Strain
Fish_NC_008516
(Region: Germany; Strain: White bream virus, complete genome.; Date: )
Gene
replicase polyprotein 1a
Description
Annotated in NCBI,
replicase polyprotein 1a
Location
GenBank Accession
Sequence
CDS
ATGTCAATCCTTTTTGGAAACAGACAAGCAAACGCTACAAAGCGCTCAGACATGGCATCTGTTGCACGTGCAGTCTACGAAGTTGATCTCATCTCGACCAAGTACGCCCGCCGCACCCAAGAACGTCTTGCCCATAACAAGCACGCAAAACCATCTTACCCTTCCGTCTTCTTCGGAAGACGAATGAAGGCTGTGAAAGAACCAACATTCACACCTTCAACCCTCTTCTTTGAAGAGGCTACCTTGCCTAAGGTGCTTGCATCTAAGGCAAAACCAGACACGGGTATTAAAACACGCCGTGTCTACGTGGCTGATAGTCTTACTATCAATGGCCACACCTACCCCATCGTAGGTCACTTTGTTGAAATGGCAGTTTCCAAAAAGGAAGCTTTCCCAATTCAACCAAAACGGGTCAAGCCTAAACCACTCATGGCCAAACCCATCCCCAACATCCGTCGTACCTTCTTAACACCAGAAGAACGCACCAACACCCCAACAACACCAACAACAACAACAACAACACCATTTGTTGCAGGTGAAACAGCTGGTCCAACCATTGAGTACACACCAACCTCAATTGATCTACCATTTGCAATGCCAACAGTCAAGCAAATCAAAGAAAATGCCCACACAATCCTCAGAGAACAAGACGACTGTCTTCGTTTTGCCCAAACAGCCCTATTCAAACATCTAGGAACTGTCACCCACACCACACCAAACCACGCCACAACATTCCAAGTTAAAGGAAGAACATCCCTCCTCACATTCGAATGGCGCAAAACAACTCAGTCACCACTCACTGACGGACATTTCTATTTGCAAACAGCAAACAACCATGCAGAACTCATGCAACCAGTTGAAGGTAAACTCACAACCATCTTCACCACCACCATCCAGCAAGGCACAACACACAGCCTTCACCTCATCAAGCAAGAATCAGCAAGAACGCTTAAAACACGCAAACCACTGAAACTTGTAACATACAAACAAGAAACACCCACAACCACAATCACACCACAGTCCCTAAAAAAGACAATCACGTACATCCCCGGATCCTTCTGCATAAATGTTGCTGAACCCACACTTCAAAGCGTAATGCGTCGTCAACCACTCACACCAACACCAAATGACGCCCTCCTCCAAATTTATCACAAGTTAGGATGCACCACCAAAAGCCCCAACCACGCTTCAACATTTGAACTATTCGGTAACACCTACACATGGTATCCAGTACAACATACTAATAATCTACTCCACAAAGACCCCAACAGAAGATTCTTCCTTCACATCACAGGCCAAACACCTCAACTCCTCATTCGCACAGAAAGAAAAACATTCCTCACCCTTCAAGATGAAGTAACATATATTTCTGGCAAACTATTTGTCATGAATCATGCACCCATCCAAGGGGAATACAAAACTCAAACCGCCGAATGGGTAGGAAGTTACAACATGGCCAAAACACCAAAAGCCATCAAGCCTGCTAAGACAGTAGAATACATCAACACAACACCATGCCACAAACCAGCAACCATGCCTGCACCAATCACCTACAGACAATGCCCCTACACATGGACCCTTCATGAACCATCAATCAGCAAAGTGCAAAGAAACCTTTTCCACATCCCCAAAACAGCCACAAACTGCCTGGACAGAATTCAAAAAGCCCTTTTCCCTGAAATTGTAACTTCAAACCAGCATTTCCCTATCGGATTCACCATCCAAACCGACACAACAATGCAATCATATGAATGGGCCATTCTGTGCAAAAAAGTCACCAGAACATACTACCTCGCAGTGCAAAACCACCACGCTACCCTTTGGTATAAATGTGCCCAAGTATACATGTGCCTTTCAGACGACATTGCCCCAACCACTGAACTCCAAGGCTCAGTCTACATTCTTAACAAAGTAACAGACCCGGGTTTCTATCAAAACACCAGACAATGGTGCGGTTCCAATGACGATCTCCATGAGCCTAAACATCTCATCAAGAATCTGGCCAACGGTGACGTAAATAACATCGCACACTGCTCCCTCACACCATGGACAACAACACCACTAGTGTACTCAACCCAGAAAAACAAACTCACACGCAAGTTAATCCACTATTACAATGCAACATACACAGTCCAAGTCCCCAAAGAAAACCCTAATGCCCAACCATCCACCATGAAGTGTGCTTACAAAGCATACATTGACCTCGCCACACCAACAGAGCTTCAAATCCATTTAGATCTAGAAATCCAAGGTAAACTATACTCACAAACGGCCCAGAAAAAAGGATCAAAATTCAATAAACTGGATATTCCAACATTCGGTGACATTCTCAAAGGAACCCTGTACGTTTTCTCATCCAAAGTACTCCTCTACGAACAACCAAAAAGATGCACATCAGTCTGCTTCCACCTCCCAAACAACGCCCAATCATTCTTCTTCAACACAGAAACAATCCAAACATTTGAAGATCTATTCGCAAGAATCAGCTCGGAAGAAGTAGAAGACAACCTTGTGCTCATCAAAGGGTTCGTTCCATGTCTCGGTGCCATTTACATCACAAAAGACCTCAAATTCATTCAACCAGAACTGAAAGAAGACTTCAAACACCCCACAACATACTACACATTCACAACAACTGTTGACCCAGAACAAGTCCTGTATTCACTCCATCCATCATTCACAGACATTGTGCCACCACACGGTTTCCCATACTACACATTTGCCAAACTGAACAATCACATTGACGCATGGAACATCACAGACGACCAAGCTGATACACTGGCCGAAGCCCAACCAATCATCTTCCAATGGCCAACTGAAGAAGCAACAATCACAACACCATACAAGGTCCTTCACTACGAACATCTTGAAGGTCTTGACTACATCTCCCTTTCCTCTTTCAACACAGTGGAATGTCCTGAAGAAACACAATCAGCACATGACTCCAGTAGTGAAAGCGAATCAGAAGATGAAGAGCTTCCAGCCCACCCTCTGTCCAATGCACCATCACAAGCATCGCTGTCATCAGTTGCCTCAACTGCCCCACCAACTTCCCCAACAAGCTCCCCAACACCATCACCAACACCACTCCAACAACAAGTAGGTTTGAAAGGAAAAGAAGTTCCAGTAGGCGGATGGGTGCTAGTATCTGAAGAAGAAACACCTTCCGAAGAAGTAGACAGTCCAAAACTCCTGCCCAATGAAGTACCCCTCTCATTCGACTTTGACCTTCCCATTGAACCAATCACAAGACCAATCTCACCAGAACTCCAACAACCAATCCTCACACACTACGAACACCCAACATCACCAACACCATCAGTAGAAATTGAAATTGACTTCGGGTCCTATGAAAACCTCACCCTTCAAACAGAAGAAACAGTCACCACAGAAGTTCAACCTGAACCTACACCAGCCCCAACACCTGAACCAACAATAGTAACAGAAACAGTCCAAGAAACACCAGTGCCAACAGAAACAACACAAGAATCAACACCTGAATCAACACCTGAATCAACACCTGAACCAACACCTGAATCAACATCTGAATCCACACTAGAACCAGAACATGTAGCAACACCATCACAGTCCCCAACACACATCACAGTCACAGAAATCACACATGAACCAGAAACACCAGACTCATGGTCCGAAAGATACGACAGTACATCTAACATCCCAGAAGTGTTCAACCAACTCTCATTTGGTTCAACAGACTCAGTTAAAATTACAACACCAAAAACTGAAACACCCGACGAGCCTCAACAACCCACCGTTGAGACCGTGTCAGCAGCCCAACAACTTCTGCAGATCGTTCAGACTGCCACACCAGACATCGCACAACTCATGTCTGAGCTTCCCCCATACCGCCTCATCTGTATTGGATCATACTGCCCCATTCTAGCTGAAAACATCTCCAAACAATTGCCCACAGCTGTCACAACACCGACAGACGCAGATATTCCCACAGTCATTTTCAATGTGTCCGAAGAAACTATGGATACAGTAATCAACACCGTCAAAACTAAACACCAGGCCAACCACCTCACATTTAGTCTAACAACAATCATTGCCCTAGATGTCCCAAAAGACAAATCACTCCCACTCCAACAAATCTATGACAAACTCACACAACAAGATTACAACACAGACTTCATCTATGAATCACACCACAGACAACCCAAAGAATCACTCACACACGCATCAGTTCTATCAGCATACACAGCATCATACAAAACAACAGCCATCAAATCAATTGCAGATAATGCAGTTGTTCTCGATATAGGTTACGGAAAAGGTAATGACGGTCCCCGTTATGCCGTTCGTCCACTAACAGTAACAGGTATTGACACAGCAGCCCGTATGCTCGCCATCGCTGACCAGAACAAACCAGAAAATGTCACACTAGTCAAACAAGGATTTTTCACACACATAACCAAAACATCCAATACCTACACACATGTCATCGCATTCAACAGCCTCCACTACCCACTCGCATCTTCACACCCAGACACACTGGTCCAACGCCTTCCAACATGCCCAGCCAACATTCTCATCCCATGCCACCACCTGCTTGAAGGAATCCAAACACCAACATACTCAGTCGTAAAAGACGAAGACATGTGGTGCGTCAAGGTAACAAAGAATGAGTTCATCGAATCATCATACAACTATGATGTCTTCGTCAAAGCTCTTGAAAGCAAATACCATGTAACAATCGGTAGCTTGCTGGACTGTGTTGAAAAACCATCTACACGCAGTATCACACCAACCCTATGGACGGCCATGCGTAACTTTGTCAACAACGACCAAGAAATGCAACGTATTCTCTCAGGCTACATCACATTCAACCTGACACCTCTACCACCCAAAGTTGAAATTATCAACGACTGGCTCGACAACAATGCCACAGTAACCATCAATAACCCATTCGCCTCAAACGAAGGTGTTACATTCGCTGTGCACAACATTGGCGCCATCACAACAACTGAAGGTGAATTTATCGTAAATGCAGCCAACAAACAGCTCAATAACGGTACAGGAGTCACAGGTGCAATTTTTGCAGCCCATGATAAAGAACTCAAGCTCACACAAGCAATCAAGGCCCTTCCAACATACGGCGCTTCAGACAAACTGGAATCACATCAACATGTAGTCCAAACCATCATCAAGAACAACAATTCAACACATGCAATCAACATTCTGCATGCAGCTGCACCAATTAAGGTGAAGTGTACTTCAAAAAATCCTGAAGTCCTCTTGGCCCATAATGAGACAGCTCAATCAGAACTGAAAGAAACATACAAAGCAATTGTTGACTATGCCCAACTAAACAAGCTCACCCACATCTACCTTCCACTCTTCGGTGCAGGTGCGTATGGACATAAACCTCTTGATTCACTTGAAGCCTTCCTTGACGCTATGCGAAACCGGTCCCCACAGTCAACCACACAGTACACCCTCCTCCTCTCAGACCCTGTCAAACCCCTGGACAATCCATCATTCTCCTATGAATTCCTCAACCTGCTCGTAACAAACCTGAACATCAACAAACAATTCGCCCAACTAATTGTAAACAAGTACCACAACACATGTGCACTCCAATCAGCTATCCAAATGAACACAACAACAGACACCCACAATTTCCTCGCAACATTCATCTACCTGCTATACACAATGCCATACTCAATGAACACATTCAGACAAACACACACACCAGAAGAACCATTCACACCCGGAAAAATGGTAACAGTAGTGGATACAACAATTGCATTCCTCACAACCCTTGACATCCTCCCACCCTGTGGACAACCATGCGGATATCTACCACCATCAATCACCAAAGATGGGGAATACATCTGTGCCTGCCAGAAAACATCAAACTGGTCACTACCATTTCACTTTTATAATGCAAGATACAACAAAGTCTACCACACTGGACTCAACAACATCCTCACACACAAACACTCAGCATTCCACAAAAGCAGAAACGCAGCCCATTTCATCGCTAAAACAGGCCCATCCACAAGTTCATACCCTGTATACATGGCACCAGTCCCAGAAATTCTAGCCTACAATGCCTCATACAGAGACTCCTGCCAAGACAATGCCATTGAAGAACAATCAGACTCTCAAGCATCTCAATCACCATCATCACCAGTCACAATTCCAGTATCCCTGCCAACAGCATCCCCAGCATCATCAGTTAAATCAGCTTTAAGATCAGACATCCCAATCACAACAGACCAACAATCCACAACATCTGCATCAATCTCAACAGCAACAACAGCTTCAACAATCCCAACAGCACCACTCACATCATCAGACTCAAACACATCTGTAGTGACATCACTCTACGGAAACATGGAAGAATTAACATACCTCGACGCTTCTGGTACTTCCCAGGATTTCATCCTCAGTGAAACAACACCATTCATTGCCCACATCTACCACAATAATGAAGCAACATTCATACCACCAGGATACCAACTGTTAGACACAAACACCAATGACCCAATTGAAATGTACATCACACCACCCCGCCCAATCGACGGTTCTCCAATGATCTCACTTGCCTCAACAGCCTCAACAACACCAATGACATACCCCCTGCTCAGCATCAGGCTTACAACTGAAGAATTAACATCATTCTTCAAGACAAAGACAGACAAATTCCACCTCATCTCACACAAAAGCTGTCTCACAGTACACCTTTTCGACTCACCAACATTGAACTCCATTGCAGCAGACAGTACATCAGACGCCCATCTGTACCAACAACACCTCAAGGACCTTTACACATTCTCAGACTGCTGTAGTATGTACACAAGAACAGAAGTATACAACTGTATTGAAGCTGATACACCACTCATCAGACAATCAGAACAGACCAAATTTCACCCAATCAACCTAGATACCCTAATCGAAATGGTAGCAACCTTCCCACCAATCGTCAAAAGATACAGTCAAACCACAACACCTGACTTCACAAACCTTACGGTCTACTTTGTATCAAATGGCGATATCATCACCACACCAACAGGAAGCACCTCAGAACAACCTCCACAGTTAAAAATCTTTCTGGATTACCAAACAAGTTCCAAATTCACAACTCTAGTCGACCTCACACTCCACGAACAGACAGAAGCCAACACAATCATCACATACCACCATGGTGAACATCAACTCCTCAAACCAAACCCATCGGCCTTCTACATTGAATTTCAAACATACTCATCCTTCTTCTCAAGATTCCAAACATTCTCCACAAACTTCTTCTGGACACTGTTCATCAACTTCCTCATCAATGTCAGATTCTGTATCACAGCAGACTCAGCATATTTCCATTGGCAAGGTAAACCCATTGAAACTACAAACTTAAATATCGTTTACAGTATCGGCAGATTAGACTTCGTTCTCTCCAAACACACTACTCCCTGGCTCACAAAACCAACCGACACACTCAATCCACTCACACTCATCAAGAACACACTTGTACAACCTATCGCAATCAACTTCCACGGTAGAATTAGACCACTCCAATCAACAAACACCAGATTCGGAGCCACACATACACCCACGAAATTACCAGTACACCTTCTGAACACATCACTAAGAACACACTATCTCTCACTCCTGTCACTGTTCCAATGCACATTCAGCGTATTCCTGGCATACATCGCCCTCCTCTACAGCTTCTCAGGACACGGTATTTTCACAGTTGTAGCCTATTTCACCATGCTATTTGCAAGATACTACATCACATCATTCATCAACTTCTGCACATCACAACTCACAGCAACACAAGTCACACAATGGTTCGCAGCTATCAAGGCCAAGTACACAGGTATCTATGAGTCATCCCAAGATCGTGTCCTCACAGTTAATGTCACAGGAACAAATGTACCATACATTGTCAAATACTCCACCATTCTGACAGTCACTATGTACGTCGCATTCATGGCCTTTGTCTGGACTGTATCAACATACGCAGCCCAATACACAGCCGGAGAACGTTATGATAGACCACCTTATCAAACAGTGTTCCAAAAGACGCTCAATGTACTCGGTTTAACAGAAACAGTAACATACTACTATCCATATGCATCACTTAATGAAGCATGCGCAGCATCTACATCAATCCTCTGCCGTCTCGGATCCCCCTTCAACTTTCACTACCCTTCAGACTACACACAAGTAAGAACAGTGCAAACAGACACATCATCACCATTCTGGCTGTTTATCATCTTCATGCCACCCTCATTCCTCTTCATCGTCCTCCCATGGTTGATCCTCTGCACAATTACACCAACAGTGTCAATTGCCCAGCTCCTCGTACCATCCATCATCTTGAACGCAACCATCGTCTTCATCTACATCAGAAGAAAGTTCACAGGACATTGTTGTGGACCTCACACATGCATTAAACACGCTGATATCTCCAGATCCCTGCAATTCAGACCAACATCTCAAATCCAACACAGTCTCACATTTTGCGGAACCCTGTGTGCCAAACACAACTGGTATTGTAATAACTCTGATTCACCAACCCACACACTTGGTATTCAACTTGCCCAACTGATTGAAACAACATACAAGCTCCAACCAGGAACAATCAAACCAGACTCATCCTACACACACACAACAGAAACAGCAACACTCCCAATCATGAAAGTATCAACAACATCCACAGATTTCACAACATCAGAACCCAACACAACAGTAGAACATCTGCACCTTCAAGTCATTGCCCACGTAACAGGTACACGTATCTCAATTGAATCCTCATCCAACAAGGTACAACAACAGAACACACAACACACACGTCTCACCAACAAACCAGTTACAGGATTCATGCACACCACACTCCTTCAGAAACTCAAACGCCAACACAAAGATGAGTTATCCTCATACCTTTGCAATTTCGTTCCATCAGACAACAAGAAAGATTGTATCCTGCCCCACTCTGTAGTACACATGACACTCACTGAAAACCAACGTACATTCTTGCTCAAGAACTTCACATTCTCAACAAATGTCACAGTAGACCCCACAACAACAGGTTTCATTCCATCATCACTGAACATCAGCACACTCCCACACAAACATTTCATGATCAACGTAATTGAATCAGCCATGCTCGCCAAACTTCCCAAAGAAGTTCAAGACACCCTCCGCACCACACATTTGGAAACTACCACCCTGGAACGCCAAGCTATGTCACTCACAACACAAGCCATCCTCACAACATTTGCCCTTATCATGGCAACATTCGTAGTAGCATTCCTCGCCTTCTTCTCAACAGCTCAAGTCGGTAAAACACCATATGCAGGTCTCAACCCAACAATGGTCGGAAATGTCAACGCAGAACCATACATTCAACCTACAACCCTGGAAAACTCAATCCTCATCCCACTCCACGGAGCATCAAAGGTTTGCTGGCGAGCTCAAAACGGTACACTATTCTTTACAGATGCCATTCCAACAACAGAATGTGCACGTGCCGCAGTTCCATACATCGGATACAAATCAGAGTTCACACAAACATGTGCATCCTCCAACCTCAGATACCCATTCACAGTCTATCTTGGATCCATCAAAGTAATGTACCTTCGCGACGGAATTTCATACCTCACATCAACACTGTCACACAATTCCAACACCAAGAAACTCTGTGTACAAGTCGGTTCCAACGCCGTACGTTGTGCATCTGTCCTACCAACTGGTGCCTCATCCAATGTCGCAGCCCTGCTAATGGCCTCAGTCGTTGTCATCTCAATGGTCCTGTTCTATCTGTACTTGCTCCAAATCTTCAAGTTTTACACCAACAGCGTAATCATGTCATTTGTCATCCAACTCCTCACCCTTCTCGCAACAACAGTCTCAACACCACTCGCAGTAACAGTCCAACTCTTTGTCATCACATACGGTTACACCAACTGGATCCTCCTCACACTCTCACTCCTCAATCTAACAGTACTCCTATCAACACCAGTCGGAATCACCTTTGTAGTAATCTACGGCTTATACAAAGCATACACACTGTTCACATCATCAGGACAAGGCTGTGTATACAACGAAGGTGGCACCATCAGATTTTCAGGTTCATTCGAACAAGTAGCAAACTCAACATTCCCCTTGACCAATGCATCATGTGTCCAACTCCTCTCAGATCTCGGAATCACATACCAACAACTTAATGTCTACGCCTCATCAAGAGACCGTAATGTTAGACGTCTTGCGCAAGCCCTCCTCCACAGACAACTCGACTCAGCATCAGAATGCATTCTGTATGAAGGATGTTCCGGTAACACCATCACCAGACAAGCCCTCCAACGTATCAGACAAGCAGTCACAGTTGTTGTAACACCAGCATCGCAGAATCTGTGCAAGATCACATCTAACCAAGCCAATGGCATCGGTCTCTCATGTACAGGAACATTCTTCACATCAACAGAAATCATTACATGTGCTCATGGTATCGGAACATCAGATATCACCGCAGTCCACAAAGGCATCACATACGATTGTAAGGTCAAGTCCATTAACAATGACATCGCCATCCTCATCACAACCACAGTCAACCTCTCAGTACAAAACATCAAGCTAGACTCATCCTTCTCCCAGAAATCAGACAATTACCAAAGAAATTTCGTCCAATTCGTCTCATTCGTCGACCAACAAAACTCAGACGCAGTTACAATTAACAACACAGTTATGCTCCCATCAGGACATTTTTTCGCAATTGGCACAGAAGCAGGTGAATCCGGTTCTCCCTACACACTGAACGGTAACATCATCGGTATCCATTACGGTATTGACAATGCAGGAAGTTGGATGCTCGCCAGTAGACCTGACGGTTCATTTTACGTTCCAGCAACTCAACATGGTAACTCCGCTAAGGTAACATTCTCAACAGACGCTTTTGCCCAACAATTCCCTGCCATTGTCACCAACAAAACATCAGACCAACTTGTGAACGAGATCGCAGCAACTAACAACACTGCCTTTGAACTTGATACAACAGACGTATCCCATCTGTCTAACCTCCTGAAACACCTCAAGAACAACAATGAAACACCTAAATCACTCTCTGACTACCTCCCAGTAGCACCAGTAACACAGCAAACATCTGTCACAGTAGGACAAACACTCACATCACCAGTTAACAACATGCAAACAGCGTTATACACACTAATGCTTGTATCAGAAGTCATCACATACATCCTCACACCAAACTCAGACCTCTCAGTACTGATCTCCATGTTTGTCACATCCGCATTCCTCAAATTCGGCGCCTCAAAACTCTTCTACAACACAGAAATGCTCAGAAACACAATCACAACATTCGTAGTCTACAGATACACCACACTGCTCATCGCCCTCGTATTCTCACAATACTATCTGCACATACTATCATATGCCCTCAAACTGAACACATTAGTCTTAACAGTAATTGCACTCACATTCCTAGTCACACCACTAGTCCTTCTCACAATCAGAAGAGTCTACTACTACTCCCAGAACTACCTCATCTCATGCGTGTTCATCATCAGTTGTTTCGCATCACACACATACACACTCTACATCCTCACAGACACCACAGTTGATTTCCAAACATTCATCATCTCAGAACCAATCTTCTCAACCCTCCTATGCAACCTCTTCATCGGATTCACACTCATCTCTGTCGTCCCCAACCCACTGTATGTATGCGTCGTCTTCATGTACATCTTGCTCGACTGTGAAGCTCTCGGTTTCATTGTCACCTGTTTCATGGCTTCATATCTCTGCCCTAAACCCCTCAGATCCCTCACAACATTCCTCTGTACAGACACACTCGTACTCACAGCCCCAGCATACCTCCACTGGTATGGTGCCAAAGGAACACAAAGAGAATACTCTGTTATTTACGCAGTTTTCGACTCTATCCTCACACCTGAAACAACAATCCAAATTCCAGTTACCATCATGGAAGGCATTGAACAACAAGTCAAATTCATCTTCGCAGTCCCAAAGTCTGCTAACATCCAAGATGAAGAGGAAGCTTACGTCGAGTATAACCAAAACTCCGACATTAAGGACCTTGCCATCAAGAACGAAGAAAAAGTTTGCACAATTACAGGTATGTTTCGTAAAACACGTACAATTAAAGGCACCCTCATGGAATCTTTCTACCCAAGACACCAACCAGACAGTTACATCCTCAACCAAGTCGTTCGTCACAACTACGTCCTTGCCCATGACCCTGAAACAATCATTCTCACCACAGTCAACCCAACACACCTGGAATCAGAACCATTTCAAACAATTGTCAAAAAGGTCCGTAAACTCCACGCCCTGTACCAAGAAATCTCAGAACAATCCAGTGACGACACAGAATTGTGCCACGCTTACATCTTGGCCCTCATCAAATCAACAGTCCTTGAAGCACAAATGCCAACAGAAAAGATCAACTTCGTCTCATCACAAACAATGTTAAGTCCAGCCATGATCCTCATTTTCGCTGAAGCATACCAAATTCTCACAGAATCCCGCTCATTCACAAACCACATCACACCACAATCTGATATTGGCTCCATGCAAACAACACTCGCATCACTTGCAGAAATGGATACTGACGAAATGACACCACAAGAACGTAAAATCCACATCAAACGCATGAATGTTCTCAAGCAAGAAATTGCCAAAATGGAATCCGCTAGTCTCAAGCTAGAGAAATTCCTGGACAACATGCACAAAGCCGAAATCTCAAAGCGCGGCAAAGAAGACATTTTACTCAAAGTGTCCAACATGTTGCGTCTGCATCTTAACAAAGTTGCAAACGCTGCGCATTGTACGATTCAAACACCATCAGCAGGACTAATCACCCTCGCTTCCGCTTTTGATGTCCATTCACTTTGTGTCACACAACATTCTGAATCAGTCCTCATCCAAACACCAGATGATGATACATTTCTCGTCTATGTAGATGGCCAAATTTACACATGCTACAACCCAACAGATATAACAGGTAAGAAATTAGTCCCAATTAATGTAATGTCCCCAGATAACGTCCAGTTTCCAACATACCCAGTCGTATTCTCCCTCTCCAAACAAGATTATGCAGAAGAAATCACAGAACAGAACAACATCGGTTACACAGAACGCACACATAACTTCAAACTAAAAGAACTAGCCTCAGGCCTCGCAGTCACACTTGACGGGCTTGTAGTAGTAACAGAAACAAAAGAACTAGCCACAGCATTTAAAATTGGCCAACGGTATTTCAAATTCCTCAACACCAACAAAACACCTGTAGCACGCAACAACACACATGCAATTATCCAACTTCTCAGAAACAACATCTCACAACAAGCAGTTGTACGAATTGGTGGTTCCAGAGTGTCAAATGACCACATAGCCATCTCCCAAGTACCAGTCCAAACAATTGGTTACCTAACCTATGCAGGTATTTCTGTGTGCAGACAATGTGCCACCAAACAAGACCACACATGTCAGTATGCAGGATACTTTGTTCAAATTCCACGCGAACACGTTTCAAACATTTTCAACCTTACAGACACACCACCATGCCTACATAACAAGTTCACATGCACAACATGTCAACCATTGCAACAACAATCAAAAACACAGCAGCCGCCTTTAAACTGGTGGGGCAGTGTCTAG
Protein
MSILFGNRQANATKRSDMASVARAVYEVDLISTKYARRTQERLAHNKHAKPSYPSVFFGRRMKAVKEPTFTPSTLFFEEATLPKVLASKAKPDTGIKTRRVYVADSLTINGHTYPIVGHFVEMAVSKKEAFPIQPKRVKPKPLMAKPIPNIRRTFLTPEERTNTPTTPTTTTTTPFVAGETAGPTIEYTPTSIDLPFAMPTVKQIKENAHTILREQDDCLRFAQTALFKHLGTVTHTTPNHATTFQVKGRTSLLTFEWRKTTQSPLTDGHFYLQTANNHAELMQPVEGKLTTIFTTTIQQGTTHSLHLIKQESARTLKTRKPLKLVTYKQETPTTTITPQSLKKTITYIPGSFCINVAEPTLQSVMRRQPLTPTPNDALLQIYHKLGCTTKSPNHASTFELFGNTYTWYPVQHTNNLLHKDPNRRFFLHITGQTPQLLIRTERKTFLTLQDEVTYISGKLFVMNHAPIQGEYKTQTAEWVGSYNMAKTPKAIKPAKTVEYINTTPCHKPATMPAPITYRQCPYTWTLHEPSISKVQRNLFHIPKTATNCLDRIQKALFPEIVTSNQHFPIGFTIQTDTTMQSYEWAILCKKVTRTYYLAVQNHHATLWYKCAQVYMCLSDDIAPTTELQGSVYILNKVTDPGFYQNTRQWCGSNDDLHEPKHLIKNLANGDVNNIAHCSLTPWTTTPLVYSTQKNKLTRKLIHYYNATYTVQVPKENPNAQPSTMKCAYKAYIDLATPTELQIHLDLEIQGKLYSQTAQKKGSKFNKLDIPTFGDILKGTLYVFSSKVLLYEQPKRCTSVCFHLPNNAQSFFFNTETIQTFEDLFARISSEEVEDNLVLIKGFVPCLGAIYITKDLKFIQPELKEDFKHPTTYYTFTTTVDPEQVLYSLHPSFTDIVPPHGFPYYTFAKLNNHIDAWNITDDQADTLAEAQPIIFQWPTEEATITTPYKVLHYEHLEGLDYISLSSFNTVECPEETQSAHDSSSESESEDEELPAHPLSNAPSQASLSSVASTAPPTSPTSSPTPSPTPLQQQVGLKGKEVPVGGWVLVSEEETPSEEVDSPKLLPNEVPLSFDFDLPIEPITRPISPELQQPILTHYEHPTSPTPSVEIEIDFGSYENLTLQTEETVTTEVQPEPTPAPTPEPTIVTETVQETPVPTETTQESTPESTPESTPEPTPESTSESTLEPEHVATPSQSPTHITVTEITHEPETPDSWSERYDSTSNIPEVFNQLSFGSTDSVKITTPKTETPDEPQQPTVETVSAAQQLLQIVQTATPDIAQLMSELPPYRLICIGSYCPILAENISKQLPTAVTTPTDADIPTVIFNVSEETMDTVINTVKTKHQANHLTFSLTTIIALDVPKDKSLPLQQIYDKLTQQDYNTDFIYESHHRQPKESLTHASVLSAYTASYKTTAIKSIADNAVVLDIGYGKGNDGPRYAVRPLTVTGIDTAARMLAIADQNKPENVTLVKQGFFTHITKTSNTYTHVIAFNSLHYPLASSHPDTLVQRLPTCPANILIPCHHLLEGIQTPTYSVVKDEDMWCVKVTKNEFIESSYNYDVFVKALESKYHVTIGSLLDCVEKPSTRSITPTLWTAMRNFVNNDQEMQRILSGYITFNLTPLPPKVEIINDWLDNNATVTINNPFASNEGVTFAVHNIGAITTTEGEFIVNAANKQLNNGTGVTGAIFAAHDKELKLTQAIKALPTYGASDKLESHQHVVQTIIKNNNSTHAINILHAAAPIKVKCTSKNPEVLLAHNETAQSELKETYKAIVDYAQLNKLTHIYLPLFGAGAYGHKPLDSLEAFLDAMRNRSPQSTTQYTLLLSDPVKPLDNPSFSYEFLNLLVTNLNINKQFAQLIVNKYHNTCALQSAIQMNTTTDTHNFLATFIYLLYTMPYSMNTFRQTHTPEEPFTPGKMVTVVDTTIAFLTTLDILPPCGQPCGYLPPSITKDGEYICACQKTSNWSLPFHFYNARYNKVYHTGLNNILTHKHSAFHKSRNAAHFIAKTGPSTSSYPVYMAPVPEILAYNASYRDSCQDNAIEEQSDSQASQSPSSPVTIPVSLPTASPASSVKSALRSDIPITTDQQSTTSASISTATTASTIPTAPLTSSDSNTSVVTSLYGNMEELTYLDASGTSQDFILSETTPFIAHIYHNNEATFIPPGYQLLDTNTNDPIEMYITPPRPIDGSPMISLASTASTTPMTYPLLSIRLTTEELTSFFKTKTDKFHLISHKSCLTVHLFDSPTLNSIAADSTSDAHLYQQHLKDLYTFSDCCSMYTRTEVYNCIEADTPLIRQSEQTKFHPINLDTLIEMVATFPPIVKRYSQTTTPDFTNLTVYFVSNGDIITTPTGSTSEQPPQLKIFLDYQTSSKFTTLVDLTLHEQTEANTIITYHHGEHQLLKPNPSAFYIEFQTYSSFFSRFQTFSTNFFWTLFINFLINVRFCITADSAYFHWQGKPIETTNLNIVYSIGRLDFVLSKHTTPWLTKPTDTLNPLTLIKNTLVQPIAINFHGRIRPLQSTNTRFGATHTPTKLPVHLLNTSLRTHYLSLLSLFQCTFSVFLAYIALLYSFSGHGIFTVVAYFTMLFARYYITSFINFCTSQLTATQVTQWFAAIKAKYTGIYESSQDRVLTVNVTGTNVPYIVKYSTILTVTMYVAFMAFVWTVSTYAAQYTAGERYDRPPYQTVFQKTLNVLGLTETVTYYYPYASLNEACAASTSILCRLGSPFNFHYPSDYTQVRTVQTDTSSPFWLFIIFMPPSFLFIVLPWLILCTITPTVSIAQLLVPSIILNATIVFIYIRRKFTGHCCGPHTCIKHADISRSLQFRPTSQIQHSLTFCGTLCAKHNWYCNNSDSPTHTLGIQLAQLIETTYKLQPGTIKPDSSYTHTTETATLPIMKVSTTSTDFTTSEPNTTVEHLHLQVIAHVTGTRISIESSSNKVQQQNTQHTRLTNKPVTGFMHTTLLQKLKRQHKDELSSYLCNFVPSDNKKDCILPHSVVHMTLTENQRTFLLKNFTFSTNVTVDPTTTGFIPSSLNISTLPHKHFMINVIESAMLAKLPKEVQDTLRTTHLETTTLERQAMSLTTQAILTTFALIMATFVVAFLAFFSTAQVGKTPYAGLNPTMVGNVNAEPYIQPTTLENSILIPLHGASKVCWRAQNGTLFFTDAIPTTECARAAVPYIGYKSEFTQTCASSNLRYPFTVYLGSIKVMYLRDGISYLTSTLSHNSNTKKLCVQVGSNAVRCASVLPTGASSNVAALLMASVVVISMVLFYLYLLQIFKFYTNSVIMSFVIQLLTLLATTVSTPLAVTVQLFVITYGYTNWILLTLSLLNLTVLLSTPVGITFVVIYGLYKAYTLFTSSGQGCVYNEGGTIRFSGSFEQVANSTFPLTNASCVQLLSDLGITYQQLNVYASSRDRNVRRLAQALLHRQLDSASECILYEGCSGNTITRQALQRIRQAVTVVVTPASQNLCKITSNQANGIGLSCTGTFFTSTEIITCAHGIGTSDITAVHKGITYDCKVKSINNDIAILITTTVNLSVQNIKLDSSFSQKSDNYQRNFVQFVSFVDQQNSDAVTINNTVMLPSGHFFAIGTEAGESGSPYTLNGNIIGIHYGIDNAGSWMLASRPDGSFYVPATQHGNSAKVTFSTDAFAQQFPAIVTNKTSDQLVNEIAATNNTAFELDTTDVSHLSNLLKHLKNNNETPKSLSDYLPVAPVTQQTSVTVGQTLTSPVNNMQTALYTLMLVSEVITYILTPNSDLSVLISMFVTSAFLKFGASKLFYNTEMLRNTITTFVVYRYTTLLIALVFSQYYLHILSYALKLNTLVLTVIALTFLVTPLVLLTIRRVYYYSQNYLISCVFIISCFASHTYTLYILTDTTVDFQTFIISEPIFSTLLCNLFIGFTLISVVPNPLYVCVVFMYILLDCEALGFIVTCFMASYLCPKPLRSLTTFLCTDTLVLTAPAYLHWYGAKGTQREYSVIYAVFDSILTPETTIQIPVTIMEGIEQQVKFIFAVPKSANIQDEEEAYVEYNQNSDIKDLAIKNEEKVCTITGMFRKTRTIKGTLMESFYPRHQPDSYILNQVVRHNYVLAHDPETIILTTVNPTHLESEPFQTIVKKVRKLHALYQEISEQSSDDTELCHAYILALIKSTVLEAQMPTEKINFVSSQTMLSPAMILIFAEAYQILTESRSFTNHITPQSDIGSMQTTLASLAEMDTDEMTPQERKIHIKRMNVLKQEIAKMESASLKLEKFLDNMHKAEISKRGKEDILLKVSNMLRLHLNKVANAAHCTIQTPSAGLITLASAFDVHSLCVTQHSESVLIQTPDDDTFLVYVDGQIYTCYNPTDITGKKLVPINVMSPDNVQFPTYPVVFSLSKQDYAEEITEQNNIGYTERTHNFKLKELASGLAVTLDGLVVVTETKELATAFKIGQRYFKFLNTNKTPVARNNTHAIIQLLRNNISQQAVVRIGGSRVSNDHIAISQVPVQTIGYLTYAGISVCRQCATKQDHTCQYAGYFVQIPREHVSNIFNLTDTPPCLHNKFTCTTCQPLQQQSKTQQPPLNWWGSV
Summary
Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Similarity
Belongs to the coronaviruses polyprotein 1ab family.
Uniprot
Pubmed
EMBL
Proteomes
Pfam
Interpro
IPR001205
RNA-dir_pol_C
IPR027352 CV_ZBD
IPR036333 NSP10_sf
IPR032505 Corona_NSP4_C
IPR009469 RNA_pol_N_coronovir
IPR008740 Peptidase_C30
IPR018995 RNA_synth_NSP10_coronavirus
IPR029063 SAM-dependent_MTases
IPR041679 DNA2/NAM7-like_AAA
IPR014822 NSP9
IPR009003 Peptidase_S1_PA
IPR037227 EndoU-like
IPR038123 NSP4_C_sf
IPR037230 NSP8_sf
IPR027417 P-loop_NTPase
IPR009466 NSP11
IPR017896 4Fe4S_Fe-S-bd
IPR027351 (+)RNA_virus_helicase_core_dom
IPR007094 RNA-dir_pol_PSvirus
IPR036499 NSP9_sf
IPR014829 NSP8
IPR002589 Macro_dom
IPR009461 Coronavirus_NSP16
IPR042515 Nsp15_N
IPR014827 Viral_protease
IPR027352 CV_ZBD
IPR036333 NSP10_sf
IPR032505 Corona_NSP4_C
IPR009469 RNA_pol_N_coronovir
IPR008740 Peptidase_C30
IPR018995 RNA_synth_NSP10_coronavirus
IPR029063 SAM-dependent_MTases
IPR041679 DNA2/NAM7-like_AAA
IPR014822 NSP9
IPR009003 Peptidase_S1_PA
IPR037227 EndoU-like
IPR038123 NSP4_C_sf
IPR037230 NSP8_sf
IPR027417 P-loop_NTPase
IPR009466 NSP11
IPR017896 4Fe4S_Fe-S-bd
IPR027351 (+)RNA_virus_helicase_core_dom
IPR007094 RNA-dir_pol_PSvirus
IPR036499 NSP9_sf
IPR014829 NSP8
IPR002589 Macro_dom
IPR009461 Coronavirus_NSP16
IPR042515 Nsp15_N
IPR014827 Viral_protease
SUPFAM
Gene 3D
ProteinModelPortal
PDB
5YNQ
E-value=0.002 Score=42.0 Identity=42.19%
Cov(Q)=1.41% Cov(P)=45.71%
3D Structure
Ontologies
GO
GO:0005524 F:ATP binding
GO:0019082 P:viral protein processing
GO:0008270 F:zinc ion binding
GO:0016896 F:exoribonuclease activity, producing 5'-phosphomonoesters
GO:0016021 C:integral component of membrane
GO:0044165 C:host cell endoplasmic reticulum
GO:0033644 C:host cell membrane
GO:0039694 P:viral RNA genome replication
GO:0006351 P:transcription, DNA-templated
GO:0003723 F:RNA binding
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0008242 F:omega peptidase activity
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0032259 P:methylation
GO:0008168 F:methyltransferase activity
GO:0004197 F:cysteine-type endopeptidase activity
GO:0003724 F:RNA helicase activity
GO:0039520 P:induction by virus of host autophagy
GO:0019082 P:viral protein processing
GO:0008270 F:zinc ion binding
GO:0016896 F:exoribonuclease activity, producing 5'-phosphomonoesters
GO:0016021 C:integral component of membrane
GO:0044165 C:host cell endoplasmic reticulum
GO:0033644 C:host cell membrane
GO:0039694 P:viral RNA genome replication
GO:0006351 P:transcription, DNA-templated
GO:0003723 F:RNA binding
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0008242 F:omega peptidase activity
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0032259 P:methylation
GO:0008168 F:methyltransferase activity
GO:0004197 F:cysteine-type endopeptidase activity
GO:0003724 F:RNA helicase activity
GO:0039520 P:induction by virus of host autophagy
Subcellular Location
From MSLVP
Capsid
From Uniprot
Host cytoplasm
Host perinuclear region
Host endoplasmic reticulum
Host membrane
Host perinuclear region
Host endoplasmic reticulum
Host membrane
Topology
Length:
4555
Number of predicted TMHs:
16
Exp number of AAs in TMHs:
378.91537
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.00072
outside
1 - 2541
TMhelix
2542 - 2564
inside
2565 - 2570
TMhelix
2571 - 2593
outside
2594 - 2642
TMhelix
2643 - 2665
inside
2666 - 2743
TMhelix
2744 - 2766
outside
2767 - 2770
TMhelix
2771 - 2793
inside
2794 - 3079
TMhelix
3080 - 3102
outside
3103 - 3245
TMhelix
3246 - 3268
inside
3269 - 3288
TMhelix
3289 - 3311
outside
3312 - 3320
TMhelix
3321 - 3343
inside
3344 - 3726
TMhelix
3727 - 3744
outside
3745 - 3748
TMhelix
3749 - 3771
inside
3772 - 3782
TMhelix
3783 - 3805
outside
3806 - 3808
TMhelix
3809 - 3831
inside
3832 - 3842
TMhelix
3843 - 3865
outside
3866 - 3879
TMhelix
3880 - 3902
inside
3903 - 3906
TMhelix
3907 - 3929
outside
3930 - 4555
