CoVDB Coronavirus Database (v3)   
Strain
Porcine_KX834351 (Region: Viet Nam;  Strain: Porcine deltacoronavirus strain PDCoV/Swine/Vietnam/HaNoi6/2015, complete genome.;  Date: 10-Oct-15)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
KX834351(+):19306-22788
GenBank Accession
APZ76690.1
 

Sequence

CDS
ATGCAGAGAGCTCTATTGATTATGACCTTACTTTCTCTCGCTCGAGCAAAGTTTGCTGATGATCTACTCGATTTGCTCACCTTCCCGGGTGCACATCGCTTCTTACATAAACCCACGAGGAATTCCAGCAGTCTTTACTTGCGGGCTAATAATAATTTTGATGTTGGCGTTCTTCCTGGCTACCCCACTAAGAACGTTAACCTCTTTTCACCACTTACTAACTCTACTTTGCCTATTAATGGCCTTCATCGGAGTTATCAACCACTCATGCTGAATTGCCTTACTAAAATAACTAACCACACTCTCAGCATGTATCTCCTACCTAGTGAGATACAAACTTATAGCTGCGGCGGTGCTATGGTTAAATACCAGACACATGATGCAGTTCGTATCATTTTAGACCTCACTGCCATTGACCACATCTCTGTTGAAGTCGTTGGCCAACGTGGTGAAAATTATGTGTTTGTTTGTAGTGAGCAGTTTAACTATACCACTGCATTACACAACTCCACTTTCTTCTCACTTAATTCTGAGCTTTATTGCTTCACTAATAACACCTACTTAGGTATTCTTCCACCTGATTTAACTGACTTTACGGTCTATCGTACTGGTCAGTTCTATGCTAATGGTTACCTTTTAGGTACTCTACCTATTACCGTTAACTATGTTAGGTTGTATCGGGGTCATTTGGCGGCCAACAGTGCCCATTTTGCCCTTGCAAACCTCACCGATACACTCATAACACTTACCAATACTACTATATCGCAAATTACCTATTGTGATAAGTCAGTAGTTGATGCAATAGCATGCCAGCGCTCTTCTCATGAAGTGGAGGATGGGTTTTACTCTGACCCTAAATCCGCTGTTAGAGCTAGGCAACGTACTATAGTCACACTACCTAAGCTCCCTGAGCTTGAAGTAGTGCAGTTAAATATTTCTGCACACATGGATTTTGGCGAAGCCAGACTTGACAGCGTTACCATTAATGGTAACACATCCTATTGTGTCACTAAGCCTTACTTCAGGCTTGAAACTAACTTTATGTGTACAGGTTGCACTATGAATCTGCGCACTGATACTTGTAGTTTTGACCTGTCAGCAGTAAACAATGGCATGTCATTCTCCCAATTCTGTCTAAGCACTGAATCTGGTGCTTGTGAGATGAAAATTATTGTTACCTATGTATGGAATTACTTGCTAAGGCAGCGTTTGTATGTTACAGCTGTAGAAGGCCAGACTCACACTGGAACCACTTCAGTACATGCAACAGACACTTCTAGTGTAATCACTGGTGTCTGCACTGACTACACTATCTATGGAGTCTCTGGTACTGGCATTATTAAGCCATCAGATCTCTTATTGCACAATGGCATAGCATTCACCTCCCCCACAGGTGAGCTTTATGCATTTAAAAATATAACCACTGGCAAAACCCTCCAGGTCTTACCGTGTGAAACCCCTTCTCAACTGATTGTGATAAACAACACCGTCGTCGGTGCTATCACATCCAGTAACTCAACTGAAAATAATAGGTTTACTACCACTATTGTCACACCTACTTTCTTTTATTCCACAAATGCCACCACTTTCAACTGCACTAAGCCTGTTTTGTCCTATGGACCTATCAGCGTGTGTAGTGATGGTGCAATTGTTGGAACATCCACATTACAGAATACTCGACCATCTATAGTTTCACTATATGATGGCGAAATTGAAATACCATCTGCATTTTCTCTTTCTGTCCAGACAGAGTATTTGCAAGTTCAAGCAGAGCAAGTTATAGTTGATTGTCCTCAGTATGTATGCAATGGCAATAGCCGTTGTCTACAATTACTGGCACAATACACCTCAGCTTGCTCTAACATTGAAACTGCTCTGCATTCCTCAGCACAGCTGGATAGCAGAGAGATTATAAATATGTTTAAAACATCAACACAATCCTTGCAGTTAGCTAACATTACCAACTTCAAGGGTGACTACAATTTTAGCAGCATAATTACCCCCAGAGTTGGTGGTAGATCTGCTATTGAAGACCTTCTTTTTAATAAAGTTGTTACTAGTGGCCTTGGCACTGTTGATCAGGACTACAAATCCTGTTCTAGGGACATGGCCATCGCCGACTTAGTTTGTTCCCAGTATTACAATGGCATCATGGTTCTACCTGGTGTTGTTGATGCTGAGAAAATGGCAATGTATACTGGCTCTCTTACTGGAGCTATGGTATTTGGGGGACTGACTGCTGCAGCGGCAATACCATTCGCTACTGCAGTACAAGCCCGCCTTAATTATGTCGCACTGCAAACAAATGTACTACAAGAAAACCAGAAAATTCTTGCAGAATCATTTAACCAAGCAGTTGGCAATATATCACTTGCACTATCTTCTGTTAATGATGCCATCCAGCAAACTTCTGAGGCTCTTAACACTGTAGCTATTGCTATTAAAAAGATTCAAACAGTTGTTAACCAGCAGGGTGAGGCATTATCACACCTGACTGCACAGCTGTCAAACAATTTTCAAGCAATTTCGACTTCTATTCAAGACATTTACAACCGTCTTGAGGAAGTAGAGGCTAACCAGCAAGTTGACCGTCTCATCACAGGACGGTTGGCTGCACTTAATGTATATGTTACTCAGCTACTCAATCAGATGTCTCAGATTAGACAATCCCGATTGCTAGCTCAGCAAAAGATTAATGAGTGTGTCAAATCTCAGTCACCCAGATACGGTTTCTGTGGAAATGGCACGCACATCTTCTCACTTACTCAGACTGCACCAAACGGCATATTTTTCATGCATGCAGTACTTGTACCCAACAAATTCACACGTGTCAACGCTTCTGCGGGTATTTGTGTGGATAATACGAGAGGCTACTCATTGCAGCCTCAACTTATACTCTACCAGTTTAATAATTCCTGGAGAGTTACACCTAGAAATATGTATGAACCCAGACTGCCTCGGCAAGCTGATTTCATACAATTAACTGATTGCAGCGTTACTTTTTACAATACTACCGCTGCTAATCTTCCCAATATTATTCCTGACGTTATAGATGTTAATCAAACAGTCAGTGATATTATTGATAATTTACCTACAGCAACACCCCCTCAGTGGGATGTTGGTATCTATAACAACACTATTCTCAACCTCACCGTTGAGATTAATGATCTACAAGAGCGGTCTAAAAACCTCTCACAGATTGCAGATCGTTTACAAAATTATATTGATAATCTTAACAATACTCTGGTTGACCTTGAATGGCTCAACAAAGTCGAAACTTACCTTAAATGGCCGTGGTATGTATGGCTTGCCATAGCCCTGGCTCTTATTGCATTTGTGACAATTCTCCTAACAATCTTTCTTTGTACTGGTTGTTGTGGTGGTTGCTTTGGTTGTTGTGGCGGTTGTTTTGGCCTTTTCTCTAAGAAGAAAAGGTATACCGACGACCAACCAACACCGTCCTTTAAGTTTAAGGAATGGTAG
Protein
MQRALLIMTLLSLARAKFADDLLDLLTFPGAHRFLHKPTRNSSSLYLRANNNFDVGVLPGYPTKNVNLFSPLTNSTLPINGLHRSYQPLMLNCLTKITNHTLSMYLLPSEIQTYSCGGAMVKYQTHDAVRIILDLTAIDHISVEVVGQRGENYVFVCSEQFNYTTALHNSTFFSLNSELYCFTNNTYLGILPPDLTDFTVYRTGQFYANGYLLGTLPITVNYVRLYRGHLAANSAHFALANLTDTLITLTNTTISQITYCDKSVVDAIACQRSSHEVEDGFYSDPKSAVRARQRTIVTLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTTSVHATDTSSVITGVCTDYTIYGVSGTGIIKPSDLLLHNGIAFTSPTGELYAFKNITTGKTLQVLPCETPSQLIVINNTVVGAITSSNSTENNRFTTTIVTPTFFYSTNATTFNCTKPVLSYGPISVCSDGAIVGTSTLQNTRPSIVSLYDGEIEIPSAFSLSVQTEYLQVQAEQVIVDCPQYVCNGNSRCLQLLAQYTSACSNIETALHSSAQLDSREIINMFKTSTQSLQLANITNFKGDYNFSSIITPRVGGRSAIEDLLFNKVVTSGLGTVDQDYKSCSRDMAIADLVCSQYYNGIMVLPGVVDAEKMAMYTGSLTGAMVFGGLTAAAAIPFATAVQARLNYVALQTNVLQENQKILAESFNQAVGNISLALSSVNDAIQQTSEALNTVAIAIKKIQTVVNQQGEALSHLTAQLSNNFQAISTSIQDIYNRLEEVEANQQVDRLITGRLAALNVYVTQLLNQMSQIRQSRLLAQQKINECVKSQSPRYGFCGNGTHIFSLTQTAPNGIFFMHAVLVPNKFTRVNASAGICVDNTRGYSLQPQLILYQFNNSWRVTPRNMYEPRLPRQADFIQLTDCSVTFYNTTAANLPNIIPDVIDVNQTVSDIIDNLPTATPPQWDVGIYNNTILNLTVEINDLQERSKNLSQIADRLQNYIDNLNNTLVDLEWLNKVETYLKWPWYVWLAIALALIAFVTILLTIFLCTGCCGGCFGCCGGCFGLFSKKKRYTDDQPTPSFKFKEW

Summary

Uniprot
A0A220W0L3  
EMBL
KY293677    ASK86334.1   
Pfam
PF01601   Corona_S2
PF01600   Corona_S1
Interpro
IPR002551   Corona_S1
IPR002552   Corona_S2
ProteinModelPortal
A0A220W0L3  
PDB
6B7N     E-value=0.0     Score=2092     Identity=96.51%     Cov(Q)=93.97%     Cov(P)=98.46%
3D Structure

Ontologies

GO
GO:0046813  P:receptor-mediated virion attachment to host cell
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0019031  C:viral envelope
 GO:0016021  C:integral component of membrane

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1160
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
48.4256399999999
Exp number, first 60 AAs:
0.00198
Total prob of N-in:
0.00860
outside
1  -  1098
TMhelix
1099  -  1121
inside
1122  -  1160
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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