CoVDB Coronavirus Database (v3)   
Strain
Porcine_MF769421 (Region: China;  Strain: Swine acute diarrhea syndrome coronavirus isolate 211, complete genome.;  Date: 2017)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
MF769421(+):20486-23878
GenBank Accession
AVM80569.1
 

Sequence

CDS
ATGAAACTTTTTACAGTTTTCACGCTTTTGGCCTCTATTAGAGTGCTTTATGGCTGTGAATCCGTTGATTTTAATTTGTTTAATACAATATTTTCAACACACAGAGGTTTAAGTAATACCACCTCTGTTATCACTGGTGCTTACCCTTCCACCAATAAGTCAGACTGGTCTTGTAATACAAGAACTGGTCATTTGAGTGGTAGTGGTTTCGGCATAGGTTTGTATGTACAGACACCACGTGAACAATACCAGTATGATGGTTCTGGTGCAGGCGGCTATACTATAGCTGTTTCGCCCATTCACGTTACGAATTTGACTTGGGAGCTATGGATCCACCGTAAATGGGGTGTTAACTCAGTTGTTACTGTTAGATTATGTAGGTGGTGGCAGTTTATGAGTTTTAACTCTACTAGCCATGCAGCAGATGCTGGTCCTACTAATGCATTTGAGTGTCTTATAAATGGTTCCTATCCTACTCATCGTAACACTGGTTATATGTTTGGTGTTACTTGGTACAATGATTTAGTTAGAATAGTTTTTCCACCTACTGTTCTTGAAATGCAGCTTGATGGTTTACAGTGGGAACGTGTCCAGTTTAATAGTCCTGTTAATGCTGGACATGCTACTAGGTTTAACGTCGTTAAGGACATTTCCACTGTTTTGGTTGAAACTAACAGTGGTGGCTCTGTTTTTAGATATTCGTATTGTGCTGATGGGTTTGTTAACGGTCTGCAATGTAAGCTTAGACTATTTGATATACCCCCTGGTGTTTATTCTAATAGTGAGGTTGAATATCCTACAGCACTATATACTGTTGTACACAATATGTCAGCCTGTCCAGAGAGGCCAGATAGCTATTGTGGTTCTAATTCGTGCCCTTTTAAGCGTGCAGTGTTTTCTAATTGTATTGTTAATTATACTACCTGGGTTAATCCAGACCAGCGTGATTTTCAACATTTAATTTTGCCTAATGGCAAGTTTAATCCATTTACTGAGTGTAATGGGTTGAACAGAATTGTTGATGGTTGCGTTCCTGGTTTCGTTCTTAGAGTTGGTCGTGGTAAGGCTGTTAACAGAACTATTGTTACACCTTACCTCAAGCCTTATGAATGTTTTGGGTGGTCATGGAATGACAACCAGGATAGTATTTATGACTGGTGGATTGCTGATTTTGTCTCCACTGGTGCTTTCGTTTGTGAGAGTAATCCCGAAGCTCCTAAGACTGGGGTTTGTGTGACATACACTGTAGAGAAAGTTACTTTTCAGGGTGTGCTGTATGAGAGTAATTTTACTTTCGCACAGTATTATAACCTATTGTATGTAGGTTCTCAACTTAGGTATGTGCGTATACTCGGTAAAGTTTATGAAGTTTCATCTTGTTTTGAGGCTTCATATGACGTTTTATACCGTAACAATCAGTCTTTTGGGTTGCTTTATAGAAGTTTCGATTGTAATCAGCTTCATATTAAATCTGCACGTTTTGTGGACCGTTTATTACCGTCTCATAATGGTACTGCTACTGTATTAGGTTGTTTGTTTAATGCTAGTTACGCACCTAATGACACCATGGTAAATTGCACTAACCCACTTGGTGATGGGTTTTGTGCTGATTTGCTAGGTAATGTCGCTGTTAGGCGTATGACTTTTGAAAAGCACGACACTACTTACGTAGCACCTGTTACTAATGAGAGGTACACAGAAATGCCATTGGACCATCAATTAATTTTGACCGAACAGTTTTTGCAAACTACAATGCCTAAGTTCAGCGTTAGTTGCGAGACTTACATATGTGACGTAAGTAAGGCGTGCAAAAATTTGCTATTTAGGTATGGTGGTTTTTGTCAAAAAGTTGAGGCTGACATTCGTGGTGCAGGCATTCTTTTGGACGGTGATGTTAGTAGTTTGTACTCTACTATTGCTGCCAAAACTAGTTCCGTTGTGCCCACTACTGATAGATTCAATGTTTCTCAATTCTTTTTGCCTAAAACGCAGTCTAGTGCCAATAAGTATGAATCTAGGTCTGCTATTGAGGACTTGTTATTCAGCAAAATTGAAACTACTGGCCCAGGCTTTTACGGTGACTATTATAACTGTAAGAAAAATGCTATACAAGACCTTACTTGTGCTCAGTACCATAATGGTATACTTGTTATACCACCTATTATGGATGCTGAGACGTTAGGCATGTATGGCGGGATTGCTGCTGCTTCTGTAACGCTAGGCATTTTTGGTGGACAAGCTGGCATGGCCACATGGTCTGTTGCTATGGCTGGACGTTTAAATGCACTGGGTGTTGTTCAGAATGCTCTAGTCGACGATGTCAATAAGCTTGCTAACGGCTTTAACCAATTGACAGCGAGTGTTAGTAAGCTTGCTTTGACCACTTCTAGTGCATTGCAGGCCATTCAGGCTGTCGTTAACCAGAATGCTGCTCAAGTTGAGTCACTCGTTAGTGGTATTACTGAGAATTTTGGTGCTATTAGCACTAATTTTAAGGTTATATCACAGCGTCTTGACAAACTTGAAGCTGATGTTCAGATGGATAGGCTTATTAATGGCAGAATGAATGTCTTACAGCTTTTTGTCACTAACTACAAGCTAAAAATTGCTGAGCTGCGTAACACACATCGTTATGTGCAATCTCTTATTAATGAATGTGTTTATGCTCAGAGTTTAAGAAATGGTTTTTGCGGTCAGGGACTACATGTACTGTCACTTATGCAAAATGCACCTAGTGGTATAATGTTTTTCCACTATTCGCTGATACCTAACAACACTATCACTGTTAAAACCACACCAGGTCTTTGTGAGAGTGATGAATTGGGTTCTAAGTGCATTGTTGCTAAGGACGGCGTATTAGTCTCTGCTAATTTAAGTTATTGGCAGTGGTCACCGCGTAACCTTTACAAACCAGAAAATCTGACTTTTGCTAATGTCATTGCCGTTTCACGTGGTGCTAATTACACTACATTGAACAAAACTTTTGACATACCTGAATTGAATAGTACTTTTCCCATTGAGGAGGAGTTTCGTGAGTACTTTCAGAATATGTCATCTGAGCTGCAGGTCTTGAAAAATTTGACTGCTGATATGAGCAAGCTTAACATTAGTGCTGAAATTCAGCTTATTAATGAAATTGCTCATAACGTCTCTAACATGCGCGTTGAGGTTGAGAAATTCCAGCGCTATGTTAATTATGTCAAATGGGCTTGGTGGCAGTGGCTGCTTATATTTATTGCTCTAACATTGCTAGCTGGTCTAATGCTTTGGTGCTGTCTTGCTACTGGATGTTGTGGCATGTGTGGTTGTTTAGCTGCTACATGTGCATCATGCTGTGATTGTAGAGGAACTAAACTTCAATCATACGAGATTGAAAAGGTCCACGTCCAATAA
Protein
MKLFTVFTLLASIRVLYGCESVDFNLFNTIFSTHRGLSNTTSVITGAYPSTNKSDWSCNTRTGHLSGSGFGIGLYVQTPREQYQYDGSGAGGYTIAVSPIHVTNLTWELWIHRKWGVNSVVTVRLCRWWQFMSFNSTSHAADAGPTNAFECLINGSYPTHRNTGYMFGVTWYNDLVRIVFPPTVLEMQLDGLQWERVQFNSPVNAGHATRFNVVKDISTVLVETNSGGSVFRYSYCADGFVNGLQCKLRLFDIPPGVYSNSEVEYPTALYTVVHNMSACPERPDSYCGSNSCPFKRAVFSNCIVNYTTWVNPDQRDFQHLILPNGKFNPFTECNGLNRIVDGCVPGFVLRVGRGKAVNRTIVTPYLKPYECFGWSWNDNQDSIYDWWIADFVSTGAFVCESNPEAPKTGVCVTYTVEKVTFQGVLYESNFTFAQYYNLLYVGSQLRYVRILGKVYEVSSCFEASYDVLYRNNQSFGLLYRSFDCNQLHIKSARFVDRLLPSHNGTATVLGCLFNASYAPNDTMVNCTNPLGDGFCADLLGNVAVRRMTFEKHDTTYVAPVTNERYTEMPLDHQLILTEQFLQTTMPKFSVSCETYICDVSKACKNLLFRYGGFCQKVEADIRGAGILLDGDVSSLYSTIAAKTSSVVPTTDRFNVSQFFLPKTQSSANKYESRSAIEDLLFSKIETTGPGFYGDYYNCKKNAIQDLTCAQYHNGILVIPPIMDAETLGMYGGIAAASVTLGIFGGQAGMATWSVAMAGRLNALGVVQNALVDDVNKLANGFNQLTASVSKLALTTSSALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADVQMDRLINGRMNVLQLFVTNYKLKIAELRNTHRYVQSLINECVYAQSLRNGFCGQGLHVLSLMQNAPSGIMFFHYSLIPNNTITVKTTPGLCESDELGSKCIVAKDGVLVSANLSYWQWSPRNLYKPENLTFANVIAVSRGANYTTLNKTFDIPELNSTFPIEEEFREYFQNMSSELQVLKNLTADMSKLNISAEIQLINEIAHNVSNMRVEVEKFQRYVNYVKWAWWQWLLIFIALTLLAGLMLWCCLATGCCGMCGCLAATCASCCDCRGTKLQSYEIEKVHVQ

Summary

Uniprot
A0A240FW36  
Pubmed
28637760   
EMBL
KY967725    ASF90470.1   
Pfam
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
ProteinModelPortal
A0A240FW36  
PDB
6ACK     E-value=4e-82     Score= 292     Identity=32.59%     Cov(Q)=55.66%     Cov(P)=52.29%
3D Structure

Ontologies

GO
GO:0019031  C:viral envelope
 GO:0016021  C:integral component of membrane
 GO:0061025  P:membrane fusion
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1130
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
24.83999
Exp number, first 60 AAs:
0.02595
Total prob of N-in:
0.00164
outside
1  -  1068
TMhelix
1069  -  1091
inside
1092  -  1130
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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