CoVDB Coronavirus Database (v3)   
Strain
Avian_MN512434 (Region: Canada;  Strain: Infectious bronchitis virus isolate IBV/Ck/Can/17-035614, complete genome.;  Date: 2017)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
MN512434(+):20403-23903
GenBank Accession
QGM12378.1
 

Sequence

CDS
ATGTTGGTAACACGTCTTTTATTAGTGACTCTTTTGTTTGCACTATGTAGTGCTGTTTTGTATGATAATAATTCTTATGTGTATTATTATCAGAGTGCTTTTAGGCCAGGAAGTGGTTGGCATTTACATGGAGGTGCTTATGCAGTAGTTAATGTGTCTGCGCAAACCAGCCCTGGCAGTTGCACTGCTGGTGCTATTGGATACAGTATGAATTTCAGTGCAGCCTCAGTAGCCATGACTGCACCATTAAATGGTATGTCATGGTCAGGCAGTCAATTCTGTACGGCTCACTGCAATTTTACTAATATTGTAGTGTTTGTTACACACTGCTTTAAAAGGGGACAGCATTTTTGTCCTTTAACAGGTTTTATAGAGCAAAACTATATTCGTATTGCTGCTATGAGAATTAATGGTACTGGTCCTAGAGACTTATTTTATAATTCAACAGTTTCTGTGAGTAAGTACCCTAAATTTAGATCACTTCAATGTGTTAATAATCAAACATCTGTATATTTAAATGGTGATCTTGTTTTTACTTCTAATGAGACTTTATATGTCTCAGGTGCTGGTGTTGATTTTACAGCTGGTGGACCCATAACTTATAAAGTTATGCAGGAAGTCAAAGCCCTGGCTTATTTTGTTAATGGTACCGCACACGATGTTATTTTGTGCGATGGTACACCCAGAGGTTTGTTAGCATGCCAATATAATACTGGCAATTTTACAGATGGCTTCTATCCTTTTACTAATAGTAGTTTAGTTAAGGAAAGGTTTATTGTCTATCGTGAGAATAGTGTTAATACCACTTTGGTTTTACATAATTTTACGTTTTTTAATGAGACTAGTGCACCACCTGCCGGCGGTGATATTAGTGCTACATTTCAAACTTATCAAACAGTAACAGCTCAGAGTGGTTATTATAATTTTAATTTTTCATTTCTGAGTGGTTTTGTTTATAAGGCAAGCGATTTTATGTATGGGTCTTACCACCCAAAGTGTAATTTTAGACCAGAAACTCTTAATAATGACCTCTGGTTTAATTCACTGTCAATCTCACTTGCTTATGGCCCACTACAAGGGGGCTGTAAGCAGTCGGTTTTTAATAATAGAGCAACGTGTTGTTATGCTTATTCATACAACGGTCCTCGTGCTTGTAAAGGTGTCTATCGAGGCCAGTTACAACAATTGTTTGAATGTGGGTTGCTAGTTTATATTACTAAGAGCGATGGCTCTCGTATACAAACAACAACAAAACCACATGTATTAACTACACATTTTTATAATAACATCACTTTAGATAAGTGTGTTGATTATAATATATATGGTAGAGTAGGCCAAGGTTTTATAACTAATGTAACCGACTCAACTGCTGCTTATAATTATTTAGCAGATGGAGGGTTAGCTATTTTAGACACATCAGGTGCTATAGACATTTTCGTTGTACAAGGTGAATATGGCCTTAATTTTTATAAGGTTAACCCTTGCGAAGATGTTAATCAGCAGTTTGTAGTGTCAGGCGGTAAGTTAGTAGGCATTCTGACTTCTCGTAATGAAACTGATTCTCATCATCTTGAAGGTCAGTTTTATATTAAGTTAACTAATGGAAGCCGTCGTTCTAGACGTTCTATTAGTAGTAATGTTACTAATTGTCCATATGTTACTTATGGCAGGTATTGCATTGAACCTGATGGTTCAGTTAAACAAATAGTACCACAAGAATTAGAACAATTTGTGGCACCGTTACTTAATGTTACTGAATATGTACTCATACCTAATAGTTTTAATTTAACTGTCACAGATGAGTACATACAAACACGTATGGATAAGGTTCAAATAAATTGCCTTCAATATGTTTGTGGCAATTCTTTGGAGTGCAGACATCTATTTCAACAATATGGTCCTGTCTGTGACAACATATTGTCCGTCGTTAATAGTGTTGGTCAAAAGGAAGATATGGAGCTTTTAAGTTTTTATTCTTCTACTAAGCCAACGGGTTATAATACACCAATTTTTAATAACTTAACAACTGGTGCATTTAATGTTTCACTTCTCCTACCGCAACCAGGTAGTCCAAGGGGCCGATCTTTTGTAGAAGATTTGCTATTTACTAGTGTTGAGACTGTCGGATTACCGACTGACGCTGAGTATAAGAAGTGCACAGCAGGACCTTTGGGCACTCTCAAAGATCTTATCTGTGCTCGTGAATATAATGGCCTATTAGTGTTGCCTCCAATTATTACAGCGGATATGCAAACAATGTATACCGCTTCTTTAGTAGGGGCTATGGCTTTTGGTGGTATTACATCAGCTGCAGCTATACCTTTTGCTACGCAGATTCAGGCGCGAATTAATCATCTTGGTATTACACAGTCTTTGTTAATGAAAAATCAAGAAAAGATTGCTGCTTCCTTTAATAAGGCTATTGGCCATATGCAGGAAGGGTTTAGAAGTACTTCTCTAGCATTACAGCAGATTCAAGATGTTGTTAATAAGCAGAGTGCTATACTTACAGAGACTATGCAATCACTTAATAAAAATTTTGGTGCTATTTCTTCTGTGATTCAAGATATCTACCAGCAACTTGATTCTATACAAGCAGATGCTCAAGTGGATCGTCTTATAACTGGTAGGTTGTCATCACTTTCAGTCTTAGCATCTGCTAAGCAGTCAGAGTACCTTAGAGTATCACAACAGCGTGAGCTAGCCACTCAGAAGATTAATGAGTGTGTTAAATCACAGTCTAGTAGATATTCATTTTGTGGTAATGGAAGACATGTTCTAACTATACCGCAAAATGCACCTAATGGTATAGTGTTTATACACTTTACTTACACTCCAGAGAGTTTTGTTAATGTTACTGCAATAGTGGGTTTTTGTGTAACGCCTGCTAATGCAAGTCAGTATGCAATAGTGCCTGCTAATGGTAGAGGTATTTTTATACAGGTTAATGGTAGTTACCATATTACAGCACGTGATATGTATATGCCAAGAGATATTACTGCAGGAGACATAGTTACGCTTACATCTTGTCAAGCAAACTATGTTAGTGTAAATAAAACAGTCATCACTACCTTTGTAGAAGATGACGATTTTGATTTTGATGATGAGTTGTCAAAATGGTGGAATGACACTAAGCACGAGTTGCCAGACTTTGATCAGTTTAATTACACCATTCCTGTCTTAAATATAACTTATGACATTGACAAGATTGAAGAAGTCATCAAGGGCCTTAATGATTCCTTGATAGACCTCGAAACATTGTCAATTCTCAAAACTTATATTAAGTGGCCTTGGTATGTTTGGCTAGCCATATTCTTCGCCATTATTATCTTCATCCTAATATTAGGGTGGGTGTTTTTCATGACTGGTTGTTGCGGTTGTTGTTGTGGATGTTTTGGCATTATTCCTCTAATGAGCAAGTGTGGTAAGAAATCTTCTTATTACACGACTTTTGATAATGATGTGGTAACTGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MLVTRLLLVTLLFALCSAVLYDNNSYVYYYQSAFRPGSGWHLHGGAYAVVNVSAQTSPGSCTAGAIGYSMNFSAASVAMTAPLNGMSWSGSQFCTAHCNFTNIVVFVTHCFKRGQHFCPLTGFIEQNYIRIAAMRINGTGPRDLFYNSTVSVSKYPKFRSLQCVNNQTSVYLNGDLVFTSNETLYVSGAGVDFTAGGPITYKVMQEVKALAYFVNGTAHDVILCDGTPRGLLACQYNTGNFTDGFYPFTNSSLVKERFIVYRENSVNTTLVLHNFTFFNETSAPPAGGDISATFQTYQTVTAQSGYYNFNFSFLSGFVYKASDFMYGSYHPKCNFRPETLNNDLWFNSLSISLAYGPLQGGCKQSVFNNRATCCYAYSYNGPRACKGVYRGQLQQLFECGLLVYITKSDGSRIQTTTKPHVLTTHFYNNITLDKCVDYNIYGRVGQGFITNVTDSTAAYNYLADGGLAILDTSGAIDIFVVQGEYGLNFYKVNPCEDVNQQFVVSGGKLVGILTSRNETDSHHLEGQFYIKLTNGSRRSRRSISSNVTNCPYVTYGRYCIEPDGSVKQIVPQELEQFVAPLLNVTEYVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRHLFQQYGPVCDNILSVVNSVGQKEDMELLSFYSSTKPTGYNTPIFNNLTTGAFNVSLLLPQPGSPRGRSFVEDLLFTSVETVGLPTDAEYKKCTAGPLGTLKDLICAREYNGLLVLPPIITADMQTMYTASLVGAMAFGGITSAAAIPFATQIQARINHLGITQSLLMKNQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSAILTETMQSLNKNFGAISSVIQDIYQQLDSIQADAQVDRLITGRLSSLSVLASAKQSEYLRVSQQRELATQKINECVKSQSSRYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVTPANASQYAIVPANGRGIFIQVNGSYHITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVEDDDFDFDDELSKWWNDTKHELPDFDQFNYTIPVLNITYDIDKIEEVIKGLNDSLIDLETLSILKTYIKWPWYVWLAIFFAIIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVTEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1717     Identity=79.62%     Cov(Q)=90.91%     Cov(P)=95.93%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1166
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
56.9789399999999
Exp number, first 60 AAs:
13.23943
Total prob of N-in:
0.57475
POSSIBLE N-term signal
sequence
outside
1  -  1097
TMhelix
1098  -  1120
inside
1121  -  1166
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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