CoVDB Coronavirus Database (v3)   
Strain
Human_IBV_MH779859 (Region: USA;  Strain: Infectious bronchitis virus isolate ArkGA_P60, complete genome.;  Date: 2016)
Gene
spike protein
Description
Annotated in NCBI,  spike protein
Location
MH779859(+):20332-23811
GenBank Accession
AYA44721.1
 

Sequence

CDS
ATGTTGGTGAAGTCACTGTTTCTAGTGACCATTTTGTTTGCACTATGTAGTGCTAATTTATATGACAACGAATCTTTTGTGTATTACTACCAGAGTGCTTTTAGGCCAGGACATGGTTGGCATTTACATGGAGGTGCTTATGCAGTAGTTAATGTGTCTAGTGAAAATAATAATGCAGGTACTGCCCCAAGTTGCACTGCTGGTGCTATTGGCTACAGTAAGAATTTCAGTGCGGCCTCAGTAGCCATGACTGCACCACTAAGTGGTATGTCATGGTCTGCCTCATCTTTTTGTACAGCTCACTGTAATTTTACTTCTTATATAGTGTTTGTTACACATTGTTTTAAGAACGGATCTAATAGTTGTCCTTTGACAGGTCTTATTCCAAGCGGTTATATTCGTATTGCTGCTATGAAACATGGAAGTGCTACGCCTGGTCACTTATTTTATAACTTAACAGTTTCTGTGACTAAATATCCTAAGTTTAGATCGCTACAATGTGTTAATAATCATACTTCTGTATATTTAAATGGTGACCTTGTTTTCACATCTAACTATACTGAAGATGTTGTAGCTGCAGGTGTCCATTTTAAAAGTGGTGGACCTATAACTTATAAAGTTATGAGAGAGGTTAAAGCCTTGGCTTATTTTGTCAATGGTACTGCACATGATGTCATTCTATGTGATGACACACCTAGAGGTTTGTTAGCATGCCAATATAATACTGGCAATTTTTCAGATGGCTTCTATCCTTTTACTAATACTAGTATTGTTAAGGATAAGTTTATTGTTTATCGTGAAAGTAGTGTCAATACTACTTTGACATTAACTAATTTCACGTTTAGTAATGAAAGTGGTGCCCCTCCTAATACAGGTGGTGTTGACAGTTTTATTTTATACCAGACACAAACAGCTCAGAGTGGTTATTATAATTTTAATTTTTCATTTCTGAGTAGTTTTGTTTATAGGGAAAGTAATTATATGTATGGATCTTACCATCCACGTTGTAGTTTTAGACCTGAAACCCTTAATGGTTTGTGGTTTAATTCCCTTTCTGTTTCATTAACATACGGTCCCATTCAAGGTGGTTGTAAGCAATCTGTATTTAATGGTAAAGCAACTTGTTGTTATGCTTATTCATACGGAGGACCTCATGCTTGTAAAGGTGTCTATAGAGGTGAGCTAACACAGCATTTTGAATGTGGTTTGTTAGTTTATGTTACTAAGAGCGATGGCTCCCGTATACAAACTGCAACACAACCACCTGTATTAACCCAAAATTTTTATAATAACATCACTTTAGGTAAGTGTGTTGATTATAATGTTTATGGTAGAACTGGACAAGGTTTTATTACTAATGTAACTGATTTAGCTACTTCTCATAATTACTTAGCGGATGGAGGATTAGCTATTTTAGATACATCTGGTGCCATAGACATCTTCGTTGTACAAGGTGAATATGGCCCTAACTACTATAAGGTTAATCTATGTGAAGATGTTAACCAACAGTTTGTAGTTTCTGGTGGTAAATTAGTAGGTATTCTCACTTCACGTAATGAAACTGGTTCTCAGCCTCTTGAAAACCAGTTTTACATTAAGATCACTAATGGAACACATCGTTCTAGACGTTCTGTTAATGAAAATGTTACGAATTGCCCTTATGTTAGTTATGGCAAGTTTTGTATAAAACCTGATGGTTCAGTTTCTCCTATAGTACCAAAAGAACTTGAACAGTTTGTGGCACCTTTACTTAATGTTACTGAAAATGTGCTCATACCTAACAGTTTTAACTTAACTGTTACAGATGAGTACATACAAACGCATATGGATAAGATCCAAATTAATTGTCTGCAGTATGTTTGTGGCAACTCTTTGGCTTGTAGAAAGCTGTTTCAACAATATGGGCCTGTTTGTGACAACATATTGTCTGTAGTAAATAGTGTTGGTCAAAAAGAAGATATGGAACTTTTAAGCTTCTATTCTTCTACTAAACCATCTGGTTTTAATACACCAGTTTTTAGTAATCTTAGCACTGGTGAGTTTAATATCTCTCTTTTGTTAACAACCCCTAGTAGTCCTAGAGGGCGTTCTTTTATTGAAGATCTTTTATTTACAAGTGTTGAATCTGTTGGATTACCAACAGATGAAGCTTATAAAAAGTGCACTGCAGGACCTTTAGGCTTTCTTAAAGACCTTGCATGTGCTCGTGAATATAATGGTTTGCTTGTGTTGCCTCCTATTATAACAGCAGAAATGCAAACTTTGTATACTAGTTCTCTAGTAGTTTCTATGGCTTTTGGTGGTATTACTTCAGCTGGTGCTATACCTTTTGCCACACAACTGCAGGCTAGAATTAATCACTTGGGTATTACCCAGTCACTTTTGTTGAAGAATCAAGAAAAAATTGCTGCTTCCTTTAATAAGGCCATTGGTCATATGCAGGAAGGTTTTAGGAGTACATCTCTAGCATTACAACAAATTCAAGATGTTGTTAATAAGCAGAGTGCTATTCTTACTGAGACTATGTTAGCACTTAATAAAAATTTTGGTGCTATTTCTTCTATGATTCAAGACATTTACCAGCAACTTGATGACATACAAGCAGATGCTCAAGTGGATCGACTCATAACTGGTAGATTGTCATCACTTTCTGTCTTAGCATCTGCTAAGCAGTCGGAGTACATTAGAGTGTCACAACAGCGTGAGTTAGCTACTCAGAAAATTAATGAGTGTGTTAAATCACAGTCTATTAGGTATTCCTTTTGTGGTAATGGACGACATGTTTTAACCATACCACAAAATGCCCCTAATGGTATAGTGTTTATACACTTTACTTATACACCAGAGAGCTTTATTAATGTTACTGCAGTAGTAGGTTTTTGTGTAAGTCCTGCTAATGCTAGTCAGTATGCAATAGTGCCCGCTAATGGTAGGGGTATTTTTATACAAGTTAATGGTAGTTACTACATCACTGCACGTGATATGTATATGCCAAGAGATATTACTGCAGGAGATATAGTTACGCTTACTTCTTGTCAAGCAAATTATGTAAGTGTAAACAAGACCGTCATTACTACATTTGTAGACAATGATGATTTTGATTTTGATGACAAGTTATCAAAATGGTGGAATGAAACTAAGCACGAGTTGCCAGACTTTGACCAGTTTAATTACACCATTCCCGTTTTAAATATAACTTATGATATTGACAAGATTGAGGAAGTTATTAAGGGACTTAATGATTCCTTGATTGACCTCGAAACATTGTCAATTCTCAAAACTTATATTAAGTGGCCTTGGTATGTTTGGCTAGCCATATTCTTCGCCATTATTATATTCATCCTAATATTAGGATGGGTGTTCTTCATGACTGGTTGTTGTGGTTGTTGTTGTGGATGCTTTGGCATTATTCCGCTAATGAGCAAGTGTGGTAAGAAATCTTCTTACTACACGACTTTTGATAATGATGTGGTAACTTAA
Protein
MLVKSLFLVTILFALCSANLYDNESFVYYYQSAFRPGHGWHLHGGAYAVVNVSSENNNAGTAPSCTAGAIGYSKNFSAASVAMTAPLSGMSWSASSFCTAHCNFTSYIVFVTHCFKNGSNSCPLTGLIPSGYIRIAAMKHGSATPGHLFYNLTVSVTKYPKFRSLQCVNNHTSVYLNGDLVFTSNYTEDVVAAGVHFKSGGPITYKVMREVKALAYFVNGTAHDVILCDDTPRGLLACQYNTGNFSDGFYPFTNTSIVKDKFIVYRESSVNTTLTLTNFTFSNESGAPPNTGGVDSFILYQTQTAQSGYYNFNFSFLSSFVYRESNYMYGSYHPRCSFRPETLNGLWFNSLSVSLTYGPIQGGCKQSVFNGKATCCYAYSYGGPHACKGVYRGELTQHFECGLLVYVTKSDGSRIQTATQPPVLTQNFYNNITLGKCVDYNVYGRTGQGFITNVTDLATSHNYLADGGLAILDTSGAIDIFVVQGEYGPNYYKVNLCEDVNQQFVVSGGKLVGILTSRNETGSQPLENQFYIKITNGTHRSRRSVNENVTNCPYVSYGKFCIKPDGSVSPIVPKELEQFVAPLLNVTENVLIPNSFNLTVTDEYIQTHMDKIQINCLQYVCGNSLACRKLFQQYGPVCDNILSVVNSVGQKEDMELLSFYSSTKPSGFNTPVFSNLSTGEFNISLLLTTPSSPRGRSFIEDLLFTSVESVGLPTDEAYKKCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVVSMAFGGITSAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSAILTETMLALNKNFGAISSMIQDIYQQLDDIQADAQVDRLITGRLSSLSVLASAKQSEYIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFINVTAVVGFCVSPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDKLSKWWNETKHELPDFDQFNYTIPVLNITYDIDKIEEVIKGLNDSLIDLETLSILKTYIKWPWYVWLAIFFAIIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVT

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1690     Identity=83.08%     Cov(Q)=91.29%     Cov(P)=95.75%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1159
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
33.77672
Exp number, first 60 AAs:
1.79165
Total prob of N-in:
0.08771
outside
1  -  1099
TMhelix
1100  -  1122
inside
1123  -  1159
 
 
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