CoVDB Coronavirus Database (v3)   
Strain
Decapod_KX947267 (Region: China;  Strain: Yellow head virus isolate 20120706, complete genome.;  Date: 6-Jul-12)
Gene
structural glycoprotein
Description
Annotated in NCBI,  structural glycoprotein
Location
KX947267(+):20979-25949
GenBank Accession
AQS27934.1
 

Sequence

CDS
ATGCAATGTTTGCGATCATCCACCATGTCATCCTCCTCCTCTCGCTCCCAGGCATCTTTATCTTTTACTGGGTTGCCGGGCACATTTCTGATTCTCCTCTTATCTACTCTACTCTTTGGATCTGGGGCTCATGGTTTCTCACTACAGTTTGCTACTCCCTCACGTTCTCTGGACGCCGGCGCAACAAGGACAAATTCTACTATTCTATCAACGTGCGACAACACAATCCGCACAGCAAAAGAATCTTGTCATCTAAGCTCGCTTAAAACTCAAGTATCCTGTTATTACGACGAACACATTCACGACATCTCAAGTCCAGGTGAGCACATCATCTACACCATTGGTTTTGCTTATCTGAAAACAGATTACGAATGTAAAGAAGGATATCCACCCGCCAACACCGTCCAGCGATACTTTCTCGCTATCCTCTATCTCAGCATCTGTTCCCTTCTAGCTTACATCTTTGCCAAGCTAACTCCTATTGCTAAATCTTTCATCACTTCTTGTTTCCAAACTGAACACATCATGGAAACAACTGAAACTGAACACGGACAGACCACCGTTGCTCACGACCGTCATCGGCTCACACCAACAAGCTGTCACTCTATTCTTAACTCCACCTTCAACCTCTTAGTCATTGGACTCTTCATCTTCCTCTGTTTCTTCATCACTCCAGCATTCGCTAAAACTAAACCAGCCATCAAATCTCCCCATTTTCTCTTCGAAGCCGGCCAACCCGAGCCTTCCGACTGCGTTCACTGGGCTGCCAATGGTGACTGTTTCTGTAATAACACCAATTGCGATTGGAGTGAGCAAGTTCAAAAGCAATGTCCAATCTCTTGCAACACCTCTTCTTCTTCTTCTCCCACCACTAGTCCTCCAACATCCAAGGATACTGTCAACGCTTCTAACCCTTGCATTGAACAGGATTCCGATGGCTGTTATGACTATCTTTCTGACTATAACCCTTCTAAACTCACTCAGGCTATCAAATACACACGTAAACTAACCACAAAGAAGATTTCACGCAGCATACACACACTCCTCACACAAGAAGAATTCGAGAGCTTATCAATAGATGAAGCCCGCTATTCCGACATCTCAACACTCTATCGTATCACCAACACCTCATCCGTTCCAGGTTGTGTGTACAATCCAGTATCATACTACCTCCACGGTGACGCTGTTGCTGTTACCTGTCCACCCACACCACGCCTCTTAGGTACCACATACAATCACGCATTAGGTACTCAGATCCTCTACAACAACAAGATGGTTAATGTCACAGTGGACCCGAGATGCAAATCACACTCAGAAAACTGCWGGGCTTACTACAACAAAGCAGCAAAAGGCATCTTCATTCAATTTCACCCCATTTATGCACAGCAATATCATAACAGAACTCTCGAAGCTTCAACATTAATCACCCCAATCTACCCTCCCAGAGACAACACCTCCCTTGCAACACCTCTTGGCCCTCGTGTCATGCGCTTTGCTGGCGATTACCAAATCTTCCTTGATCCTGGCTGGCTTGGTAAAACATACCATTCCGGTGACACCTACAACGAAATCYACGCCACAACAAGACATGACTGCGCTTACAACATGATGAATTACGGCAACAAAGACAGAGGTTCTGATCTCGGTGACGACGTACTCCATGAAACAATACCAACACCACATGGCTATGTCGTTAATCCTGTTGTTTGTGGGACCACCTTCACTTACTTCCAAACAGGCACCGCAGTAATTCTTCCCTGGGAACGAGTCAGTTATACCAATATAGAAGACGTTCCAGCTGGTTTCCGTGATCCATATGATTTCAACGTTGAAACTCCAGAGGGCCCTGTAACCATCAGTGTTCTCGAAGAGTATCATGACGCAGATTCCATACAGGAAATGGCACCAAAGCGGTTCTTCATCTATTATCGAATAATGTCAGCTCGCCTCACTAAAACACAAATTGCATATCTCAATCAATCCATTCATCAAACAGGCACTTGGTCTGCTGATCACGAAATGACAAATTGTGTTACTGTCAGACCACAGTTCATCAAAACATCACATCCATATGCATTCGCACTTGAATACACAGATTACCCCATTTCACCTGCTCCACTCATTCTATGCAGCGAATATAACATCAAAATTGACGTTCCCTTAGCAACATCTGGTTCCACCCGCCGTATCTGGGCTGCTGAATATAGACATCTCCCCCACTTCCTAACAAAGCGTGGTTTTTATCCCCTCCAAGCTGACGACGGTGGCGCTATCGATTATCTCATAGTCGAATATAACGCACACGCCTCACGCTATTCACATCAAGCAACCTACCACCAATTTGGTCATCCCACCGCTAAATCTCAAACAAGCCCAGGCGTCTGTCCAACACCTCGTTCACTCCGCTATCAAGGCCTTTGTTACGAAGTTGACTGGTCAGTTCGCTCTCCAAAACCACCAATCAGTGGATATCCCGACATCGGAACTCACACATCTGGTTACATCTTTAAAAATTATGACTTCTATAGATTCAAACCTAAATTTGGCAACGGTCTATATCTAGGTAAAGTTTCCGCTGCTGCTTCCATTGGCACATATTCTAAGTGCGGCAAGGCTCACACAATCAGTCCACTCCACGACCATGGAATTGTGACTGACATGGGTACGCCGGTCTATGATAGTGCTTGTGGTTCCGCAGCTTATACAATACCAGTAGTCAAATACAACGGTCCCTATTCCCTCGGTGTTCCAGATATCAATTGTAATGTTAATAATGCAACACTCACATGTGACACTAACGGTACATTTAGATTTTCAGTTTGCTCCCATAAAATCCCTTATGACGGTCCCCACTCTGTCACATGTACAACATCCATTGACAATAAAATCCATCTAATCAAGCAGCCCGGTTATTCCTACTACATCGCAGGCGATCCAGGTGCACTTCATCTCTCTCATAACAAGCACACTCCATACAACACAGTCCTGAAAGAACAAATGAACTTGCTCCACTTTTCCTACATCTATCAAGCCATAGCAATGTTATTCGGAAGCATTGGCTACATCCTCTTCGGAATCTACATCTTCCTCTTTATCATCACCACCCTATGGGCCAATCTAAAATACATCTGCTATCGCAAAACAACTTATCTAGGTCACACTGTCCCTGAACGTTTCATGGCTGGCAAGGCTTCTGGATGCAAAATGTGTGGACTTGATACTAAACATCTCAAAACTCACGTCCGCCATCACAAGATCTACATCCACAGCCCAATGCTCGGCCGAACTTTCTTCCTCTGGTCTCCTATCTACGCCATTCTCCTCCTATCTTTAATATCTCCTGCTTCCGCCCTCGCTTCTGGTCAAGCACGCGTTCGAGGTTCTCCCGGCACTTTCAAATCGACACCTGAGATTAAATCAACATCTTGTTCTGGCAATCAGTGTCTCCTCGACCTCGAGTACACTGGTGTCATCCCAATCTATGACGGTGCTCAATTTTCAGTTGATCTCAACATTGAAGGATATCTGCCAGTCACAACAAGCTACATTGTTCGTGATCCCACATATACCTCATCTTGTGCTTATCTCTACACCTCTCTGCCTCCTAAGCTTTGCGACGCTCGCATTAACTGGTCATGCCTCCATACTGGTTCCTGTCAAAATAGCTCCGACTATCTCTTCAAGCCACTAGGCACTCACACCTCCAACGATTACGTGGTTGCCAATCCATCCAACCCTCTTCAATGCGGCTTGTGTCCCCATTCAGCTGATTGTGATACCAAATTCGCAGCTCTCAACCACGGATGCGCCACCGTCAACGATGGCCATTCCGCAGGAGCAGTCTGGATCTCAGGTGACATCGACAACGACATGGTCTCAGTTTTCGAATGCTCAATCAACAACATAGCATTCCAGATTTGTGACCTTCAATCCAACGCATGCACCTCTATCACCACAGATTACAGAAATTACACCGCAGACTTCGAAACAATCAGCTTCAACATCGCCCACCCTCAAGTAGCTAAAACAACATTCAAAGTTGGTGCCCTCTTCACGCAAGGAACAACCTATCCGCAACACCTGTTCTATGATGTGCCCGGTAAATATGCTGCTCCAGCTGGTTCTTTCTTTAGTTACCAAGCTGAAACAGTCCCCACCGGTGCCTTCTGCAACAAAAACGCATGGATGTCTCCTGGCATGGCATCAGCAGATATTAAATACATCGGCTATCCATCCCTAGATTACAAATTAAATTTCGCCACAATCCAACAAGCCATTCGTAGTTATGACCCCCTCGGAGCTATAATTCAATGCAATTACGATCAAGCATACATTTCCACCATCACAGCTCGTCAGCAGCGATCACTCAAACTAAATGGAGTTACTTACAGCGATGAGGTTGACGCTCTTTCGTATGGCCTTCTCCTTAATCCGCATCACTGCGATTTTGGAGCTGTCAACATACACTTTGCGTACGCCGCTACCGCTCACGTCTCTATCATAGAAGGTGACCCTGACCAATTGTCCTTCGACTGTAAGGGCTGTCTTTTCACAAATAATCAAATGCAATGTTCCATCAGAGGTATCGACTCTCATTCCTATCAAATCACTGACTCTCTAAACACTTTTGGCGCTTCCACTTGCTCTCACACTAAAGATTCTCACATATGTAATTTCACAGCCTCATCGCCCGAGTTCGATCTCAGAGTTAACGGTAAACCAATCACCATAACTGCAGTTGTTACAGAATGTGATGTCGGGGCTATCTCTGACACCATTGTGGGCGCTGCAGGAAATGATGCATTCGGAACCTTCACCTCTTTCGCATTCGGCGGTAAGACATGGGATTATATCCTCAAGTATATTCTTTATGGCCTCGGATCACTCATACTCCTCTTCTCTCTAATCTTCCTGCTTAAGCTGCTCTCCCACTTATGCACCACACTGAGAACGAAAACTAAAAAGTCCTGA
Protein
MQCLRSSTMSSSSSRSQASLSFTGLPGTFLILLLSTLLFGSGAHGFSLQFATPSRSLDAGATRTNSTILSTCDNTIRTAKESCHLSSLKTQVSCYYDEHIHDISSPGEHIIYTIGFAYLKTDYECKEGYPPANTVQRYFLAILYLSICSLLAYIFAKLTPIAKSFITSCFQTEHIMETTETEHGQTTVAHDRHRLTPTSCHSILNSTFNLLVIGLFIFLCFFITPAFAKTKPAIKSPHFLFEAGQPEPSDCVHWAANGDCFCNNTNCDWSEQVQKQCPISCNTSSSSSPTTSPPTSKDTVNASNPCIEQDSDGCYDYLSDYNPSKLTQAIKYTRKLTTKKISRSIHTLLTQEEFESLSIDEARYSDISTLYRITNTSSVPGCVYNPVSYYLHGDAVAVTCPPTPRLLGTTYNHALGTQILYNNKMVNVTVDPRCKSHSENCXAYYNKAAKGIFIQFHPIYAQQYHNRTLEASTLITPIYPPRDNTSLATPLGPRVMRFAGDYQIFLDPGWLGKTYHSGDTYNEIXATTRHDCAYNMMNYGNKDRGSDLGDDVLHETIPTPHGYVVNPVVCGTTFTYFQTGTAVILPWERVSYTNIEDVPAGFRDPYDFNVETPEGPVTISVLEEYHDADSIQEMAPKRFFIYYRIMSARLTKTQIAYLNQSIHQTGTWSADHEMTNCVTVRPQFIKTSHPYAFALEYTDYPISPAPLILCSEYNIKIDVPLATSGSTRRIWAAEYRHLPHFLTKRGFYPLQADDGGAIDYLIVEYNAHASRYSHQATYHQFGHPTAKSQTSPGVCPTPRSLRYQGLCYEVDWSVRSPKPPISGYPDIGTHTSGYIFKNYDFYRFKPKFGNGLYLGKVSAAASIGTYSKCGKAHTISPLHDHGIVTDMGTPVYDSACGSAAYTIPVVKYNGPYSLGVPDINCNVNNATLTCDTNGTFRFSVCSHKIPYDGPHSVTCTTSIDNKIHLIKQPGYSYYIAGDPGALHLSHNKHTPYNTVLKEQMNLLHFSYIYQAIAMLFGSIGYILFGIYIFLFIITTLWANLKYICYRKTTYLGHTVPERFMAGKASGCKMCGLDTKHLKTHVRHHKIYIHSPMLGRTFFLWSPIYAILLLSLISPASALASGQARVRGSPGTFKSTPEIKSTSCSGNQCLLDLEYTGVIPIYDGAQFSVDLNIEGYLPVTTSYIVRDPTYTSSCAYLYTSLPPKLCDARINWSCLHTGSCQNSSDYLFKPLGTHTSNDYVVANPSNPLQCGLCPHSADCDTKFAALNHGCATVNDGHSAGAVWISGDIDNDMVSVFECSINNIAFQICDLQSNACTSITTDYRNYTADFETISFNIAHPQVAKTTFKVGALFTQGTTYPQHLFYDVPGKYAAPAGSFFSYQAETVPTGAFCNKNAWMSPGMASADIKYIGYPSLDYKLNFATIQQAIRSYDPLGAIIQCNYDQAYISTITARQQRSLKLNGVTYSDEVDALSYGLLLNPHHCDFGAVNIHFAYAATAHVSIIEGDPDQLSFDCKGCLFTNNQMQCSIRGIDSHSYQITDSLNTFGASTCSHTKDSHICNFTASSPEFDLRVNGKPITITAVVTECDVGAISDTIVGAAGNDAFGTFTSFAFGGKTWDYILKYILYGLGSLILLFSLIFLLKLLSHLCTTLRTKTKKS

Summary

Uniprot
A0A1S6GXF7   F2Q6W9   F2Q6X3   B3U1H7   C6GFB0   A1Z0M2   + More
B6SCR1   A0A0U2KCJ7   Q8JNK9   B6SCR3   B9UYP8  
Pubmed
28044194    12180709    12655087    16213055    18582978    19409902    + More
20554800    18768192    10399042    10811931    11907343    19049843   
EMBL
KX947267    AQS27934.1    FJ848674    KT316278    ACS44774.1    ALS03976.1    + More
FJ848675    ACS44778.1    EU487200    ACA21301.1    FJ848673    ACS44769.1    EF156405    KT316282    ABM30183.1    ALS03982.1    EU785042    ACI49541.1    KT316279    ALS03978.1    AF227196    AAK84670.1    EU785043    ACI49543.1    FJ194949    ACM24270.1   
Proteomes
UP000281268    UP000000402   
ProteinModelPortal
A0A1S6GXF7   F2Q6W9   F2Q6X3   B3U1H7   C6GFB0   A1Z0M2   + More
B6SCR1   A0A0U2KCJ7   Q8JNK9   B6SCR3   B9UYP8  

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1656
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
136.578400000001
Exp number, first 60 AAs:
22.34935
Total prob of N-in:
0.99805
POSSIBLE N-term signal
sequence
inside
1  -  19
TMhelix
20  -  42
outside
43  -  133
TMhelix
134  -  156
inside
157  -  205
TMhelix
206  -  228
outside
229  -  1017
TMhelix
1018  -  1040
inside
1041  -  1096
TMhelix
1097  -  1119
outside
1120  -  1620
TMhelix
1621  -  1643
inside
1644  -  1656
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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