CoVDB Coronavirus Database (v3)   
Strain
Porcine_MF041982 (Region: China;  Strain: Porcine deltacoronavirus strain SHJS/SL/2016, complete genome.;  Date: 23-Dec-16)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
MF041982(+):19318-22797
GenBank Accession
AUH28250.1
 

Sequence

CDS
ATGCAGAGAGCTCTATTGATTATGACCTTACTTTGTCTCGTTCGAGCAAAGTTTGCTGATGATCTACTCGATTTGCTCACCTTCCCGGGTGCACATCGCTTCTTACATAAACTCACGAGTAATTCCAGCAGTCTCTACTCGCGGGCTAATAACTTTGATGTTGGCGTTCTTCCTGGCTACCCCACTAAGAACGTTAACCTCTTCTCACCACTTACTAACTCTACTTTGCCCATTAATGGCCTTCATCGGAGTTACCAACCACTCATGCTGAATTGTCTTACTAAAATAACTAACCACACTCTCAGCATGTATCTCCTACCTAGTGAGATACAAACTTATAGCTGCGGCGGTGCCATGGTTAAATACCAGACACATGATGCAGTTCGTATCATTTTAGACCTCACTGCCACTGACCACATCTCTGTTGAAGTCGTTGGCCAACATGGTGAAAATTATGTGTTTGTTTGTAGTGAGCAGTTTAACTATACCACTGCATTACACAACTCTACCTTCTTCTCACTTAATTCTGAGCTTTATTGCTTTACTAATAACACCTACTTAGGTATTCTTCCACCTGATTTAACTGACTTTACGGTCTATCGTACTGGTCAGTTTTATGCTAATGGTTACCTTTTAGGTACTTTACCTATTACGGTTAACTATGTTAGGTTGTATCGGGGTCATTTGTCGGCCAATAGTGCCCACTTTGCCCTTGCAAACCTAACCGATACACTCATAACACTTACCAATACTACTATATCGCAAATCACTTATTGTGATAAGTCAGTAGTTGATTCAATAGCATGCCAGCGCTCTTCTCACGAAGTGGAGGATGGGTTTTACTCTGACCCTAAATCTGCCGTTAGAGCTAGGCAACGTACTATTGTTACACTACCTAAGCTCCCTGAGCTTGAAGTAGTGCAGTTAAATATTTCTGCACACATGGATTTTGGCGAAGCCAGACTTGACAGCGTTACCATCAATGGTAACACATCCTATTGTGTCACTAAGCCTTACTTCAGGCTTGAAACTAACTTTATGTGTACAGGTTGCACTATGAATCTGCGCACTGATACCTGTAGTTTTGACCTGTCAGCAGTAAACAATGGCATGTCATTCTCTCAATTCTGTCTAAGCACTGAATCTGGTGCTTGTGAGATGAAAATTATTGTTACCTACGTATGGAATTACTTGCTAAGGCAGCGTTTGTATGTTACTGCTGTAGAGGGCCAGACTCACACTGGAACCACTTCAGTACATGCAACAGACACTTCTAGTGTAATCACTGATGTCTGCACTGACTACACTATCTATGGAGTCTCTGGTACTGGCATTATTAAGCCATCAGATCTCTTATTGCACAATGGCATAGCATTCACCTCTCCAACAGGTGAGCTTTATGCATTTAAAAATATAACCACTGGCAAAACCCTTCAGGTCTTACCGTGTGAAACCCCTTCTCAACTGATTGTGATAAACAACACCGTTGTCGGTGCTATCACATCCAGTAACTCAACTGAAAATAATAGGTTTACTACTACCATTGTCACACCTACTTTCTTTTATTCCACAAATGCCACCACTTTCAACTGCACCAAGCCTGTTTTGTCCTATGGACCCATCAGCGTGTGTAGTGATGGTGCAATTGCGGGAACATCCACATTACAGAATACTCGACCATCCATAGTTTCACTATACGATGGCGAAGTTGAAATACCATCTGCATTTTCTCTTTCTGTTCAGACGGAGTATTTGCAAGTTCAAGCAGAGCAAGTTATAGTTGATTGTCCACAGTATGTATGCAATGGCAACAGCCGTTGTCTACAATTACTGGCACAATACACCTCAGCTTGCTCTAACATTGAAGCAGCTCTGCATTCCTCTGCACAGTTGGATAGCAGAGAGATTATAAATATGTTTCAAACATCAACACAGTCCTTGCAGTTAGCTAATATTACCAACTTCAAGGGTGACTACAATTTTAGCAGCATACTAACCACCAGACTTGGTGGCAGATCTGCTATTGAAGACCTTCTTTTTAATAAAGTTGTTACTAGTGGCCTTGGCACTGTTGATCAGGACTACAAAGCCTGCTCTAGAGACATGGCCATCGCTGACTTAGTTTGTTCCCAGTATTACAATGGCATCATGGTTCTACCTGGTGTTGTTGATGCTGAGAAAATGGCAATGTATACTGGCTCTCTTACTGGAGCTATGGTATTTGGAGGACTGACTGCCGCAGCGGCAATACCATTTGCCACGGCAGTACAAGCCCGCCTCAATTATGTCGCACTGCAAACAAATGTACTACAAGAAAACCAGAAAATTCTTGCAGAATCATTTAACCAAGCAGTTGGCAATATATCACTTGCACTATCTTCTGTTAATGATGCCATCCAGCAAACTTCTGAGGCTCTTAACACCGTAGCTATTGCTATTAAAAAGATTCAAACAGTTGTTAACCAGCAGGGTGAGGCATTATCACACCTGACTGCACAGCTGTCAAACAATTTCCAAGCAATTTCGACTTCTATTCAAGACATTTACAACCGTCTTGAGGAAGTAGAGGCTAACCAGCAAGTTGACCGTCTCATCACAGGACGGTTGGCTGCACTTAATGCATATGTTACTCAGTTACTCAATCAGATGTCTCAGATTAGACAATCTCGATTGTTAGCTCAGCAAAAGATTAATGAGTGTGTCAAATCTCAGTCGTCCAGATACGGTTTCTGTGGAAATGGCACACACATCTTCTCACTTACACAGACTGCACCAAATGGCATATTTTTTATGCATGCAGTGCTTGTACCCAACAAATTCACACGTGTCAACGCTTCTGCCGGCATTTGTGTGGATAATACGAGAGGCTACTCATTGCAGCCTCAACTTATACTCTACCAGTTTAATAACTCCTGGAGAGTTACACCTAGAAATATGTATGAACCCAGACTGCCCCGGCAAGCTGATTTCATACAATTAACTGATTGCAGCGTTACTTTTTATAACACCACCGCTGCTAATCTTCCCAATATTATTCCTGACGTTATAGATGTCAATCAAACAGTCAGTGATATTATTGACAATTTACCTACAGCAACACCTCCTCAGTGGGATGTTGGTATCTATAACAACACTATTCTCAACCTCACCGTTGAGATTAATGATCTACAAGAGCGGTCTAAAAACCTCTCACAGATTGCAGATCGTTTACAAAATTATATTGACAATCTTAACAATACTCTAGTTGACCTTGAATGGCTCAACAGAGTAGAAACTTACCTTAAATGGCCGTGGTATATATGGCTTGCCATTGCCCTGGCTCTTATTGCATTTGTGACAATCCTCATAACAATCTTTCTTCGTACTGGTTGTTGTGGTGGTTGCTTTGGTTGTTGTGGCGGTTGTTTTGGCCTTTTCTCTAAGAAGAAAAGGTATACCGACGACCAACCAACACCGTCTTTTAAGTTTAAGGAATGGTAG
Protein
MQRALLIMTLLCLVRAKFADDLLDLLTFPGAHRFLHKLTSNSSSLYSRANNFDVGVLPGYPTKNVNLFSPLTNSTLPINGLHRSYQPLMLNCLTKITNHTLSMYLLPSEIQTYSCGGAMVKYQTHDAVRIILDLTATDHISVEVVGQHGENYVFVCSEQFNYTTALHNSTFFSLNSELYCFTNNTYLGILPPDLTDFTVYRTGQFYANGYLLGTLPITVNYVRLYRGHLSANSAHFALANLTDTLITLTNTTISQITYCDKSVVDSIACQRSSHEVEDGFYSDPKSAVRARQRTIVTLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTTSVHATDTSSVITDVCTDYTIYGVSGTGIIKPSDLLLHNGIAFTSPTGELYAFKNITTGKTLQVLPCETPSQLIVINNTVVGAITSSNSTENNRFTTTIVTPTFFYSTNATTFNCTKPVLSYGPISVCSDGAIAGTSTLQNTRPSIVSLYDGEVEIPSAFSLSVQTEYLQVQAEQVIVDCPQYVCNGNSRCLQLLAQYTSACSNIEAALHSSAQLDSREIINMFQTSTQSLQLANITNFKGDYNFSSILTTRLGGRSAIEDLLFNKVVTSGLGTVDQDYKACSRDMAIADLVCSQYYNGIMVLPGVVDAEKMAMYTGSLTGAMVFGGLTAAAAIPFATAVQARLNYVALQTNVLQENQKILAESFNQAVGNISLALSSVNDAIQQTSEALNTVAIAIKKIQTVVNQQGEALSHLTAQLSNNFQAISTSIQDIYNRLEEVEANQQVDRLITGRLAALNAYVTQLLNQMSQIRQSRLLAQQKINECVKSQSSRYGFCGNGTHIFSLTQTAPNGIFFMHAVLVPNKFTRVNASAGICVDNTRGYSLQPQLILYQFNNSWRVTPRNMYEPRLPRQADFIQLTDCSVTFYNTTAANLPNIIPDVIDVNQTVSDIIDNLPTATPPQWDVGIYNNTILNLTVEINDLQERSKNLSQIADRLQNYIDNLNNTLVDLEWLNRVETYLKWPWYIWLAIALALIAFVTILITIFLRTGCCGGCFGCCGGCFGLFSKKKRYTDDQPTPSFKFKEW

Summary

Uniprot
A0A4Y6ER43  
EMBL
MK211169    MK330604    QDF21511.1    QDP14511.1   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002551   Corona_S1
IPR002552   Corona_S2
ProteinModelPortal
A0A4Y6ER43  
PDB
6B7N     E-value=0.0     Score=2096     Identity=97.33%     Cov(Q)=93.62%     Cov(P)=98.01%
3D Structure

Ontologies

GO
GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1159
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
43.1046899999999
Exp number, first 60 AAs:
0.00736
Total prob of N-in:
0.00857
outside
1  -  1097
TMhelix
1098  -  1120
inside
1121  -  1159
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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