CoVDB Coronavirus Database (v3)   
Strain
Avian_MN531554 (Region: China;  Strain: Avian coronavirus;  Date: 2012)
Gene
spike protein
Description
Annotated in NCBI,  spike protein
Location
MN531554(+):20421-23912
GenBank Accession
QJS39708.1
 

Sequence

CDS
ATGTTGGTGAAGTCACTGTTTTTAGTGACTCTTTTGTTTGCACTATCTAGTGCTACTTTGTATGACAATGATACTTATGTTTATTACTATCAGAGCGCTTTTAGACCGCCAAATGGTTGGCATTTACATGGTGGTGCTTATGCAGTAGTCAATGTTACTACTCAATTTAACAATGCAGGCAATGCGCCTTTCTGTATTGGTGGTAGTATTCAAGGCGGCTATGTATTTAATGCTTTTTCTGTAGCTATGACCGCTCCGAATAATGGTATGACTTGGTCTACAGCACAATTTTGTACTGCACACTGCAATTTTTCGGACGTTACAGTGTTTGTTACACATTGTTTTAATGCAACTCGAGGCGCTTGTCCTACGGGCTTTGTTCCAAGGAATTATATACGTATTTCTGCTATGAAAAATGGTTCTCTGTTTTATAATTCAACAATTAGTGTATTTAAATACCCTAGATTTATGTCATTTCAGTGTGTTAGTAATTTAACATCTGTCTATTTGAATGGTGACCTTGTTTACACTTCTAATGAGACCACAGACGTTACATCTGCAGGTGTTTATTTTAAAGCCGGTGGACCTATAACTTATAAAATTATGAGAGAAGTTAAAGCCTTGGCTTATTTTATTAACGGTACTGCACAAGATGTTATTTTGTGTGATGACACACCTAGAGGTTTGCTAGCATGTCAATATAATACTGGCAATTTCTCAGATGGTTTCTATCCTTTTACTAATAGTAGTTTAGTTAAGCAAAGGTTTGTTGTTTATCGTGAGAATAGTGTTAATACTACTCTTACTTTAACCAACTACACTTTTTATAATGAGACTAATGCCTCACCTAATTCAGGTGGTGTCCATACTATCTCAACTTATCAAACACAAACTGCTCAGAGTGGTTATTATAATTTTAATTTATCATTTCTGAGTAGTTTTGTGTATAGAGAGTCTAATTTCATGTATGGGTCTTACCACCCAGCATGTAATTTTAGACTAGAAACTATTAATAATGGCTTGTGGTTTAACTCACTATCAGTCTCATTAGCTTATGGCCCTCTTCAAGGTGGGTGTAAGCAATCAGTTTTTACAGGTAGAGCTACTTGTTGTTATGCGTACTCCTACAATGGACGTCGCCAGTGTAAAGGAGTTTACAGTGGTGAGTTACAACAAAATTTTGAATGTGGGCTGTTGGTTTATCTTACTAAGAGTGATGGCTCTCGTATACAAACAGCCACAGAACCACCGGTTATAACTCAACACAATTATAATAATATTACTTTAAATACTTGTGTTGAGTACAATATATATGGTAGAGTTGGCCAAGGCTTTATAACTAATGTAACCGACTCAGCAGCTAGCTATAATTATTTAGCAGATGCTGGATTGGCAATTTTAGATACTTCAGGTGCCATAGACATTTTCGTTGTACAAGGTGAATATGGTTTCAATTATTATAAGGTTAACCCTTGTGAAGATGTTAATAAGCAGTTTGTAGTGTCAGGAGGCAAGTTAGTAGGCATTCTGACTTCTCGTAATGAAACTGGTTCTCAGCCTCTTGAAAATCAGTTTTATATTAAGTTAACTAATGGAAGTCGTCGTTTTAGACGTTCTATTAGTAGTAATGTTACTAGTTGTCCATATGTTAGTTATGGCAGGTATTGCATTGAACCTGATGGTTCACTTAAACAAATAGTACCACAAGAATTACAACATTTCGTGGCACCTTTACTTAATGTTACAGAATATGTGCTCATACCTAACAGCTTTAATTTGACTGTTACAGATGAGTACATACAAACTCGTATGGATAAAGTTCAAATTAACTGCCTTCAATATGTTTGTGGAAATTCTATTGAATGCAGAAAATTGTTTCAGCAATATGGCCCTGTCTGTGACAACATATTGTCTGTAGTAAATAGTGTTGGTCAGAAAGAAGACATGGAACTTTTACACTTCTATTCTTCTACTAAACCAAAAGGTTTTGATACACCAGTTCTGAGTAATGTTAGTACTGGTGGTTTTAATATTTCACTTTTGTTAACACCACCTAGTAGTCCTAGAAGGCGTTCTTTTATAGAAGATTTGTTATTTACAAGTGTTGAAACAGTTGGGTTGCCAACTGATGCTGAATATAAAAAATGCACAGCGGGACCTTTGGGTACTCTTAAAGATCTTATCTGTGCTAGGGAATATAATGGTTTACTAGTGTTGCCTCCAATTATTACTGCGGATATGCAAACAATGTATACTGCTTCTTTAGTAGGAGCTATGGCTTTTGGTGGTATTACATCAGCTGCAGCTATACCTTTTGCTACACAGATTCAGGCAAGAATTAATCATCTTGGTATTACACAGTCTTTGTTACTGAAAAACCAAGAAAAGATTGCTGCTTCCTTTAATAAGGCCATTGGTCATATGCAGGAAGGTTTTAGAAGCACTTCGCTAGCATTACAACAGGTTCAAGATGTTGTTAATAAGCAGAGTGCTATTCTTATGGAAACTATGAATTCTCTTAATAAGAATTTTGGTGCCATTTCCTCAGTCATTCAAGACATTTATGCGCAACTTGATGCAATTCAAGCAGATGCTCAAGTTGATCGTCTTATCACTGGTAGACTATCGTCTCTTTCAGTGCTAGCCTCTGCTAAGCAGTCTGAATACCTTAGAGTATCACAACAGCGTGAGTTGGCTACTCAAAAAATTAATGAGTGTGTCAAATCACAATCTACTAGGTATGGATTTTGTGGTAGTGGAAGACATGTTCTTTCGATACCACAAAATGCACCTAATGGTATAGTGTTTATACACTTTACATATACTCCAGAGAGTTTTGTTAATGTCACAGCAATAGTTGGCTTTTGTGTAAACCCACCTAATGCTAGTCAGTATGCAATAGTACCTGTTAATGGTAGGGGTGTTTTTATACAAGTTAATGGCACATACTATATTACGTCACGTGACATGTATATGCCAAGAGATATTACAGCAGGAGATATAGTTACCTTGACTTCTTGTCAAGCAAACTATGTTAGTGTTAACAAAACCGTCATTACTACATTTGTGGATAACGATGATTTTGATTTTGAGGATGGATTGTCAAAATGGTGGAATGATACTAAGCATGAGCTACCAGACTTTGACGAATTCAACTACACAGTACCTGTACTTAATATTAGTAGTGAGATTGATCGTATTCAAGGTGTTATACAGGGTCTTAATGACTCTTTGATAGACCTCGAAACACTCTCAATTCTCAAAACTTACATTAAGTGGCCTTGGTATGTGTGGTTTGCTATAGCTTTTGCCATCATTATCTTCATCCTAATATTAGGTTGGGTGTTTTTCATGACTGGTTGTTGTGGTTGTTGTTGTGGATGCTTTGGCATTATTCCATTAATGAGTAAGTGTGGTAAGAAGTCTTCTTACTACACGACTTTTGATAATGATGTGGTAACTGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MLVKSLFLVTLLFALSSATLYDNDTYVYYYQSAFRPPNGWHLHGGAYAVVNVTTQFNNAGNAPFCIGGSIQGGYVFNAFSVAMTAPNNGMTWSTAQFCTAHCNFSDVTVFVTHCFNATRGACPTGFVPRNYIRISAMKNGSLFYNSTISVFKYPRFMSFQCVSNLTSVYLNGDLVYTSNETTDVTSAGVYFKAGGPITYKIMREVKALAYFINGTAQDVILCDDTPRGLLACQYNTGNFSDGFYPFTNSSLVKQRFVVYRENSVNTTLTLTNYTFYNETNASPNSGGVHTISTYQTQTAQSGYYNFNLSFLSSFVYRESNFMYGSYHPACNFRLETINNGLWFNSLSVSLAYGPLQGGCKQSVFTGRATCCYAYSYNGRRQCKGVYSGELQQNFECGLLVYLTKSDGSRIQTATEPPVITQHNYNNITLNTCVEYNIYGRVGQGFITNVTDSAASYNYLADAGLAILDTSGAIDIFVVQGEYGFNYYKVNPCEDVNKQFVVSGGKLVGILTSRNETGSQPLENQFYIKLTNGSRRFRRSISSNVTSCPYVSYGRYCIEPDGSLKQIVPQELQHFVAPLLNVTEYVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSIECRKLFQQYGPVCDNILSVVNSVGQKEDMELLHFYSSTKPKGFDTPVLSNVSTGGFNISLLLTPPSSPRRRSFIEDLLFTSVETVGLPTDAEYKKCTAGPLGTLKDLICAREYNGLLVLPPIITADMQTMYTASLVGAMAFGGITSAAAIPFATQIQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQQVQDVVNKQSAILMETMNSLNKNFGAISSVIQDIYAQLDAIQADAQVDRLITGRLSSLSVLASAKQSEYLRVSQQRELATQKINECVKSQSTRYGFCGSGRHVLSIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPPNASQYAIVPVNGRGVFIQVNGTYYITSRDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFEDGLSKWWNDTKHELPDFDEFNYTVPVLNISSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWFAIAFAIIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVTEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1817     Identity=84.62%     Cov(Q)=90.54%     Cov(P)=95.29%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP

Topology

Length:
1163
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
41.3681
Exp number, first 60 AAs:
2.18812
Total prob of N-in:
0.10151
outside
1  -  1094
TMhelix
1095  -  1117
inside
1118  -  1163
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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