CoVDB Coronavirus Database (v3)   
Strain
Avian_MK581202 (Region: Poland;  Strain: Infectious bronchitis virus strain gammaCoV/Ck/Poland/80/1989, complete genome.;  Date: 8-Jun-89)
Gene
spike protein
Description
Annotated in NCBI,  spike protein
Location
MK581202(+):20516-24022
GenBank Accession
QDQ69121.1
 

Sequence

CDS
ATGTCGGCAACACCACTTTTACTAGTGACTCTTTTGTGTGCACTATGTAGTGCTAATTTGTATAATAATGACACTTACGTTTACTACTATCAAAGTGGCTTTAGGCCATCTACAGGATGGCATTTACATGGAGGTGCTTATGCAGTAGTTAATGTTTCTACTGAATACAATAATGCAGGCAACGGAGAGTGTTCAGCTGGTGCAATTTATTGGAGTAAAAATTTTAGTGCGTCATCTGTAGCCATGACAGCGCCACGAAGTGGTATGTCATGGTCAACTTCGCAATTTTGTACAGCTCACTGTAATTTTACTTATTTTACAGTGTTTGTTACACATTGTTTTAAAGATGGTGCAAATAACTGCCCTCTTACAGGAAAAATTCAACAGGGGTACATTCGTATTTCTGCTATGAGAAATGGCAATGCAAATCCTGCTGGTTTATTTTATAATTTAACAGTTTCTGTGACTAAATATCCTAAATTTAGATCGTTTCAATGTGTTAATAATCAAACATCTGTGTATCTAAATGGTGATCTTGTTTTTACTTCTAATGAGACTAAAGATGTTAGTGCTGCAGGTGTTTATTTTAAATCTGGTGGCCCCATAACTTATAAAGTTATGAGAGAAGTTAAAGCTCTGGCTTATTTTGTTAATGGTACCGCACAAGATGTTATTCTATGTGATGGTTCACCGAAAGGTTTGTTAGCATGCCAGTATAATACTGGCAATTTTTCAGATGGCTTTTACCCTTTTACTAACAGTACTTTAGTTAAGGAAAAGTTTGTTGTTTATCGTGAAAATAGTGTCAGTACTACTCTTAAATTAATTAATTTCACCTTTGTAAATGAAACTAACGCTAAACCTAATATTGGTGGTGTTAATACTTTTACAATTTACCAGACACAAACAGCTCAGAGTGGCTATTATAATTTTAATTTTTCTTTTCTGAGTAGTTTTGTTTATAAGCAATCTGACTTTATGTATGGGTCTTACCACCCAAAATGTAATTTTAGGCCAGAGAATATTAATAATGGTTTGTGGTTTAATTCACTTTCTGTGTCAATTGCATACGGACCCCTTCAAGGTGGTTGTAAGCAATCTGTCTTTTCAAAGAGAACAACTTGTTGTTATGCTTACTCCTATGGAGGTCCTCATAAGTGTAAAGGTGTCTATAATGGTGAGCTAACTACAGATTTTGAGTGTGGATTGCTAGTTTATATCACTAAGAGCGAAGGCTCTCGTATACAAACGGCAACAGAAGCACCTATAATTACGACACACAATTATAATAATATTACTTTAAATAAGTGTGTAGATTATAATATATATGGCAGGATAGGCCAGGGTTTTATTACTAATGTAACCGACTCAGCTGCTAGTTATAATTATCTAGCAGACGGAGGTTTGGCTATTTTAGACACTTCAGGTGCCATAGACACCTTTGTTGTACAAGGTGCTTATGGTCTTAATTATTATAAGGTTAGTCCTTGTGAAGATGTTAATCAACAGTTTGTAGTGTCTGGTGGCAACTTAGTTGGCATACTTACTTCACGTAATGAGTCTGGTTCTCAGCCTCTTGAGAACCAGTTTTATATTAAACTCGTTAATGGAACACGTCGTTCCAGACGTTCTACTAACGATAATGTCACAAGTTGTTCTTATGTTAGTTATGGTAAGTTTTGTATAAAACCAGATGGTTCTGTGTCTACAATAGTACCACAAGAGTTTGAGCAGTTTGTGGCACCTTTACTTAATGTTACTGAAAATGTGCTCATACCTAATAGTTTTAATTTAACTGTTACAGATGAGTACATTCAGACGCGCATGGATAAAGTTCAAATTAATTGCCTACAATATGTTTGTGGTAATTCGTTTGAGTGTAGAAAATTGTTTCAACAATATGGTCCTGTTTGTGACAACATATTGTCTATATTAAATAGTGTTAATCAAAAAGAAGATATGGAACTTTTAAGCTTCTATTCTTCTACTAAACCAAAAGGTTTTAATCAACCAGTCCTTAGTAATTTTAGTACTGGTGATTTCAACATTTCTCTTGTGTTGACACCATCTAGTAATCCTAGTGGTCGATCCTTTGTTGAAGACTTGTTGTTTTCAAGTGTAGAGTCTGTTGGTTTACCAACGGACGAAGCATATAAACAGTGCACAGCAGGCCCTCTAGGTTTTCTTAAAGACCTTGCTTGTGCTAGGGAGTATAATGGTTTGCTTGTGTTGCCTCCTATTATTACAGCAGAAATGCAAACCTTGTATACTAGTTCCTTAGTTGCATCTATGGCTCTTGGTGGTATTACTGCGGCTGGTGCGATACCTTTTGCCACACAACTGCAGGCAAGAATTAATCATTTGGGTATTACCAATTCTCTTTTACTTAAAAATCAAGAAAAGATTGCAGCTTCCTTTAATAAGGCCATTGGTCATATGCAGGAAGGTTTTAAAAGCACCTCTCTGGCATTACAACAAGTTCAAGATGTTGTTAATAAACAGAGTGCTATTCTTTCAGAGACTATGACATCACTTAATAAAAATTTTGGTGCCATTTCTTCTGTGATTCAAGAAATCTACCAGCAACTTGATGCTATTCAAGCAGATGTTCAAGTTGACCGTCTTATTACAGGTAGACTTTCTTCACTTTCTGTATTAGCATCCGCTAAACAGGCTGAATATCTTAGAGTGTCGCAACAGCGTGAGTTGGCTACTCAGAAAATTAACGAGTGTGTCAAATCACAGTCTAATAGGTATTCTTTTTGTGGTGATGGAAGGCACGTTCTTTCAATACCACAGAATGCACCTAATGGTATAGTGTTTTTACATTTTACTTACACTCCAGAGAGCTTTGTTAATGTTACGGCAATAGTAGGATTCTGTGTGAACCCTACTAATGCTAGCCAGTATGCAATAGTACCTGCTAATGGAAGGGGTATTTTTATACAAGTTAATGGTACATACTATATCACAGCACGTGATATGTATATGCCACGAGGCATTACTGCAGGAGACATAGTTACTTTGACTTCTTGTCAAGCAAATTATGTAAGTGTAAATAAGACTGTCATTACTACTTTTGTAGAAGATGATGATTTTGATTTTGATGATGAGTTGTCAAAATGGTGGAATGAAACTAAGCATGAGTTTCCAGACTTAGACCAGTTCAATTACACCATTCCAGTATTAAATATTAGTAATGAAATTGACAGGATTCAAGGGGTAATACAGGGGTTGAATGACTCCCTTATTGACCTAGAAACACTCTCAATTCTCAAAACTTATATTAAATGGCCATGGTATGTATGGCTTGCCATATTCTTTGCCGTTATTATATTCATCCTTATTCTAGGGTGGGTGTTTTTCATGACTGGTTGTTGTGGTTGTTGTTGTGGGTGCTTTGGCATTATTCCTTTAATGAGCAAGTGTGGTAAGAAATCTTCTTATTACACAACTTTTGATAATGATGTGGTGTATGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MSATPLLLVTLLCALCSANLYNNDTYVYYYQSGFRPSTGWHLHGGAYAVVNVSTEYNNAGNGECSAGAIYWSKNFSASSVAMTAPRSGMSWSTSQFCTAHCNFTYFTVFVTHCFKDGANNCPLTGKIQQGYIRISAMRNGNANPAGLFYNLTVSVTKYPKFRSFQCVNNQTSVYLNGDLVFTSNETKDVSAAGVYFKSGGPITYKVMREVKALAYFVNGTAQDVILCDGSPKGLLACQYNTGNFSDGFYPFTNSTLVKEKFVVYRENSVSTTLKLINFTFVNETNAKPNIGGVNTFTIYQTQTAQSGYYNFNFSFLSSFVYKQSDFMYGSYHPKCNFRPENINNGLWFNSLSVSIAYGPLQGGCKQSVFSKRTTCCYAYSYGGPHKCKGVYNGELTTDFECGLLVYITKSEGSRIQTATEAPIITTHNYNNITLNKCVDYNIYGRIGQGFITNVTDSAASYNYLADGGLAILDTSGAIDTFVVQGAYGLNYYKVSPCEDVNQQFVVSGGNLVGILTSRNESGSQPLENQFYIKLVNGTRRSRRSTNDNVTSCSYVSYGKFCIKPDGSVSTIVPQEFEQFVAPLLNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSFECRKLFQQYGPVCDNILSILNSVNQKEDMELLSFYSSTKPKGFNQPVLSNFSTGDFNISLVLTPSSNPSGRSFVEDLLFSSVESVGLPTDEAYKQCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMALGGITAAGAIPFATQLQARINHLGITNSLLLKNQEKIAASFNKAIGHMQEGFKSTSLALQQVQDVVNKQSAILSETMTSLNKNFGAISSVIQEIYQQLDAIQADVQVDRLITGRLSSLSVLASAKQAEYLRVSQQRELATQKINECVKSQSNRYSFCGDGRHVLSIPQNAPNGIVFLHFTYTPESFVNVTAIVGFCVNPTNASQYAIVPANGRGIFIQVNGTYYITARDMYMPRGITAGDIVTLTSCQANYVSVNKTVITTFVEDDDFDFDDELSKWWNETKHEFPDLDQFNYTIPVLNISNEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIFFAVIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVYEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1766     Identity=82.63%     Cov(Q)=90.67%     Cov(P)=95.84%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1168
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
31.44942
Exp number, first 60 AAs:
1.1454
Total prob of N-in:
0.04800
outside
1  -  1099
TMhelix
1100  -  1122
inside
1123  -  1168
 
 
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