CoVDB Coronavirus Database (v3)   
Strain
shrimp_NC_010306 (Region: Australia;  Strain: Gill-associated virus, complete genome.;  Date: 1996)
Gene
polyprotein precursor
Description
Annotated in NCBI,  polyprotein precursor
Location
NC_010306(+):20675-25597
GenBank Accession
YP_001661455.1
 

Sequence

CDS
ATGCAATGTTCGCGATCATCCACCATGCTCTCCTTCTCCTCACACTTCCCAGCCTCATTATCTTTTACTGGGCTGCGGGGTATATTTCTGATCTTCCTCTTGTCTTCAGCACTCTTTGGATCTGGGGCTCATGGCTTTGCACTACAATTTGCTACTCCCTCACGTTCTCTGGACGCAGGCGCAATAAGGACAAATTCTACTATTCTATCAACGTGCAACAACACAATCCATACAGTAAAAGAATCATGTCATCTAAGCTCGCTTGAGTCTTCGGTGAACTGTTTCAATAATGAACACACACATGATACCTCAGCTCCAGGTTCACATATCATCTACACAGTTGGTTTTGCATATCTAAAAACCGATTATGAGTGTAAGGAAGGATATCCACCTGCCCACACCGTGCAACGATCCTTTCTCACTATCCTCTATCTCATTATCTGTTCTCTCCTTGCCTATATCTTCACTAAGCTAACTCCTATCGCTAAATCCTTCATCGCTTCATGCTTCCTAACTGAACACATCTTGGAAACAACTGAAACTGAAAAGGGACAGCTAACCATAGCTCACGATCGGCATAGACTCGCGCCAACAAGTTGGTATTCTATCTTCAACACATCACTTAATTTCCTTCTAATTATCCTCTTCATACTACTCTGTCTTCTCATCACACCCACGTTTGCTAAGGAGCCTGAAACATTATTTTCAAGCAATCACACTGAACCTTACGACTGCATGTTTTGGGCTGCAAATGGCGACTGTACATGTAACGCCACAAATTGCGATTGGAGTGAGCTAGTCCAACAGCTCTGCCCACACACATGCAATTCAGGCACATCACCACCACCACCACCCACTACAGCCCAAAATTCAACATCTCCATGCTCCGCAGACGATTCAACCGGATGCTTTAAATATCTTTATGATTACAGCGAATCTAAATTAACACACGCTATCAAATACGTCCATTCAATTGGCTCAATCTCAGTTAGATCCACCACAATAACATCTGATCAACTCGAATCCCTCTCCATAGATGAGGCCAGATATTCAGAAATTGCAAAATTATATAGAATCGGTAATAGCACATCAGCATTAGGCTGTGTTTACAACCCAGCTTCATATTACCTTCATGGCGATGCAATCCCCATCACCTGTCCGCCAACACCCCGGATCTTAGGTACAACATATCGCCATAGCATAGGAAAGCAAATTCTTTATAATAATAAAATGGTTAATGTCACTGTTGATCAGCGCTGTAAATCACATTCAGAAAATTGTTGGGCTTATTATAATAAAGTTTCAAAAGGTATCTTCATCCAATTTCATCCAACTTATGCACACCAATATCATAAGAAAACGCTGAAGCCCACTACACTAATCACACCTTTCTACCCTCCTCGTGATACACGTACTCTCGCTACACATCTTGGTCCTAGAGTTATCCGTAATGAGGGCGATTATCAGATATTTTTAGAACCGGGTGGGCTTGGCAGAACATATTTTGATGGATATCCCTACAATGAAATTTATGCATCCACACGTGCCGATTGTGAATATAACACGATGAGCAACGCTAATAAGGTCGGAATTAATCTCGGTGATGACATTTTGCACGAGACAATCCCAACACCTAGTGGATACGCTGTCAGTGTGGTCACTTGTGGTACAACTTTCACATATATGAAATTAGATAATTTAGTTAAATTCCAATGGGAGCAAGTTCAATACACCGATATAGATGATATACCTGCTGGCTTTCGTGACCCATATGACTTTTCCGTCGAGACCCCCAGCGGGCCTGTTACTATCAGTGTCCTCGAAGAGTATCACGACGGTGACTCCATTCAGGAAACAGCACCAAAGCGGTTCTTCATCTATTATCGTGTAATGACAGCTCGCCTTACCCCATCCCAAATACAATATCTCAACGAATCAATCCATCAAACAGGACTTTGGTCAGCTGCATATCCTTTCCAAAACTGTTACGTCACTAGACCTGAATTCGCAAAAACTACACATCCATATTCATTCGCACTCTCCTATAGTGACTTCTCCATCACAGCTGGCCCACTCGTTGAATGTAACGATTGGAACATTCAAATGCATCTGCCTTTAGCATCATCAGGTTCAGTTAAGCGTACCTGGGCTGGTGAATTTAGACATCTCCCCCACTTTCTAACCAAACGTGGATTTTATCCCCTAGAACCAGTAACTGAAAATGCAATTGATTATTTAATAGTTGAATATAATGCCCACGCATCACGCTACTCCCATCAAGCCACATACCATCAATTCGGTCATCCTGTTGCCAAGGCTCAAACAATGCCCGGCGTTTGTCCAACACCTCGCTCACTACGCTACAAAGGTCTCTGCTATGAGGTCGACTGGTCAGTTCGCTCACCAGCTCCACCAATTAGCGGTTACCCTGATATCGGCACACACACATCCGGCTACATTTTCCAAAGATACGATTACTATCGATTCAAACCTAAATTTGGCAATGGATTATACCTTGGTAAAGTCTCAGCTGCAGCATCTATCGGTACGTATTCAAAATGTGGTAAAGCACAATCAATTGGTCCTTTCCATGATCATGGAATTATCACTGATATGGGCACTCCAGTTTATGACAGTATCTGTGATTCTGCAGCTTATACAATACCTGTGGTTAAATACAACAGCCCCTATTCCCTTGGTATTCCCGGTGTCACATGTAACATCAATGACACAACCCTAATATGTGGAACCAACAGCACTTTCAGATTTTCCATCTGTTCACACAAAATCCCATATGATGGCCCACACTCAGTCACATGCATTGACTCAGTAGATAATAAAGTCTATCTCACAAAAGAGCAGGGGCATTCATATTACATCGCTGGTGATCCAGGTTTTTTACACCTCTCACACAATAAGCATACCCCATATAATAGTATCCTTAAATCCCAATTCGACCTACTACATTTCTCCTACATCTATCAGGCTATTGCAGTATTACTTGGCAGTATCGGATACATTCTTCTTGCACTTTATCTACTACTCTTTATTCTCACAACCATCTGGGCCAACATCAAATACATATTCTACACTAAGACTACCTATCTCGGCTACACCATTCCAGAGCGATTTATGGCTGGCAAGTCAGGGTGTAAAATTTGTGGGCTTGATACCAAACACCTCAAAGTTCACGCCCGTCTTCACAAAATCTACATTCATAGCCCTATGCTTGGCCGGACATTCTTCCTCTGGTCCCCCATCTATATCATGGCATTATTCGCACTCCTAAGCCCTGCTTCGGCCTTAGCTCCCGGACAGGCGCGTGTTAGAGGTTCTCCCGCTACATTCAAATCAACCCCCGAGATTAAATCAACATCATGTTCTGGCAACCAGTGTCTCCTCGATCTTGAATATACTGGTGTCATTCCAATTTATGATGGTGCCCAATTTTCAGTTGACCTTAACATCGAAGGCTATCTCCCGGTCACAACTAGTTATGTAGTCCGTGATCCAAGTTACACCTCATCATGCGCTTATCTCTACACCTCTCTTCCACCTAAGCTCTGCGACGCTCGCATCAACTGGTCATGCCTCCACACCGGATCTTGCAAGAATAGTTCAGATTATCTTTTCAATCCTTTAGGTCAGCATACCTCAAACGATTATGTCGTCGCCAATCCATCCAATCCCCTCCAATGTGGCTTATGCCCCGTTTCAGCAGACTGCGACACCAGGTTTGCAGATTTCAATCACGGTTGCGCAACCATCAATGATGGCCACGCTGCTGGCGCCGCTTGGATTTCAGGGGACATCAACGGTGACATGATCGCAGCCTTTGAGTGTTCTATTAATAACATTGCATTCCAAATATGTGATCTCCAAACCAATGCCTGTACATCAATAACAACTGACTACAGAAATTATACAGCCGATTTTGAAACAATAAGCTTTAATATCGCTCATCCCCAGGTAGCAAAGACAACTTTCAAAGTTGGTGCGCTTTTTACCCAAGGCACGACATATCCTAAACATCTCTTTTATGACGTGCCCGGTAAATATGCCGCGCCTGCTGGATCATTCTTTAGTTATCAAGCTGAGACAGTTCCAACTGGTGACTTCTGCAATAACAACGCATGGATGTCGCCTGGCTTAGCAACAGCTGATATTAAATATGACGGATATCCAACTTTAGATTATAAATTAAATTTTGCAACAATCCAGCAAGCCATCCGTAGTTATGACCCACTTGGCGCTATAGTTCAATGTAATTATGATCAGGCATACATCTCAACAATCACATCCCGTCAGCAGCGATCGCTTAAATTAAATGGCGTTACATACAGCGATGAGGTTGATGCTCTATCGTATGGGCTGCTCCTTAATCCGCATCATTGCGATTTCGGAGCTGTTAACATACATTTTGCATATGCCGCCACCGCTCATGTCTCCATCATAGAAGGCGACCCTGACCAGCTTAAATTCAACTGTAAAGGCTGTCTTTTCACAAATAATCAAATGCAATGTTCCATCCAAGGCATAGATTCTCATTCATATCAAATCACTGATTCTCTCAACACTTTCGGCGCTTCCACTTGCTCTCACACTAAAGATTCTCACCTATGTAATTTCACTGCCTCGTCACCTGAGTTCACCCTTAGAGTTAACGGTAAACCAATCGCCATTACTGCAGTTGTTACGCAATGTGATGTCGGGGCTATCTCCGACACCATTGTGGGCGCTGCAGGAAATGACCGCTTCGGTACCTTCACCTCTTTTTCACTCGGTGGCATGACTTGGGATTATATCCTCAAATATATTCTCTATGGCATTGGCACACTCCTCCTTATCTTTTCTCTCTATTTCCTGCTACGGTTGCTTATCCACCTATGCACTACCATGAGAACGAAGGTTAAAAAGTCCTAG
Protein
MQCSRSSTMLSFSSHFPASLSFTGLRGIFLIFLLSSALFGSGAHGFALQFATPSRSLDAGAIRTNSTILSTCNNTIHTVKESCHLSSLESSVNCFNNEHTHDTSAPGSHIIYTVGFAYLKTDYECKEGYPPAHTVQRSFLTILYLIICSLLAYIFTKLTPIAKSFIASCFLTEHILETTETEKGQLTIAHDRHRLAPTSWYSIFNTSLNFLLIILFILLCLLITPTFAKEPETLFSSNHTEPYDCMFWAANGDCTCNATNCDWSELVQQLCPHTCNSGTSPPPPPTTAQNSTSPCSADDSTGCFKYLYDYSESKLTHAIKYVHSIGSISVRSTTITSDQLESLSIDEARYSEIAKLYRIGNSTSALGCVYNPASYYLHGDAIPITCPPTPRILGTTYRHSIGKQILYNNKMVNVTVDQRCKSHSENCWAYYNKVSKGIFIQFHPTYAHQYHKKTLKPTTLITPFYPPRDTRTLATHLGPRVIRNEGDYQIFLEPGGLGRTYFDGYPYNEIYASTRADCEYNTMSNANKVGINLGDDILHETIPTPSGYAVSVVTCGTTFTYMKLDNLVKFQWEQVQYTDIDDIPAGFRDPYDFSVETPSGPVTISVLEEYHDGDSIQETAPKRFFIYYRVMTARLTPSQIQYLNESIHQTGLWSAAYPFQNCYVTRPEFAKTTHPYSFALSYSDFSITAGPLVECNDWNIQMHLPLASSGSVKRTWAGEFRHLPHFLTKRGFYPLEPVTENAIDYLIVEYNAHASRYSHQATYHQFGHPVAKAQTMPGVCPTPRSLRYKGLCYEVDWSVRSPAPPISGYPDIGTHTSGYIFQRYDYYRFKPKFGNGLYLGKVSAAASIGTYSKCGKAQSIGPFHDHGIITDMGTPVYDSICDSAAYTIPVVKYNSPYSLGIPGVTCNINDTTLICGTNSTFRFSICSHKIPYDGPHSVTCIDSVDNKVYLTKEQGHSYYIAGDPGFLHLSHNKHTPYNSILKSQFDLLHFSYIYQAIAVLLGSIGYILLALYLLLFILTTIWANIKYIFYTKTTYLGYTIPERFMAGKSGCKICGLDTKHLKVHARLHKIYIHSPMLGRTFFLWSPIYIMALFALLSPASALAPGQARVRGSPATFKSTPEIKSTSCSGNQCLLDLEYTGVIPIYDGAQFSVDLNIEGYLPVTTSYVVRDPSYTSSCAYLYTSLPPKLCDARINWSCLHTGSCKNSSDYLFNPLGQHTSNDYVVANPSNPLQCGLCPVSADCDTRFADFNHGCATINDGHAAGAAWISGDINGDMIAAFECSINNIAFQICDLQTNACTSITTDYRNYTADFETISFNIAHPQVAKTTFKVGALFTQGTTYPKHLFYDVPGKYAAPAGSFFSYQAETVPTGDFCNNNAWMSPGLATADIKYDGYPTLDYKLNFATIQQAIRSYDPLGAIVQCNYDQAYISTITSRQQRSLKLNGVTYSDEVDALSYGLLLNPHHCDFGAVNIHFAYAATAHVSIIEGDPDQLKFNCKGCLFTNNQMQCSIQGIDSHSYQITDSLNTFGASTCSHTKDSHLCNFTASSPEFTLRVNGKPIAITAVVTQCDVGAISDTIVGAAGNDRFGTFTSFSLGGMTWDYILKYILYGIGTLLLIFSLYFLLRLLIHLCTTMRTKVKKS

Summary

Uniprot
A0A0U2KCJ7   Q8JNK9   B6SCR3   B6SCR1   A0A1S6GXF7   C6GFB0   + More
F2Q6W9   B3U1H7   F2Q6X3   A1Z0M2   B9UYP8   D7F2D6  
Pubmed
10399042    10811931    11907343    18768192    28044194    19409902    + More
12180709    12655087    16213055    18582978    20554800    19049843    20158577   
EMBL
KT316279    ALS03978.1    AF227196    AAK84670.1    EU785043    ACI49543.1    + More
EU785042    ACI49541.1    KX947267    AQS27934.1    FJ848673    ACS44769.1    FJ848674    KT316278    ACS44774.1    ALS03976.1    EU487200    ACA21301.1    FJ848675    ACS44778.1    EF156405    KT316282    ABM30183.1    ALS03982.1    FJ194949    ACM24270.1    FJ627274    ACU52717.1   
Proteomes
UP000000402    UP000281268   
ProteinModelPortal
A0A0U2KCJ7   Q8JNK9   B6SCR3   B6SCR1   A0A1S6GXF7   C6GFB0   + More
F2Q6W9   B3U1H7   F2Q6X3   A1Z0M2   B9UYP8   D7F2D6  

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1640
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
136.58163
Exp number, first 60 AAs:
22.28071
Total prob of N-in:
0.98947
POSSIBLE N-term signal
sequence
inside
1  -  27
TMhelix
28  -  50
outside
51  -  137
TMhelix
138  -  155
inside
156  -  205
TMhelix
206  -  228
outside
229  -  995
TMhelix
996  -  1018
inside
1019  -  1080
TMhelix
1081  -  1103
outside
1104  -  1604
TMhelix
1605  -  1627
inside
1628  -  1640
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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