTCACTTTTACTAATGTAAGTACTGCACAGCCTAATAGTGGTGGTGTTAGTACTTTTCATTTATATCAAACACAAACAGCTCAGAGTGGTTATTATAATTTTAATTTGTCATTTCTGAGTCAGTTTGTGTATAAGGCAAGTGATTTTATGTATGGGTCTTATCACCCTAGGTGTTCTTTTAGACCAGAAACCATTAATAGTGGTTTATGGTTTAATTCCTTGTCAGTTTCTCTTACTTATGGACCCCTACATGGAGGGTGTAAGCAATCTGTTTTTAGTGGTAAGGCAACGTGTTGTTATGCCTATTCTTATAATGGCCCAAGGGCATGTAAAGGTGTTTATTCAGGTGAATTAAGCAAGACTTTTGAATGTGGACTGTTGGTTTATGTTACTAAGAGTGATGGCTCTCGTATACAAACAGCCACAAAACCACCGGTCATAACTCAACACAATTATAATAATATTACTTTAAATACTTGTGTTGAGTACAATATATATGGCAGAGTTGGCCGAGGCTTTATTACTAATGTAACTGACTTCGCAGCTAGCTATAATTACTTAGCAGATGCTGGATTGGCTATTTTAGATACTTCAGGTGCCATAGACACTTTCTTTGTACAAGGTGAATATGGTCCCAATTATTATAAGGTTAACCCTTGTGAAGATGTTAACCAGCAGTTTGTAGTGTCAGGCGGTAAGTTAGTAGGCATTCTGACTTCTCGTAATGAAACTGGTTCTCAGCCTCTTGAAAATCAGTTTTATATTAAGTTAACTAATGGAAGCCGTCGTTTTAGACGTTCTATTAGTAGTAATGTTACTAGTTGTCCATATGTTAGTTATGGCAGGTATTGCATTGAACCTGATGGTTCACTTAAAAAAATAGTACCACAAGAATTAGAACATTTCGTGGCACCTTTACTTAATGTTACAGAATATGTGCTCATTCCTAACAGCTTTAATTTGACTGTTACAGATGAGTACATTCAAACTCGTATGGATAAAGTTCAAATTAATTGCCTTCAATATGTTTGTGGCAATTCTATTGAATGCAAAAAATTGTTTCGGCAATATGGCCCTGTCTGTGACAACATATTGTCTGTTGTAAATAGTGTTGGTCAGAAAGAAGACATGGAACTTTTACATTTCTATTCTTCTACTAAACCAAAAGGTTTTGATACACCGGTTCTGAGTAATGTTAGTACTGGTGCTTTTAATATTTCACTTTTGTTAACACCACCTAGTAGTCCTAGTGGGCGTTCTTTTATAGAAGATTTGTTATTTACAAGTGTTGAAACAGTTGGTTTGCCAACTGATGCTGAATATAAAAAATGCACAGCAGGACCTTTAGGTACTCTTAAGGATCTTATCTGTGCTAGGGAATATAATGGTTTATTAGTGTTGCCTCCAATTATTACGGCGGATATGCAAACAATGTATACTGCTTCTTTAGTTGGTGCCATGGCTTTTGGTGGTATTACAGCAGCAGGTGCCATACCATTTGCAACTCAGATACAAGCCAGAATTAATCATTTGGGTATTACACAGTCTCTGTTATTGAAAAATCAAGAGAAAATTGCAGCTTCCTTTAATAAGGCCATTGGTCATATGCAGGAAGGTTTTAGAAGCACTTCGCTAGCATTACAACAGGTTCAGGACGTTGTTAATAAGCAGAGTGCTATTCTTACTGAAACTATGAATTCTCTTAATAAGAATTTTGGTGCTATTTCATCAGTAATTCAAGATATTTATGCGCAACTTGATGCAATTCAAGCAGATGCACAAGTTGACCGTCTTATTACTGGCAGACTCTCTTCTCTCTCAGTGCTAGCTTCTGCTAAGCAGTCTGAGTACATCAGAGTTTCCCAACAACGTGAATTAGCCACTCAAAAAATTAATGAGTGTGTTAAATCACAATCTAATAGGTATGGTTTTTGTGGTAGTGGAAGACATGTTCTATCGATACCACAAAATGCACCTAATGGTATAGTGTTTATACACTTTAGTTACACTCCAGAGAGTTTTGTTAATGTTACTGCAATAGTAGGTTTTTGTGTACAGCCTGCTAATGCTAGTCAGTATGCAATAGTGCCTGTTAATGGTAGAGGTATTTTTATACAAGTTAATGGTAGTTACTATATCACTGCACGTGATATGTATATGCCTAGAGACATTACTGCAGGAGATATAGTTACTCTTACTTCTTGTCAAGTAAATTATGTTAATGTAAATAAAACCGTCATTACTACATTTGTGGAAGATGACGATTTTGATTTTGATGATGAGTTGTCGAAATGGTGGAATGATACTAAGCATGAGCTACCAGACTTTGACGACTTCAATTATACAGTACCCATACTTAATATTAGTGGTGAAATTGATCATATTCAAGGTGTTATACAGGGTCTTAATGACTCCCTTATAAACCTTGAAGAACTTTCAATACTTAAAACTTATATTAAGTGGCCTTGGTATGTTTGGCTAGCCATAGGCTTTGCTATTATTATTTTTATCCTTATTTTAGGATGGGTGTTTTTCATGACAGGTTGTTGTGGTTGTTGTTGTGGATGCTTTGGTATCATTCCTCTAATGAGTAAGTGTGGTAAGAAATCATCTTATTACACGACTTTTGATAATGATGTGGTGACTGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MLGKSLFLVTILCALCSANLFDSANNYVYYYQSAFRPPNGWHLQGGAYAVVNSTNYTNNAGSASECTVGVIKDVYNQSAASIAMTAPPQGMAWSKSQFCSAHCNFSEITVFVTHCYSSGTGSCPITGMIARDHIRISAMKNGSLFYNLTVSVSKYSRFKSFQCVNNLTSVYLNGDLVFTSNKTTDVTSAGVYFKAGGPVNYSVMKEFKVLAYFVNGTAQDVILCDNSPKGLLACQYNTGNFSDGFYPFTNTTLVRDKFIVYRESSVNTTLTLTNFTFTNVSTAQPNSGGVSTFHLYQTQTAQSGYYNFNLSFLSQFVYKASDFMYGSYHPRCSFRPETINSGLWFNSLSVSLTYGPLHGGCKQSVFSGKATCCYAYSYNGPRACKGVYSGELSKTFECGLLVYVTKSDGSRIQTATKPPVITQHNYNNITLNTCVEYNIYGRVGRGFITNVTDFAASYNYLADAGLAILDTSGAIDTFFVQGEYGPNYYKVNPCEDVNQQFVVSGGKLVGILTSRNETGSQPLENQFYIKLTNGSRRFRRSISSNVTSCPYVSYGRYCIEPDGSLKKIVPQELEHFVAPLLNVTEYVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSIECKKLFRQYGPVCDNILSVVNSVGQKEDMELLHFYSSTKPKGFDTPVLSNVSTGAFNISLLLTPPSSPSGRSFIEDLLFTSVETVGLPTDAEYKKCTAGPLGTLKDLICAREYNGLLVLPPIITADMQTMYTASLVGAMAFGGITAAGAIPFATQIQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQQVQDVVNKQSAILTETMNSLNKNFGAISSVIQDIYAQLDAIQADAQVDRLITGRLSSLSVLASAKQSEYIRVSQQRELATQKINECVKSQSNRYGFCGSGRHVLSIPQNAPNGIVFIHFSYTPESFVNVTAIVGFCVQPANASQYAIVPVNGRGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQVNYVNVNKTVITTFVEDDDFDFDDELSKWWNDTKHELPDFDDFNYTVPILNISGEIDHIQGVIQGLNDSLINLEELSILKTYIKWPWYVWLAIGFAIIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVTEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1745     Identity=83.19%     Cov(Q)=89.87%     Cov(P)=94.75%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1165
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
44.47535
Exp number, first 60 AAs:
1.54173
Total prob of N-in:
0.06923
outside
1  -  1096
TMhelix
1097  -  1119
inside
1120  -  1165
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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