Strain
Bat_MK472069
(Region: Australia; Strain: Alphacoronavirus sp. isolate WA3301, complete genome.; Date: 2018)
Gene
nucleocapsid
Description
Annotated in NCBI,
nucleocapsid
Location
GenBank Accession
Full name
Nucleoprotein
Sequence
CDS
ATGTCTGTTAATTTTGCAGGCACTACTACTCAGCCACGTGGCCGTGTTCCTCTTTCGCTGTTCCAACCACTGCGAAACAACTCTACTCAGCCTCTCCACAAATTGCTGCCTTCCAACGCAGTCCCAAATGGAGCTAGTAGGGACCACCAGATTGGCTATTGGAACGAGCAAATTCGTTGGCGTATGGTTAAAGGCCAGCGCAAGGATTTGCCTTCCAACTGGCACTTCTACTACTTGGGGACCGGACCACACGCTGATCTTTCTTTCAGAACCAGGACCCCTGGGGTGTTCTGGGTGGCTAAAGAAGGCGCTGTCACTAGGCCTACTGGACTTGGCACTCGTGGCCGAAACTCAGAGCCTAAGCGTCCTGTCTTTGATTTCTCTCTGCCGGGAGCGCTCGAAATTGTGGATAACGCATCAAGGCCCAACTCACGTGCCAATTCACGTAATCGGAGTCAGAGTGGCAATCCGCAATCCAGAGCAAACTCTCAAAACAGAAACAGATCTCAAAGCCGAGGCAGACAGCAAAACAATCAGCAGCAAAACCAGCAACGCAATTCTGGAGGTCGAAAGTCTAACCAGAATCGCGGCCAACGTGGTCAGTCTCGAGGTCGATCCCAATCGCGGGGTCGTAACTCTAATGGGCAGACACAACAAGACCTGGTTGCTGCCGTCCGTGAGGCTCTTGCTGGATTAGGCATTACTGCCAATACTAGCAACAAAACACCTTGTGCCCCCGGAAAGAACACACCTAAGCGCTCAAAATCACCTGCTCCCAAGAGTGCTCCTGAACAGATGGGTAAGCCCGTTTGGAAAAGAACACCTCACTCACAGGAGAACGTGACGCGCTGTTTTGGCGAACGTGACGCAGCTCACAACTTTGGTGATGCTCAGCTCACTCGCCTTGGTGTTGACTATGCACACTACCCCCAGATTGCTCAGCTCATCCCATCCCAGGCTGCAATTCTCTTTGGCAGTGAAGTCACAGCCAGAGAGGTTGGCGATGACATCGAAATCACCTATGTCTACAAGATGAATGTGCCCAAGAAGGACCCCTCACTTGTGAGGTTCCTACCACACATTTCAGCTTTCTCAGACAATGTTGAGGATGTCACAATGCCAGATGTCAGTCTTGGTTTTGTAGCCGACACAACACCCCTTCCACAGAGACTCCCTCGTTCCACTTCCATGCAAACACTTGCAGCACCAGAGGACGAGGTCGAGATCGTGGATGATGTAATTGATGATGAAACTTCTGCTTAA
Protein
MSVNFAGTTTQPRGRVPLSLFQPLRNNSTQPLHKLLPSNAVPNGASRDHQIGYWNEQIRWRMVKGQRKDLPSNWHFYYLGTGPHADLSFRTRTPGVFWVAKEGAVTRPTGLGTRGRNSEPKRPVFDFSLPGALEIVDNASRPNSRANSRNRSQSGNPQSRANSQNRNRSQSRGRQQNNQQQNQQRNSGGRKSNQNRGQRGQSRGRSQSRGRNSNGQTQQDLVAAVREALAGLGITANTSNKTPCAPGKNTPKRSKSPAPKSAPEQMGKPVWKRTPHSQENVTRCFGERDAAHNFGDAQLTRLGVDYAHYPQIAQLIPSQAAILFGSEVTAREVGDDIEITYVYKMNVPKKDPSLVRFLPHISAFSDNVEDVTMPDVSLGFVADTTPLPQRLPRSTSMQTLAAPEDEVEIVDDVIDDETSA
Summary
Function
Packages the positive strand viral genome RNA into a helical ribonucleocapsid (RNP) and plays a fundamental role during virion assembly through its interactions with the viral genome and membrane protein M. Plays an important role in enhancing the efficiency of subgenomic viral RNA transcription as well as viral replication.
Subunit
Homooligomer. Both monomeric and oligomeric forms interact with RNA. Interacts with protein M. Interacts with NSP3; this interaction serves to tether the genome to the newly translated replicase-transcriptase complex at a very early stage of infection.
Uniprot
Pubmed
EMBL
Pfam
PF00937
Corona_nucleoca
Interpro
ProteinModelPortal
PDB
5N4K
E-value=1e-38 Score= 136 Identity=51.09%
Cov(Q)=32.62% Cov(P)=91.33%
3D Structure
Ontologies
GO
Subcellular Location
From MSLVP
Nucleus
From Uniprot
Host Golgi apparatus
Host endoplasmic reticulum-Golgi intermediate compartment
Virion
Host endoplasmic reticulum-Golgi intermediate compartment
Virion
Topology
Length:
420
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00353
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00776
outside
1 - 420
