Strain
Fish_KY130432
(Region: Canada: British Columbia; Strain: Atlantic salmon bafinivirus isolate VT01292015-09, complete genome.; Date: 15-Jan)
Gene
replicase polyprotein pp1a
Description
Annotated in NCBI,
replicase polyprotein pp1a
Location
GenBank Accession
Sequence
CDS
ATGCCCAACATGCGAATCCGCAAGATTGCTCCTAAAGCCGCTGTTAAACCAACCCATAGCGGCCCAAGAGTGGTCTCCAATCCCGCAAGCTGCCACATTTATATCGGACCCCAACTGCGTGCTCACAATTACCCGAGCGTGCTAAAGGGCTCCTTTAAGGCTGCCAGCGAGGAGACCATAACAGCTATCAACCTAATTGCCACCGTCCGCAAGGATGCTGGTATTTCAGGTCAATATGCTGGGAAGATGGGTTATGACCCCGAGATGGGACTTTTTGTCTCCGTTGAAGGTGTTCGTGCCCTCCAAGCTTCCAAACTCCAAACTGCCCTTAAGGCAACTAAAAAGGGTACTAGACCCTTTGGCCTCTTTAGGCCTAGACAGAGTGTGACTAACACCCACGCTCAAAATCTGCTAGCCCTTTACCGTGCTAGCTCCACCGGCCCCTGGACCAAACACCTACCATCCCAAGGTCCCAGAGGTGACTGCCTCGCAGAATTCATGCAGGAGTACACTACCACAATTCCACCATTTGATAGTGTCCTCACTGAAAACGGTTGGCAATACGCTGTCACGATTGACGGTGTGACTAAATCTCGCCTCCCGTACACCGAAATTCGCCGCGGTGGTTATGAATTTAAAACAACTAATTACCACATCGGTGCAATCCAGGTTACTGCCAACCACATTGGCAAAGTAAACCCTGGAGATACTAAATTGGACTGTCAATACTTCACGTTGACACGTAACCAAAAACCCCAAAACTTCACTGCTGAGCAACTCGAGGGAAACATCCATAACATCATCTTCGACCTCAGTCATGAAACTGGCAAACCCAAACTCTATGGAATGGAACAAACACGACAATGGGCTGGGACAACACCAAAACCACCTAAGAAAAAGCTTAGACTTGTAGCTATGACATCAACTCTCAGTGCCACTCCATCAACCACACACCCAGCTCCCCTAACAACCACACGCGCACCACTCAGAACACACATCTCAATTGGCCCGCACAACTGCACCATCATTGATATCAACAAAGCTCAATTTGCTTTCGACAACCACACCTCCCAACTCCCTAACTCTTGTGTTCACCGTGCCAACAAAGCTGTCTGCGCCGGTTTGAATGCTGATCTTCTTTCTACCCACTTTAACCACCTCTCTAAAGTAGAAACATCTAAAGGAACTTACCAATGGGTACATTTTAACCCCAAAACTACGGCTCCTGCTATCCAATTCTACGTCTTGCAATTTCAGAACCACGTCTACCTACGTCTTCTCCCCATGCCTATGAACCTTTCTTTCCGCACCATCTGTGACATTGAAACCGCCCACGGTCAACCAAACCCAACTTACACAAGCCCAGACTGGCGCGTGTATTACCTCGCAAAGTACGATCCCACCAAAGTACTCAGAGTTCAAGTTGTTGATTGGGCAGGTTCAGATACCATCACTGAAGATCATGTCACCCTCTTCCCACGCCGACACATTATGACTAAAGTTTTGAAAAACGACCAAACTAAAGTTAACTACATCGACCCAACTAAAGATGCAGCAACAACACCCTTCACAATTGAAACAGTTGAAGGAGGCAAAGTTGAAGTACTCTCCGCCAACGTCATCCGCCAAATTAACATTGAAACTGGTCGCGGCAAGAAACGTAAAACAGCTAAATTAGATGTAAAAATTTCAATTAGAGTTAAAGCTACTAAAACCCGCACAACAATCCACGTCTTCATAACCCAAGCAAAAGATGAAAGCAAAATCGTCACTCCAACCTCAGAAATGCAGGGAGTAGTCGACGTTTTAATTTCCAGAGCATGTGTCCTCTCACAACACGCAGGACCTGACATGACTTATGAACTGCACACACCTGACGGTTCTTGCACTAACCCCCTCGTTCAATTCTTTGAAGAAGAAGGCGAGGTTCCTGAAGATGTTTACGATCTCTTCCCATCTGTAGAACGTAACGCTGAAGGCTTAGTTATGTGCATGCCAGAAGGTTTTGCCCTCATCTCTGGTTGCATTCCTCATCCACTTGCTTACTATGCTGACAAGTACGGTCAAACACTCGTACCTGAATTCAAAGTGACAAGAACTCACGTTGAACGCGGCCCCATTCCACCATCACGGTCCATTTACTACACATTCATCCCAATTAATGTAGACTCCATCCCACCCTTCGGACACACCTACAAATCCCTCGCCAAACTTAACACATTTAACCTGGGCTGGGAAGATCAAGACATGTTAGATAACGCTGACACCCTCCTTCCATGTCTCTTAGAAAATGAAAACATGAAACTTTACCTAACATGGAAAATCATCGCCCGTGACTTCTCAGATAACACCACTGAAACAGCCCTTACCACCTACACTGATTTTACAACTAGTGATTTCACCCCAGCTAACCAAACAGGATCCAGCTCTCAATCCCTTAGCTCTCCACCTCTTTCCCAACTCTCTTCCCACAAATCTCTTGCTAACCTCTCAGAAATTGGCTCAATAGATAACATCCCGGAAAACACCCCTGAAACAATCCAAGAAGAAGAAGATATCGAAGAGGAAGTAACATCTCCTGTTCAACCCACACCCAACACACTCCAAGAACAAGCTACTCTCAACGAATCCATTCAATCACTCGTTGAATCAGTTGATTCTGATGTCCCCTACACCTGGGAACAACGTGTTGAAGAAAGTGAGGTTGCAACTATTGATTTACAAGCTGTAGAATTAGATCAAACACCTGCTCCTACAACAATTCAAGGTCACAATTTCTCCCTCTTACTCACCGGTAACACAATTGGCTGCCACAATAGTATCATCAAACTCCTCGGTGAAACTACCCAAACGCTTACAGAAACATCAGATCAAATAAGCCACTTCACCCTTGCTTTCTGCCCTATCGTTTCTCGCGCCGGAACTGACATCCAAGCTGCCCAAGATAAAATTGATACTCTTTCCAAAATTAAACCTGCAATTATCATCGTACTCCACCACACTTTCGATGTAAACATGGTTACTCCTGAATCTTCCACAGCAATCACACGCTCTAACACACACGCTGTTGACATGCTGTTCCATGAAGATCAAGGATTACTTCAATGCCAGAAGAATTATAACGCTCTGGCTAAAGTTGCAGATTTAATCCACCTTGAAACTCCACCCAAAACATCATGGCTCGGATATTTCCAATCACTAATTACATGGCCAACTAAGGTCAAAACACCCACTACTCCCACTCCTACCACTCTCTCAATAGAAGCAGTGCAAGAATGGGTCAACGCAACATCACCTGACCTTGCTACAGTAGACTGGAACAGTGCAATAACTGAACAGGAAACCACAGTAACTTCACTAATAGAAGAAATCTCCCTACGCCCCAACACCAACAACACCGGCTACAACTTGTTTAAACCTAACCAACGTAACAACAACAGCCCATCAGACTACCTATCACGAACAACATCAGCAACCAAACACTGCTTAATCAACGGTCTTACTTCAGGTTCCACCATCCTTGAAGTCGGATGCGGGTATGGTAAAGAATTTCACAAATACAAGAACTCTAACATCAAAGTTGTTGCTTTGGAACCTCACCATGAACGCTACACCGAAGCCGCGAAGAAACTACCATCAAATTCTACCATTTACAACAAGACCCTACAAGAATACAACCAAATTGTCATTAAAGAACAAATTGACGCCCTAGTTTCCTTTAACGCCATTCATTACAGTACAGTTACTGAAGCTCTTAAAGCATGTAACCTTGCCAAAGATCAAGTTGTCATTTTAACACCAAATCATGATAAACTTAAAGCTCTTCACGATAGTAACACAACCATCACAAATTACAAAATTGAACTTGCTAATAATAAATTTACATTTACAATCGGCCAAAACACCTACAGCGAAAACTACTTCTCACTTCAGGATTTCATGATTGGAATGCATGCCAGCAACTTCATGCTTTCTTCCCGCTCTTGTACTCTGCTTGAACATGTTAACACCTTCAATGCCCACCTCTTAATTGACGCCACAACAGAAACAACTACCCTGCTAGACGCCTATGAAGTACTCGTCTTCATAAAATTTAGACCACTGCTCCTCACCTACTCCAACACCGCTCTTGCAACTAACAACTCAAGAACAATCCGCAGTGCACTCTCACGTCTTATTAACTTCCGTGTCGCACCATCTAAAACAACATCACAGGTACATGTTCACATCCTCACCCGCAACGACCACGTAACCACAGAACAAGAACATCTAGACTTAGCAAATATTGAAATTGCCCACATGAACCCAAAACCAGCAATTATCTTTGTAACTTCCTCCCGATCCAGACATAATTACACCACCCCAACTGTCTTCTTCGACTTTGCTACACTATCAGCCCCCACCCTCCCAGAACAGCTTAAACCACTCACTGATCTAGCCCTCGCAATCCAACACACTGCTACCAAAACTCCAACAACAGTACTTACAACTGCCCCAGAGGACCCAAAAACCCTCCCAACAGCACCCACCTCCTTTACAAAACCTTCCCGTAAACGCTACCACTGCTTCCACGATTTAACCACCCTACCAGTTAACAAAAATTTCATCTTAGTTAACGCAGGTAACCCCCACTTAAAATCAGGTGGTGGCATAACTGGAGCCGTCTATAATCGCTACGGCCAAGGATTCATGCAAACTAACAACAGCATGCATGCTACACAATTACCTCTTGAAGTTGGTGACGTCTTGGAATACCCCTCTGACCGTAACAACCTGATTAACGTGACAGCCCCCTGCATCAACATCAACCACGCAGATTACAAAGGCCCACAACCAGCCCACGCACTACTAGCAACATACAACGCAATTATCAACTACGTTGAACGTAAGTACGATAATGGTGACGAGAAACACGTCTTCATTCCTCTACTTGGTGCTGGATACTACGGTNGGTCACAGACTCAAAGCCTTCAAGCTTTTCTATCCGCGACTGATAATAGTTTCCGCAACACATATGTTCTACTCCTACACCCATCATCTGTAGATGTTGAAACAGCTGAAGTATTTGCCAAAATGCTCGCCACTACTAACCCACACTACTACCATGTTGAGGGCATAGCTAAAGTTAATGCCAACTCTTGCGTTCTGCGTGCCCACATTGACCTTGCCCGCAAAACATCTTACCCTCAACCTAGCTTAGGATTAATCGGCGCTTACTGGATGTACACCTGCCCCACCCTGGCCGCCCCATTGATACAAGCTGGCATGCACGGTCCCAACACCTGGACTCCTGGCAGCTTTATTGATACTAGTATTGCTGAAATGACTGCTCGCGCTTACAAAATAAATCTTGTTTGCGACGGTTGCTTCACTGATATCATCAATTTCAATCCCGACCAAGGTTTAATCTGCAATACCTGCAAGACACCTGTCACTCTCCGAACAAACTATTATCGCCCACGCCTCCCACACATGATTAAAAATAGTCACGGACAACCCATCCCTAACATTACTCTAGATGGAGTTTACCACATGGCTACGCACCAATTGTTCCTAAATTCGGTACTCTTTAAAGATTCACATGCTTTCACAATTAACAACTTAAGTGAATGTGATCTCCCAACAACCACAGCAGTAGCAACCTACTTCTACAAACCTTCAGATGCCTTAAACTTCTTCCTGAACTTTAACTCTGCTCTTTCTGCTAAAGTAACCTACACACCAGAACAGATAACACAAGCCCAAACCGCCCCTCAACTGACGACTGACGATGACTACTCAGACTTGGACATTGACACAATCAAACCTACACCTACCACTCTACCACGCGCCCCAACACCGCTTTCAATTAGTGATAGTAGCGAAGATATCTCACTCTCCGATGACACCCGCACCGTAGCATCCCATCACGCTTCACAAATGTCCATATCAGCTGACACAGCTAGTGATAGATATAGCTCTACAAACTCTCTAGCTATCTCAGAAGATATAACATTTCAAACAGGTGACGGTGAAACAACAACTTCACTTCTGACTGATTCGGTCCTATACTACTCTGTCGTTACAGTTTTACAACTACGTAAAGCAGAGGATTGTGTAGAACCTGATGTAGAAACTATTAACCTAAGACCCAACTCATCGCTTCACACCCTGACACATGACACAAACGCCATCGACCAACTTTACATCCAAGTGGCTTCTGATGCTTCAAATCACACTGTAATTAATAACACCACACTTGAATCTATTTCGAAAACAATGTGTGTGAAAAACTCCTTGTACACCCTTCTTACCAACTCAAAGTGTATAAGTCACCACATCATAGTTACAGGATATGACCAACATGCTAATGAAACACATACTATCAAAAGTGTCACGCGCCAAGCCATGCTCGCCATCCAACCCCTTTCACAACTTACGTCCACACACGTTTACAGCACACTTGAAGAAGATATTTCCACCATCTTCCAAACTGTCGTCCTAGAACACGTCAACCACACCAAGCTTTTCACTTACAACACCAAGCTTCACTACGCAACCACAGTACCAACAAACCTACTCATCGATGGAACAATCGAAGATGTTCAAGGTAAGCTGCGCGAAGTTGATCTTGGCATTGTTGTTCCTTATCATTGTGAAGTTGACGAGCAAATTGAATACACAAATGCAATTGGCGACGTTCTCTACCAAAACACAAATCACCACTCACCACTAGTGACCTTTGTTTCTATCGACAAATCTTTTACTAAACGTATTTTTAATTCTTTAAAGTTTCAAACTCTACAGAACCTATGGCTCTACCTTATCACCCTACAAGTATTTTTCACAGTTAAAGGAATTGGCTTCGGCTTCAGATCAACGGAACCAAACACACAACTCATGAACGGTCTCTGGATACAATACGGCATCTTCTACTTCCAAGTACACCTCCAAACCCTCATAACCCACCCAGTGAAAAATGGCTACAGACTACTTTCATTACCAATCATGCTATACAACAAAGGCAAAAGATTCACCGAACGTTCAGTCCAAACAATGACGGGAGAAATCGTTAACACACGAAAACCCTCGTTATCAAACGCTGTACAAAAATACGGCATTAACACTCGACTTGAATACGTTGATATCTTCGATCTCCTCCACTATACACCTGCATACATCACATTTAACATCGCCTTGTTCTATCTCTTTGCTGGTAGTGGCTATATAACATTCTTAGCCTACATCATCCAATTCTTCACCGCTCGCGATATCTACAGACTCTCTAAACACCTCTACACAGTCTCAAAACTCACCACCTTCCTTGCGAAATTTAAAACAGCAACCACCCGTCACGTCTTGTACGCTACCAACCAAGTAAACAACCGTTCCCTTCATCTCACCCTCGGATCCACAACAATTGACTTACTCAGCTTTACAAGCAAAGCAGCTTTCCTTGCCCTGTGTTCCTCCTTCATCTCATGGCATTTCGGATTAGCTCTCGCCGGTGGTCACTCTGGTGAAGACTACTCTCAACCACCCTACCACGCAGTATTTCAACATGCACTCCGCACTTTCGGACTTATTCCTCCTAAAGAACATTACTACAGCTACCCATCCCTAGCTTCAGCCTGCGCAGACTCATCAGCCCCTCTCTGCTTCCTCGGAACACCATTTAACTTTCACTTCCCATCATCCTACACACAAGCAGCATCCATGACTACAGAACACGTAGTACCATTCTGGATCCAACTAATCATCCTAGCCCCACCATCGCTCTTCTTAGTTGTCATCCCGTGGCTGATCACAATGTTCATCTCACCAGTATTAACATTTAACCAACTTTTGCTCCCTGCACTCGCCGTACATTTCTTAGCTATCTATGTAATCTACCTTTACTATTTCAAAAAATCATGCTGCCATTCTCACACATGCCTTAAACACGCTAAATTAGACCGCCCCATCCAAATTAAAGGCCTTTTCGATTTATCCATGTACTTCAATCACAATAAACTTTGCCCCCGCCACAACTTCTACTGTAATAATGCTGACGAACCTGGCCACACACTTGGACCCGTCCTAGCAGCTCACATCACTGAATTTTACCATCTTAAACCTGGCACTATTAAGCCCGATGTCGCCCTAGTACACACAGAACACCACGCTTCTCTGAGTCGCAAAGAATTGAAGAAACACGACGACCCAACCGATTGTGTCTGGACTGCCCCACAAGGCGCTGCTGATACTCTCGTTTACGAAGCCTACTCCCATTTGAAAGGAGTCCAAATTCGCATTGATGCCAACACCGATACAACAACTCGTAGCATGCCTATTCCCATGGGCGCCAAAACAACATCTTCTCCAGCTACAGGTGTCATCAACACAAAAGTTCTCGGCCATCTTAAAAGACATTGTAAGAAACCAGCTCTCCAATCTTACCTCTCAGGATACGTCGGTGCCCCCAACGCTAAAACTACTATCATGCCCATTACGTTCTTTAAACACCTGCCTGAAGGACTCAAGAAATACGCCATCAAAAACATCACCTTCTCAACTAACATGCTAACTGACAACTCTAACTCAGGTTTCATTCCAGAAGGCATCCACAACCCAAACAACCTCCCAACCAAGACTTTCCTGGTCAAATCTATCGATCAAACAATTTTCGACCAACTCCACCCAGAAACACAAGCTATGCTAAAAGACGAATACCACATTAAACTTCATGATATAACATCTCAATTTCATGAAGTTATTGCTTCAGTGATGTCCTACGAAAGTTTCATCTTCGCACTCATCATTGTCTTATCCGTCTTCCTTGGTTTTATCTCCTACAGCTCTACTATAACCTCCACCACATCCCTACATGCCGGCTTGAACCCTACCATGCGCGGATCCACTACAGGTAAACCATTCATCCACCCAGTTACTTACCCCAACTCCATCCTAATCCCTCTGACATCTTCCCAATACAATGTATTCAGATTGCAAAATGGAACTCTCTACTTTACTTCTCAAATAACTGCCCCAACCTGTACCGTTAAACTACCAAACCCCTACATTGGCTTAACCACAGAAAAATTTTATGAATGCTCATCTGCCCTCCTCCACATGCCCTTCATGGTTCATCTTGGCGGTGTGAAAATCGCTTACCTTAGAGCTGGTGTTGCCTATAACATGCCAACATACTCAGAAACACCACAAACTAGTAAACTCTGTGTTCTCACTGCACTCTCAAAGACTAAATGCTTTAACATCCTACCAGGTGGTTTCCACACTCCAGTACTAGCCATCCTCGTCTCAACCTGTGCACTTCTGGCAACGGTCCTCTTCTACCTCTACCTACTCCAGATCTTCAAATTCTACACTAACTCAGTCTTGATGGTGGTTGCCATTCAAATTGCAACTATCTTCCTCTTCATGCTATCCCCAGCTCTTGCTCTAACACTTCAACTGGTCTGTCTCATGTACCTTTACCATAACTGGATGGTCGCCATGATTAACATCGCAAACCTCGCCGTTCTAGCCCACACAACATTTGGCATGGTACTCATCTTCATCTACGCGCTCTACAGACTTTACAAAGTCTACCAAGTTACATCAACCGCTGCAGTTACAATTAACGCAACTGGTGAAATGCGCTTCCACGGAACTCTTGATGAAGTTGCTCTCTGCACCTTTCCAATTAGCTCTGCAAGTGTTTACCAAATCATGTCTGACCTCAGCTTAGATTACATTAAACTGGCCAGCTACAAAACATCTTATAACCGTGCTACTCGCAACCTGGTTAACATGATGCAAAGATACATTCTCGATACCTCCATCCCAGCTATACTTTATGACGGCTCAGTAACAACTGGCATCATGCAACAATCCCTAGTTAGACTTAAATCCCTAGTTACAACAGTTTACAAGGATAACTACTCCAACATCTGCAAAATTTCATCAACAACCCACTCACGATCAACATTCTGCGTCGGAACTTTCCTTAACCCAACCACTGTTATCACTTGCTCCCACGGAATCTTAGCAAACTCTACTATTACTGTCTCCCACAAGTCAACTATTTATGAAGCAACAATTGAATCACAACGCAATGATATCACAATTCTTAAACTCACAACACCAAACTCCGCAATCACTCACACCATCGAGTGCCATTCACCAAATGACGCTGATCTCGAAAATATGCAAATTAACTACACCCAATTTGTTACTTTCGCTGATAAAGATCACTCAGATGCCATAGCCATGAACAACACAACCTATTTACCATCTGGTCACTTCTTTGCTATCGGAACTGAATCTGGCGAATCTGGCAGTCCCTACTTCTTTAACAACAAACTTGTAGGAATTCACTACGGAGTTAACACCTGTGATCAATTTATGCTCGCCTCTAAACCTGATGGCAGTTACTACATCCCAGAGATCCAACACAACATCTCCACACAACCATCTTTTAGCCTTAGTTGCATAGCCCATGGTCGAAAATCGGTAACCGCCAAAAACACCCCCACACTTCACGATGCTATCAACAAAGCCCTTGCTCAAACAACACGCTCAGCTTACACTAACGATTTAACAACAGAACACACACCTGAACAACTCCAGGCTGTCCTTGATTTTCTGACAGACCCTCTGAATAAATCTGGCCCTAAGACACTCCATAACTACATGGCAACATCTATCCAAGTTCAATCCTCCACCACAGCCCAATCCGCCCACATTGACGTCCACAAACCAATTAGACAAGCAGCAACTCTCTACTACCTAATGGTTATCATCTTTGACATCATCGCATTCTTCTTAACCCCCGATTCTGATTTCTCTAATCAACTTGTATCCATGACTGCCTACCTAGCTGCCTGGTTCCTTAATAAAACATGCTTCTACAACACCCATGTCCTTTACACAGTAACCACATGCTTCCAACTCTGCAAATACTTCAACATCGTCTATCTCTTCACAATCATTCAATCCTATAAACCAATTGAAATGTCAATGATGGATAAACAATATGATTTCCTTTGCGCCATCATTGTAGCCCTCTTACTCTCTCCAATCCTGGTCCTCATCTGGAAACGCCTCTGCAACTTCACCTGGCATTATCTTGTCGCTCATCTAGTTGTTGGCTGTGTGCTTTGCATCCACGTCTTCTTCAGCTACAGATCCTTTACATCTTCAACAGGCGGTCTATTAACATTCTCAGAATTCGCCTTTAACTCACCATTAACAGCAGTCATAACAGCTACAGTTGATGAAAGTCCTGTTTCTGTTATTGTCTACCCACTCTTGCAGCATGTCATCAGCGCAACCCTGATCTTAGCAATCGTGCCATCTCCCCTCCTCGCAGCAACAGTCTACTCTTTCTATCTCATTGACCAAGATGTCCTCTGCCTCCTAATCTTTCTCCTGCTTACATCCAAACTGACACCACTCTTCCTCCGCCCACTCACAACATTCGTTTCCTACGATGTTGTCATCCTCTCACCCTCTGCTTACGCTCAATGGCTCATGGCAAAATCTGAAGGTAAAGAATACGGTCTCTTTTTCGCTGTCATTCAATCAGTTTTTGATTTTACATCTCAACACGAAGTTGAATTGACACTTGAAGCACAAGAGATTACACAGCAAGTCCGTGTTGAAGTTCATAACACCGAACCTAAAGATACCAAGGATGACACCTGCTACATCACACCCACTACTATTATTAACCCAACTTTAATTAGAACTGACAATTACTTCTACACCAACACCAAGAAAGTAATCTGCGAAGCTCCCATTGAACTATCAGATAAGGCTAAAGAAATCGTCGCTAAACAACTCGACGCTATTCCACACCCTGATGCAGAAACAACTGATCTAGAAGTTGCCACACTTATTGATTGCACAACTACAACCAAGCAATCAGAAGTTAAAGAAATTGAAGTAGACGATTTAACACATGCCTACCTACTCGCTCTTATCAAAGCAACTTGCATAGAATCTGGCCTCCCCATTCCAGTGATGAACTACATCTCATCCCAGACCCAAATTGACTCAGTGATGATCCATTACTTTGTCAAAGCTGCCAACAAACTACTGCTTAAAGATCAGGAACTGCCTCTTATCACAGCCCAATCTGACACCTCCACCATTCAAGAAACCTTGGAAGCTCTCAAATTAAAGGATACCACCCTAATGAACCCCCAAGAACTTAAAGCTCACCGCAAACAGATTAACATTCTGAAAGCTGAACAAGAACGACAGCTATCCATGGAACGGAAACTCAACGCTTTCCTAGATACAATGCACCAACGTGCTGTGGCTGAAAAGAATAGATCAGAAGTTCACAGCAAAGTGTCAGCTGCTTTACGCATGCACCTTTCTAAGGTTGCAAACGCTGCACATTGCGACATGGAAACAACAGACGGTGTTATCACACTATGCTCCGCTTTCTCTATCCGCTCAGTTTGCATCACTCAAAACACTGCAGACGTCTCTATTTACTACTCACAAGCCACAGATACATACTCGATCATAACTACCACCACAGTTTTCACAGCTTATAACCCTATGAATGCCAACGGACAACCCATCATTCCAACCACTGATCCTTACAACCCTATCATTTCATTCCCGGTTATCTTCTCACTAAAACACCGTGAGGAAAAATCGGAGTTAGAACAACAAGCAAACGTGGGATACTCCGAACGTGCCATAAAAATAACAACAACTGAACACGCCACTGGAACAGTTCTCATGATTGACAACATTACATCTGTCATCCCCGCCACTAAAACCGATGCTCGCTTCACCGTAAACGGTAAAGGCTACAAGATCGTCGACAATGCCGTTGCCCACAAAGCTCGTGCTAACATGTCTACAATTCTTGCTGTCTTGCGCAAATCCACCATCAGCGCACAAGCAGCAGTAGTTAGAATTGGCGGTGCTAGATACCAAACATCTCACCAAGCTATCTCTTTCACCCCCTTTCAAACACCAGGCTATGTTACCTACGCAGGAATATGCGTCTGCCAACGCTGCACACTCAGAGAACAACACGAGTGCCACTACGCAGGTAACTTTGTCCAGATACCCACTAACATCTCGACACAAGGACTTAATAAAATTTATGAATTAACATTTATCGGCCCATGTAAACACAACCAATTTGAATGTACCACATGTCAACCAGATCTAATTACAAAGGCCCCTGGACAAGTACTGGTTTACTTCACAGCCCACGCCCAAACCCACTATAAACAAATAGTTACTCAAATCTGCAAATTTTACCAAGTTAAACAATGCAACTCCCAAAAGCATGCAGATTTCACTATCCATATAATTCCACATGGCCACTCAACTGATACAACTCATCCTAACACCACCGTTCTAGTTGTACGAAAACACCTAGTCGATCCAGATCCTCACCCTCCACACATCGGTATAAGTTCCACCTTAACTGGCGAAGAACTTATTACTCTTGACAGATTACTACAACCTGCTGTCGAGCCTCAAACTAAGTCGTTTTTAAACTTCTGGAGCGGGTGGTAG
Protein
MPNMRIRKIAPKAAVKPTHSGPRVVSNPASCHIYIGPQLRAHNYPSVLKGSFKAASEETITAINLIATVRKDAGISGQYAGKMGYDPEMGLFVSVEGVRALQASKLQTALKATKKGTRPFGLFRPRQSVTNTHAQNLLALYRASSTGPWTKHLPSQGPRGDCLAEFMQEYTTTIPPFDSVLTENGWQYAVTIDGVTKSRLPYTEIRRGGYEFKTTNYHIGAIQVTANHIGKVNPGDTKLDCQYFTLTRNQKPQNFTAEQLEGNIHNIIFDLSHETGKPKLYGMEQTRQWAGTTPKPPKKKLRLVAMTSTLSATPSTTHPAPLTTTRAPLRTHISIGPHNCTIIDINKAQFAFDNHTSQLPNSCVHRANKAVCAGLNADLLSTHFNHLSKVETSKGTYQWVHFNPKTTAPAIQFYVLQFQNHVYLRLLPMPMNLSFRTICDIETAHGQPNPTYTSPDWRVYYLAKYDPTKVLRVQVVDWAGSDTITEDHVTLFPRRHIMTKVLKNDQTKVNYIDPTKDAATTPFTIETVEGGKVEVLSANVIRQINIETGRGKKRKTAKLDVKISIRVKATKTRTTIHVFITQAKDESKIVTPTSEMQGVVDVLISRACVLSQHAGPDMTYELHTPDGSCTNPLVQFFEEEGEVPEDVYDLFPSVERNAEGLVMCMPEGFALISGCIPHPLAYYADKYGQTLVPEFKVTRTHVERGPIPPSRSIYYTFIPINVDSIPPFGHTYKSLAKLNTFNLGWEDQDMLDNADTLLPCLLENENMKLYLTWKIIARDFSDNTTETALTTYTDFTTSDFTPANQTGSSSQSLSSPPLSQLSSHKSLANLSEIGSIDNIPENTPETIQEEEDIEEEVTSPVQPTPNTLQEQATLNESIQSLVESVDSDVPYTWEQRVEESEVATIDLQAVELDQTPAPTTIQGHNFSLLLTGNTIGCHNSIIKLLGETTQTLTETSDQISHFTLAFCPIVSRAGTDIQAAQDKIDTLSKIKPAIIIVLHHTFDVNMVTPESSTAITRSNTHAVDMLFHEDQGLLQCQKNYNALAKVADLIHLETPPKTSWLGYFQSLITWPTKVKTPTTPTPTTLSIEAVQEWVNATSPDLATVDWNSAITEQETTVTSLIEEISLRPNTNNTGYNLFKPNQRNNNSPSDYLSRTTSATKHCLINGLTSGSTILEVGCGYGKEFHKYKNSNIKVVALEPHHERYTEAAKKLPSNSTIYNKTLQEYNQIVIKEQIDALVSFNAIHYSTVTEALKACNLAKDQVVILTPNHDKLKALHDSNTTITNYKIELANNKFTFTIGQNTYSENYFSLQDFMIGMHASNFMLSSRSCTLLEHVNTFNAHLLIDATTETTTLLDAYEVLVFIKFRPLLLTYSNTALATNNSRTIRSALSRLINFRVAPSKTTSQVHVHILTRNDHVTTEQEHLDLANIEIAHMNPKPAIIFVTSSRSRHNYTTPTVFFDFATLSAPTLPEQLKPLTDLALAIQHTATKTPTTVLTTAPEDPKTLPTAPTSFTKPSRKRYHCFHDLTTLPVNKNFILVNAGNPHLKSGGGITGAVYNRYGQGFMQTNNSMHATQLPLEVGDVLEYPSDRNNLINVTAPCININHADYKGPQPAHALLATYNAIINYVERKYDNGDEKHVFIPLLGAGYYGXSQTQSLQAFLSATDNSFRNTYVLLLHPSSVDVETAEVFAKMLATTNPHYYHVEGIAKVNANSCVLRAHIDLARKTSYPQPSLGLIGAYWMYTCPTLAAPLIQAGMHGPNTWTPGSFIDTSIAEMTARAYKINLVCDGCFTDIINFNPDQGLICNTCKTPVTLRTNYYRPRLPHMIKNSHGQPIPNITLDGVYHMATHQLFLNSVLFKDSHAFTINNLSECDLPTTTAVATYFYKPSDALNFFLNFNSALSAKVTYTPEQITQAQTAPQLTTDDDYSDLDIDTIKPTPTTLPRAPTPLSISDSSEDISLSDDTRTVASHHASQMSISADTASDRYSSTNSLAISEDITFQTGDGETTTSLLTDSVLYYSVVTVLQLRKAEDCVEPDVETINLRPNSSLHTLTHDTNAIDQLYIQVASDASNHTVINNTTLESISKTMCVKNSLYTLLTNSKCISHHIIVTGYDQHANETHTIKSVTRQAMLAIQPLSQLTSTHVYSTLEEDISTIFQTVVLEHVNHTKLFTYNTKLHYATTVPTNLLIDGTIEDVQGKLREVDLGIVVPYHCEVDEQIEYTNAIGDVLYQNTNHHSPLVTFVSIDKSFTKRIFNSLKFQTLQNLWLYLITLQVFFTVKGIGFGFRSTEPNTQLMNGLWIQYGIFYFQVHLQTLITHPVKNGYRLLSLPIMLYNKGKRFTERSVQTMTGEIVNTRKPSLSNAVQKYGINTRLEYVDIFDLLHYTPAYITFNIALFYLFAGSGYITFLAYIIQFFTARDIYRLSKHLYTVSKLTTFLAKFKTATTRHVLYATNQVNNRSLHLTLGSTTIDLLSFTSKAAFLALCSSFISWHFGLALAGGHSGEDYSQPPYHAVFQHALRTFGLIPPKEHYYSYPSLASACADSSAPLCFLGTPFNFHFPSSYTQAASMTTEHVVPFWIQLIILAPPSLFLVVIPWLITMFISPVLTFNQLLLPALAVHFLAIYVIYLYYFKKSCCHSHTCLKHAKLDRPIQIKGLFDLSMYFNHNKLCPRHNFYCNNADEPGHTLGPVLAAHITEFYHLKPGTIKPDVALVHTEHHASLSRKELKKHDDPTDCVWTAPQGAADTLVYEAYSHLKGVQIRIDANTDTTTRSMPIPMGAKTTSSPATGVINTKVLGHLKRHCKKPALQSYLSGYVGAPNAKTTIMPITFFKHLPEGLKKYAIKNITFSTNMLTDNSNSGFIPEGIHNPNNLPTKTFLVKSIDQTIFDQLHPETQAMLKDEYHIKLHDITSQFHEVIASVMSYESFIFALIIVLSVFLGFISYSSTITSTTSLHAGLNPTMRGSTTGKPFIHPVTYPNSILIPLTSSQYNVFRLQNGTLYFTSQITAPTCTVKLPNPYIGLTTEKFYECSSALLHMPFMVHLGGVKIAYLRAGVAYNMPTYSETPQTSKLCVLTALSKTKCFNILPGGFHTPVLAILVSTCALLATVLFYLYLLQIFKFYTNSVLMVVAIQIATIFLFMLSPALALTLQLVCLMYLYHNWMVAMINIANLAVLAHTTFGMVLIFIYALYRLYKVYQVTSTAAVTINATGEMRFHGTLDEVALCTFPISSASVYQIMSDLSLDYIKLASYKTSYNRATRNLVNMMQRYILDTSIPAILYDGSVTTGIMQQSLVRLKSLVTTVYKDNYSNICKISSTTHSRSTFCVGTFLNPTTVITCSHGILANSTITVSHKSTIYEATIESQRNDITILKLTTPNSAITHTIECHSPNDADLENMQINYTQFVTFADKDHSDAIAMNNTTYLPSGHFFAIGTESGESGSPYFFNNKLVGIHYGVNTCDQFMLASKPDGSYYIPEIQHNISTQPSFSLSCIAHGRKSVTAKNTPTLHDAINKALAQTTRSAYTNDLTTEHTPEQLQAVLDFLTDPLNKSGPKTLHNYMATSIQVQSSTTAQSAHIDVHKPIRQAATLYYLMVIIFDIIAFFLTPDSDFSNQLVSMTAYLAAWFLNKTCFYNTHVLYTVTTCFQLCKYFNIVYLFTIIQSYKPIEMSMMDKQYDFLCAIIVALLLSPILVLIWKRLCNFTWHYLVAHLVVGCVLCIHVFFSYRSFTSSTGGLLTFSEFAFNSPLTAVITATVDESPVSVIVYPLLQHVISATLILAIVPSPLLAATVYSFYLIDQDVLCLLIFLLLTSKLTPLFLRPLTTFVSYDVVILSPSAYAQWLMAKSEGKEYGLFFAVIQSVFDFTSQHEVELTLEAQEITQQVRVEVHNTEPKDTKDDTCYITPTTIINPTLIRTDNYFYTNTKKVICEAPIELSDKAKEIVAKQLDAIPHPDAETTDLEVATLIDCTTTTKQSEVKEIEVDDLTHAYLLALIKATCIESGLPIPVMNYISSQTQIDSVMIHYFVKAANKLLLKDQELPLITAQSDTSTIQETLEALKLKDTTLMNPQELKAHRKQINILKAEQERQLSMERKLNAFLDTMHQRAVAEKNRSEVHSKVSAALRMHLSKVANAAHCDMETTDGVITLCSAFSIRSVCITQNTADVSIYYSQATDTYSIITTTTVFTAYNPMNANGQPIIPTTDPYNPIISFPVIFSLKHREEKSELEQQANVGYSERAIKITTTEHATGTVLMIDNITSVIPATKTDARFTVNGKGYKIVDNAVAHKARANMSTILAVLRKSTISAQAAVVRIGGARYQTSHQAISFTPFQTPGYVTYAGICVCQRCTLREQHECHYAGNFVQIPTNISTQGLNKIYELTFIGPCKHNQFECTTCQPDLITKAPGQVLVYFTAHAQTHYKQIVTQICKFYQVKQCNSQKHADFTIHIIPHGHSTDTTHPNTTVLVVRKHLVDPDPHPPHIGISSTLTGEELITLDRLLQPAVEPQTKSFLNFWSGW
Summary
Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Similarity
Belongs to the coronaviruses polyprotein 1ab family.
Uniprot
EMBL
Proteomes
Pfam
Interpro
IPR009466
NSP11
IPR011050 Pectin_lyase_fold/virulence
IPR014829 NSP8
IPR042515 Nsp15_N
IPR009461 Coronavirus_NSP16
IPR002589 Macro_dom
IPR014827 Viral_protease
IPR027351 (+)RNA_virus_helicase_core_dom
IPR007094 RNA-dir_pol_PSvirus
IPR036499 NSP9_sf
IPR032505 Corona_NSP4_C
IPR009469 RNA_pol_N_coronovir
IPR008740 Peptidase_C30
IPR037204 NSP7_sf
IPR027352 CV_ZBD
IPR014828 NSP7
IPR036333 NSP10_sf
IPR014822 NSP9
IPR009003 Peptidase_S1_PA
IPR037227 EndoU-like
IPR027417 P-loop_NTPase
IPR037230 NSP8_sf
IPR038123 NSP4_C_sf
IPR013016 Peptidase_C30/C16
IPR018995 RNA_synth_NSP10_coronavirus
IPR029063 SAM-dependent_MTases
IPR041679 DNA2/NAM7-like_AAA
IPR011050 Pectin_lyase_fold/virulence
IPR014829 NSP8
IPR042515 Nsp15_N
IPR009461 Coronavirus_NSP16
IPR002589 Macro_dom
IPR014827 Viral_protease
IPR027351 (+)RNA_virus_helicase_core_dom
IPR007094 RNA-dir_pol_PSvirus
IPR036499 NSP9_sf
IPR032505 Corona_NSP4_C
IPR009469 RNA_pol_N_coronovir
IPR008740 Peptidase_C30
IPR037204 NSP7_sf
IPR027352 CV_ZBD
IPR014828 NSP7
IPR036333 NSP10_sf
IPR014822 NSP9
IPR009003 Peptidase_S1_PA
IPR037227 EndoU-like
IPR027417 P-loop_NTPase
IPR037230 NSP8_sf
IPR038123 NSP4_C_sf
IPR013016 Peptidase_C30/C16
IPR018995 RNA_synth_NSP10_coronavirus
IPR029063 SAM-dependent_MTases
IPR041679 DNA2/NAM7-like_AAA
SUPFAM
ProteinModelPortal
PDB
5HOL
E-value=2e-05 Score=47.8 Identity=33.05%
Cov(Q)=2.62% Cov(P)=69.01%
3D Structure
Ontologies
KEGG
GO
GO:0039694 P:viral RNA genome replication
GO:0033644 C:host cell membrane
GO:0044165 C:host cell endoplasmic reticulum
GO:0005524 F:ATP binding
GO:0008270 F:zinc ion binding
GO:0019082 P:viral protein processing
GO:0016896 F:exoribonuclease activity, producing 5'-phosphomonoesters
GO:0016021 C:integral component of membrane
GO:0004197 F:cysteine-type endopeptidase activity
GO:0003724 F:RNA helicase activity
GO:0039520 P:induction by virus of host autophagy
GO:0008168 F:methyltransferase activity
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0032259 P:methylation
GO:0006351 P:transcription, DNA-templated
GO:0003723 F:RNA binding
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0008242 F:omega peptidase activity
GO:0033644 C:host cell membrane
GO:0044165 C:host cell endoplasmic reticulum
GO:0005524 F:ATP binding
GO:0008270 F:zinc ion binding
GO:0019082 P:viral protein processing
GO:0016896 F:exoribonuclease activity, producing 5'-phosphomonoesters
GO:0016021 C:integral component of membrane
GO:0004197 F:cysteine-type endopeptidase activity
GO:0003724 F:RNA helicase activity
GO:0039520 P:induction by virus of host autophagy
GO:0008168 F:methyltransferase activity
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0032259 P:methylation
GO:0006351 P:transcription, DNA-templated
GO:0003723 F:RNA binding
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0008242 F:omega peptidase activity
Subcellular Location
From MSLVP
Capsid
From Uniprot
Host cytoplasm
Host perinuclear region
Host endoplasmic reticulum
Host membrane
Host perinuclear region
Host endoplasmic reticulum
Host membrane
Topology
Length:
4504
Number of predicted TMHs:
16
Exp number of AAs in TMHs:
367.42632
Exp number, first 60 AAs:
0.00146
Total prob of N-in:
0.00020
outside
1 - 2263
TMhelix
2264 - 2286
inside
2287 - 2292
TMhelix
2293 - 2315
outside
2316 - 2390
TMhelix
2391 - 2413
inside
2414 - 2573
TMhelix
2574 - 2596
outside
2597 - 2605
TMhelix
2606 - 2628
inside
2629 - 2920
TMhelix
2921 - 2943
outside
2944 - 3086
TMhelix
3087 - 3109
inside
3110 - 3129
TMhelix
3130 - 3152
outside
3153 - 3161
TMhelix
3162 - 3184
inside
3185 - 3577
TMhelix
3578 - 3597
outside
3598 - 3601
TMhelix
3602 - 3619
inside
3620 - 3627
TMhelix
3628 - 3650
outside
3651 - 3664
TMhelix
3665 - 3685
inside
3686 - 3691
TMhelix
3692 - 3714
outside
3715 - 3760
TMhelix
3761 - 3783
inside
3784 - 3789
TMhelix
3790 - 3812
outside
3813 - 4504
