CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster210
Avian_KY073747(APD51503.1), Camel_NC_028752(YP_009194643.1), Camel_KT368914(ALA50246.1), Camel_KT368913(ALA50239.1), Camel_KT368916(ALA50260.1), Camel_KT368915(ALA50253.1), Camel_KT368908(ALA50204.1), Camel_KT368896(ALA50120.1), Camel_KT368895(ALA50113.1), Camel_KT368897(ALA50127.1), Camel_KT368901(ALA50155.1), Camel_KT368900(ALA50148.1), Camel_KT368899(ALA50141.1), Camel_KT368898(ALA50134.1), Camel_KT368911(ALA50225.1), Camel_KT368894(ALA50106.1), Camel_KT368910(ALA50218.1), Camel_KT368893(ALA50099.1), Camel_KT368892(ALA50092.1), Camel_KT368912(ALA50232.1), Camel_KT368909(ALA50211.1), Camel_KT368906(ALA50190.1), Camel_KT368905(ALA50183.1), Camel_KT368904(ALA50176.1), Camel_KT368903(ALA50169.1), Camel_KT368902(ALA50162.1), Camel_KU291449(AOG74793.1), Camel_KT253326(AOI28279.1), Camel_KT253328(AOI28294.1), Camel_KT253324(AOI28262.1), Camel_KT253325(AOI28271.1), Camel_KT253327(AOI28287.1), Camel_MF593473(ATI09441.1), Camel_JQ410000(AFI49435.1), Human_229E_NC_002645(NP_073556.1), Human_229E_KY369914(APT69891.1), Human_229E_KY369912(APT69880.1), Human_229E_MN369046(QEO75989.1), Human_229E_KY369909(APT69860.1), Human_229E_KY369908(APT69853.1), Human_229E_KY674914(ARB07396.1), Human_229E_KY621348(ARK08624.1), Human_229E_KY983587(ARU07605.1), Human_229E_KY967357(ARK08646.1), Human_229E_KY684760(ARA15433.1), Human_229E_KY369911(APT69873.1), Human_229E_KY369910(APT69866.1), Human_229E_KY369913(APT69887.1), Human_229E_MN306046(QEG03789.1), Human_229E_KY674919(ARB07429.1), Human_229E_KY996417(ARX11400.1), Human_229E_KF514430(AGT21349.1), Human_229E_KF514433(AGT21371.1), Human_229E_KF514432(AGT21364.1), Human_229E_MF542265(AST12968.1), Human_229E_JX503061(AFR79261.1), Human_229E_KU291448(AOG74787.1), Human_229E_JX503060(AFR79254.1), Camel_KT368907(ALA50197.1),
Cluster211
Bat_DQ339101(ABC70718.1), Human_HKU1_MK167038(AZS52617.1), Human_HKU1_KY674941(ARB07598.1), Human_HKU1_KY674942(ARB07607.1), Human_HKU1_KY674943(ARB07616.1), Human_HKU1_NC_006577(YP_173237.1), Human_HKU1_DQ415906(ABD75576.1), Human_HKU1_DQ415905(ABD75568.1), Human_HKU1_DQ415904(ABD75560.1), Human_HKU1_DQ415903(ABD75552.1), Human_HKU1_DQ415902(ABD75544.1), Human_HKU1_DQ415901(ABD75536.1), Human_HKU1_DQ415900(ABD75528.1), Human_HKU1_DQ415899(ABD75520.1), Human_HKU1_DQ415898(ABD75512.1), Human_HKU1_DQ415897(ABD75504.1), Human_HKU1_DQ415896(ABD75496.1), Human_HKU1_DQ415914(ABD75640.1), Human_HKU1_DQ415913(ABD75632.1), Human_HKU1_DQ415912(ABD75624.1), Human_HKU1_DQ415911(ABD75616.1), Human_HKU1_DQ415910(ABD75608.1), Human_HKU1_DQ415909(ABD75600.1), Human_HKU1_DQ415908(ABD75592.1), Human_HKU1_DQ415907(ABD75584.1), Human_HKU1_KF686340(AGW27835.1), Human_HKU1_KF430201(AGT17768.1), Human_HKU1_KF686344(AGW27871.1), Human_HKU1_KF686343(AGW27862.1), Human_HKU1_KF686346(AGW27880.1), Human_HKU1_KF686342(AGW27853.1), Human_HKU1_KF686341(AGW27844.1), Human_HKU1_MH940245(AYN64560.1), Human_HKU1_HM034837(ADN03338.1), Human_HKU1_KT779556(AMN88693.1), Human_HKU1_KT779555(AMN88685.1), Human_HKU1_AY884001(AAX76520.1), Human_HKU1_KY674921(ARB07437.1), Human_HKU1_AY597011(AAT98579.1),
Cluster212
Avian_MN611525(QHA24728.1),
Cluster213
Canine_JQ404410(AFG19745.1), Canine_KC175341(AFX81113.1), Canine_KC175340(AFX81103.1), Canine_GQ477367(ADB28913.1), Canine_KP981644(AKA65835.1), Canine_JN856008(AEQ61973.1), Canine_JQ404409(AFG19729.1), Canine_KC175339(AFX81086.1), Canine_KY063618(ASB15762.1), Canine_KY063617(ASB15754.1), Canine_KY063616(ASB15744.1), Canine_KP849472(AKZ66475.1), Feline_NC_002306(YP_004070199.1), Feline_JQ408981(AFH55126.1), Feline_KC461236(AGZ84532.1), Feline_KC461237(AGZ84542.1), Feline_KC461235(AGZ84522.1), Feline_FJ938062(ACT10976.1), Feline_FJ938055(ACT10901.1), Feline_FJ938053(ACT10882.1), Feline_JN183883(AEK25527.1), Feline_FJ938056(ACT10911.1), Feline_JN183882(AEK25516.1), Feline_HQ392469(ADO39823.1), Feline_FJ938054(ACT10891.1), Feline_HQ012372(ADL71503.1), Feline_HQ012371(ADL71492.1), Feline_HQ392472(ADO39855.1), Feline_FJ938061(ACT10965.1), Feline_HQ012370(ADL71481.1), Feline_GU553362(ADC35478.1), Feline_GU553361(ADC35467.1), Feline_HQ012369(ADL71471.1), Feline_HQ392471(ADO39845.1), Feline_FJ938060(ACT10954.1), Feline_HQ392470(ADO39834.1), Feline_HQ012368(ADL71461.1), Feline_HQ012367(ADL71450.1), Feline_FJ938058(ACT10932.1), Feline_FJ938057(ACT10922.1), Feline_FJ938052(ACT10871.1), Feline_FJ938059(ACT10943.1), Feline_JN634064(AFH58015.1), Feline_KY566211(AUG98147.1), Feline_KY566210(AUG98136.1), Feline_KY566209(AUG98125.1), Feline_KY292377(ASB16893.1), Feline_DQ010921(AAY32599.1), Feline_KF530123(AGT52086.1), Feline_GQ152141(ACS44223.1), Feline_DQ848678(ABI14451.1), Feline_DQ286389(ABD33845.1), Feline_JQ408980(AFH55117.1), Feline_FJ938051(ACT10860.1), Feline_MN165107(QDM36992.1), Feline_KX722529(ASU62494.1), Feline_KU215419(AMD11136.1), Feline_MG893511(AXE71626.1), Feline_KU215423(AMD11181.1), Feline_KU215428(AMD11236.1), Feline_KU215427(AMD11225.1), Feline_KU215426(AMD11214.1), Feline_KU215422(AMD11170.1), Feline_KU215421(AMD11159.1), Feline_KU215420(AMD11148.1), Feline_KU215425(AMD11203.1), Feline_KU215424(AMD11192.1), Feline_KX722530(ASU62505.1), Feline_EU186072(ABX60148.1), Feline_KP143511(AJO27019.1), Feline_KP143510(AJO27009.1), Feline_KP143509(AJO26999.1), Feline_KP143508(AJO26989.1), Feline_KP143507(AJO26979.1), Feline_KP143512(AJO27029.1), Feline_MH817484(AYF53099.1), Human_TGEV_KX900393(ASV64282.1), Human_TGEV_KX900408(ASV64416.1), Human_TGEV_KX900401(ASV64354.1), Human_TGEV_KX900411(ASV64443.1), Human_TGEV_KX900404(ASV64380.1), Human_TGEV_KX900399(ASV64336.1), Human_TGEV_KX900397(ASV64318.1), Human_TGEV_KX900410(ASV64434.1), Human_TGEV_KX900409(ASV64425.1), Human_TGEV_KX900407(ASV64407.1), Human_TGEV_KX900405(ASV64389.1), Human_TGEV_KX900398(ASV64327.1), Human_TGEV_KX900395(ASV64300.1), Human_TGEV_KX900400(ASV64344.1), Human_TGEV_KX900406(ASV64398.1), Human_TGEV_KX900403(ASV64372.1), Human_TGEV_KX900396(ASV64309.1), Human_TGEV_KX900394(ASV64291.1), Human_TGEV_KX900402(ASV64363.1), Human_TGEV_DQ443743(ABD97840.1), Human_TGEV_EU074218(ABU49664.1), Porcine_NC_038861(NP_058428.1), Porcine_NC_028806(YP_009199247.1), Porcine_HQ462571(ADY39745.1), Porcine_DQ201447(ABC72419.1), Porcine_KU729220(AML22779.1), Porcine_KX499468(AQT01354.1), Porcine_KT696544(AMB66493.1), Porcine_FJ755618(ACN71201.1), Porcine_KC962433(AGM75131.1), Porcine_KP202848(AKA60059.1), Porcine_KX083668(APQ31247.1), Porcine_HM776941(AEM55571.1), Porcine_KY406735(ASV45153.1), Porcine_KR270796(AKV62760.1), Porcine_LT545990(YP_009199247.1), Feline_AY994055(AAY16380.1), Porcine_DQ811785(ABG89293.1), Porcine_DQ811786(ABG89310.1), Porcine_DQ811787(ABG89315.1), Porcine_DQ811788(ABG89327.1), Porcine_DQ811789(ABG89328.1), Porcine_KR061459(ALR84919.1),
Cluster214
Bat_NC_028814(YP_009199794.1), Bat_KJ473807(AIA62256.1), Bat_KJ473810(AIA62275.1),
Cluster215
Bat_MK720946(QCX35185.1), Bat_MK720945(QCX35174.1),
Cluster216
Dolphin_KF793826(AHB63520.1), Dolphin_KF793825(AHB63506.1), Dolphin_KF793824(AHB63493.1), Whale_EU111742(ABW87831.1), Whale_NC_010646(YP_001876448.1), Dolphin_MN690608(QII89031.1), Dolphin_MN690609(QII89045.1), Dolphin_MN690610(QII89059.1), Dolphin_MN690611(QII89073.1),
Cluster217
Human_NL63_MG428699(AWK59935.1), Human_NL63_MG428704(AWK59965.1), Human_NL63_MG428706(AWK59977.1), Human_NL63_MG428702(AWK59953.1), Human_NL63_MG428705(AWK59971.1), Human_NL63_NC_005831(YP_003771.1), Human_NL63_KY983586(ARU07598.1), Human_NL63_MN306040(QEG03752.1), Human_NL63_MN306018(QEG03735.1), Human_NL63_KX179500(APF29075.1), Human_NL63_KF530107(AGT51349.1), Human_NL63_KF530113(AGT51391.1), Human_NL63_KF530104(AGT51328.1), Human_NL63_KF530109(AGT51363.1), Human_NL63_KF530111(AGT51377.1), Human_NL63_KF530108(AGT51356.1), Human_NL63_KF530114(AGT51398.1), Human_NL63_KF530106(AGT51342.1), Human_NL63_KF530110(AGT51370.1), Human_NL63_KF530105(AGT51335.1), Human_NL63_KF530112(AGT51384.1), Human_NL63_JQ765563(AFD98754.1), Human_NL63_JQ765567(AFD98782.1), Human_NL63_JQ765565(AFD98768.1), Human_NL63_JQ765564(AFD98761.1), Human_NL63_JQ765566(AFD98775.1), Human_NL63_JQ765572(AFD98817.1), Human_NL63_JQ765571(AFD98810.1), Human_NL63_JQ765570(AFD98803.1), Human_NL63_JQ765569(AFD98796.1), Human_NL63_JQ765568(AFD98789.1), Human_NL63_JQ765575(AFD98838.1), Human_NL63_JQ765574(AFD98831.1), Human_NL63_JQ765573(AFD98824.1), Human_NL63_KY674915(ARB07403.1), Human_NL63_KY674916(ARB07410.1), Human_NL63_KY554971(ARE29987.1), Human_NL63_KY554970(ARE29981.1), Human_NL63_KY829118(ARK08631.1), Human_NL63_KY554969(ARE29975.1), Human_NL63_KY554968(ARE29969.1), Human_NL63_KY554967(ARE29963.1), Human_NL63_MK334045(QED88030.1), Human_NL63_MK334047(QED88044.1), Human_NL63_MK334044(QED88023.1), Human_NL63_MK334043(QED88016.1), Human_NL63_MK334046(QED88037.1), Human_NL63_KU521535(ANU06088.1), Human_NL63_KT381875(ALJ53435.1), Human_NL63_JX504050(AFV53152.1), Human_NL63_MG428701(AWK59947.1), Human_NL63_MG428703(AWK59959.1), Human_NL63_KT266906(AKT07956.1), Human_NL63_MG772808(AVA26877.1), Human_NL63_JX524171(AFQ55888.1), Human_NL63_JX104161(AFO70495.1), Human_NL63_DQ445912(ABE97134.1), Human_NL63_DQ445911(ABE97141.1), Human_G1_AY518894(AAS89771.1), Human_NL63_AY567487(AAS58181.1), Human_NL63_KX179497(APF29065.1), Human_NL63_KX179498(APF29067.1), Human_NL63_KX179499(APF29069.1), Murine_NC_046955(YP_009755842.1),
Cluster218
Mink_NC_023760(YP_009019186.1), Ferret_NC_030292(YP_009256201.1), Mink_HM245926(ADI80526.1), Ferret_KX512810(ASR18950.1), Ferret_KX512809(ASR18942.1), Ferret_LC119077(BAV31353.1), Ferret_LC215871(BBA21172.1), Mink_MF113046(AVY53339.1), Civet_HM245925(ADI80517.1), Civet_KM347965(AKG92644.1),
Cluster219
Bat_MF094686(AVM80488.1), Bat_MF094685(AVM80479.1), Bat_MF094688(AVM80504.1), Bat_MF094687(AVM80496.1), Bat_MN611522(QHA24707.1), Bat_NC_028824(YP_009200739.1), Bat_NC_009988(YP_001552240.1), Bat_EF203065(ABQ57220.1), Bat_EF203067(ABQ57236.1), Bat_EF203066(ABQ57228.1), Bat_EF203064(ABQ57212.1), Porcine_MH697599(QBP43304.1), Porcine_MK977618(QEH62673.1), Porcine_MK651076(QDE12101.1), Porcine_MH615810(AXP98443.1), Porcine_MG557844(AVM41574.1), Porcine_MG605091(AXY04096.1), Porcine_MG605090(AXY04087.1), Porcine_MF094684(AVM80470.1), Porcine_MF094683(AVM80461.1), Porcine_MF094682(AVM80452.1), Porcine_MF094681(AVM80443.1), Porcine_MF769444(AVM80780.1), Porcine_MF769443(AVM80771.1), Porcine_MF769442(AVM80762.1), Porcine_MF769432(AVM80672.1), Porcine_MF769426(AVM80618.1), Porcine_MF769441(AVM80753.1), Porcine_MF769427(AVM80627.1), Porcine_MF769416(AVM80528.1), Porcine_MF769437(AVM80717.1), Porcine_MF769428(AVM80636.1), Porcine_MF769438(AVM80726.1), Porcine_MF769433(AVM80681.1), Porcine_MF769434(AVM80690.1), Porcine_MF769435(AVM80699.1), Porcine_MF769417(AVM80537.1), Porcine_MF769429(AVM80645.1), Porcine_MF769436(AVM80708.1), Porcine_MF769420(AVM80564.1), Porcine_MF769421(AVM80573.1), Porcine_MF769418(AVM80546.1), Porcine_MF769422(AVM80582.1), Porcine_MF769431(AVM80663.1), Porcine_MF769419(AVM80555.1), Porcine_MF769425(AVM80609.1), Porcine_MF769439(AVM80735.1), Porcine_MF769430(AVM80654.1), Porcine_MF769424(AVM80600.1), Porcine_MF769423(AVM80591.1), Porcine_MF769440(AVM80744.1), Porcine_MF370205(ATN23893.1), Porcine_MG742313(AWJ64267.1), Porcine_MH539766(QAS69032.1), Porcine_MF167434(ASK51721.1), Bat_KJ473808(AIA62263.1), Porcine_MK994934(QID98955.1), Porcine_MK994935(QID98964.1), Porcine_MK994936(QID98973.1), Porcine_MK994937(QID98980.1), Porcine_MT199591(QJF53981.1), Porcine_MT199592(QJF53990.1),
Cluster220
Bat_MN611521(QHA24700.1),
Cluster221
Murine_NC_035191(YP_009389428.1), Murine_NC_048211(YP_009824977.1),
Cluster222
Avian_NC_011549(YP_002308501.1), Avian_NC_011550(YP_002308510.1), Avian_NC_011547(YP_002308483.1), Avian_NC_016991(YP_005352842.1), Avian_JQ065044(AFD29205.1), Avian_MG812378(AWV67138.1), Avian_MG812376(AWV67120.1), Avian_MG812375(AWV67111.1), Avian_MG812377(AWV67129.1), Avian_NC_016992(YP_005352850.1), Avian_JQ065045(AFD29213.1), Avian_MH532440(AXP20285.1), Avian_LC364345(BBC54856.1), Avian_LC364346(BBC54865.1), Avian_LC364344(BBC54846.1), Avian_NC_016993(YP_005352858.1), Avian_JQ065046(AFD29221.1), Avian_LC364343(BBC54836.1), Avian_LC364342(BBC54826.1), Avian_FJ376620(ACJ12048.1), Porcine_NC_016990(YP_005352835.1), Porcine_NC_039208(YP_009513025.1), Porcine_KJ769231(AIH06861.1), Porcine_KR265863(AML40892.1), Porcine_KR265862(AML40885.1), Porcine_KR265858(AML40857.1), Porcine_KR265861(AML40878.1), Porcine_KR265860(AML40871.1), Porcine_KR265855(AML40836.1), Porcine_KR265854(AML40829.1), Porcine_KR265847(AML40780.1), Porcine_KR265864(AML40899.1), Porcine_KR265848(AML40787.1), Porcine_KR265859(AML40864.1), Porcine_KR265853(AML40822.1), Porcine_KR265850(AML40801.1), Porcine_KR265849(AML40794.1), Porcine_KR265865(AML40906.1), Porcine_KR265851(AML40808.1), Porcine_KR265852(AML40815.1), Porcine_KR265857(AML40850.1), Porcine_KR265856(AML40843.1), Porcine_KP981395(AKA97942.1), Porcine_KR150443(AML40608.1), Porcine_MK005882(QCO76967.1), Porcine_MF041982(AUH28254.1), Porcine_MF431743(ASR75150.1), Porcine_KX022605(ANI85850.1), Porcine_KX022604(ANI85843.1), Porcine_KX022603(ANI85836.1), Porcine_KX022602(ANI85829.1), Porcine_KX834351(APZ76694.1), Porcine_KX834352(APZ76702.1), Porcine_KU051649(AMN91674.1), Porcine_KU051641(AMN91625.1), Porcine_MH715491(AYU65238.1), Porcine_KU981059(ANA78447.1), Porcine_KU981061(ANA78461.1), Porcine_KU981062(ANA78468.1), Porcine_KU981060(ANA78454.1), Porcine_MH708125(AXP32234.1), Porcine_MH708124(AXP32227.1), Porcine_MH708123(AXP32220.1), Porcine_MF431742(ASR75143.1), Porcine_KU665558(AML83920.1), Porcine_MF280390(AVR48523.1), Porcine_KY065120(APG38202.1), Porcine_MK330605(QDP14522.1), Porcine_MF642325(AWV96584.1), Porcine_MF642324(AWV96577.1), Porcine_MF642323(AWV96570.1), Porcine_MF642322(AWV96563.1), Porcine_KX443143(AQS99157.1), Porcine_KT021234(ALD83760.1), Porcine_KT266822(AKQ63087.1), Porcine_KY513725(AUG59168.1), Porcine_KY513724(AUG59160.1), Porcine_KM820765(AIT11904.1), Porcine_KU984334(AMW88201.1), Porcine_KR131621(ALA13749.1), Porcine_KY926512(ASS83090.1), Porcine_MG837130(AWG96869.1), Porcine_MG837131(AWG96876.1), Porcine_KY364365(ARJ31778.1), Porcine_KY354364(AQT34139.1), Porcine_KY354363(AQT34133.1), Porcine_KP757892(AKC54446.1), Porcine_KT336560(ALS54090.1), Porcine_MG832584(AYP31076.1), Porcine_MF095123(ASY98690.1), Porcine_MG242062(AVZ61086.1), Porcine_KP757891(AKC54439.1), Porcine_KY363868(ATV90805.1), Porcine_KY363867(ATV90794.1), Porcine_KP757890(AKC54432.1), Porcine_KY293678(ASK86345.1), Porcine_KY293677(ASK86338.1), Porcine_LC260044(BBA66351.1), Porcine_LC260043(BBA66344.1), Porcine_LC260042(BBA66337.1), Porcine_LC260041(BBA66330.1), Porcine_LC260045(BAZ95613.1), Porcine_LC260040(BBA66323.1), Porcine_LC260039(BBA66316.1), Porcine_LC260038(BBA66309.1), Porcine_KJ567050(AHM88404.1), Porcine_KJ584356(AIA60984.1), Porcine_KJ584358(AIA60998.1), Porcine_KJ462462(AHN16224.1), Porcine_KT381613(ALJ32189.1), Porcine_KJ584359(AIA61005.1), Porcine_KM012168(AIP90490.1), Porcine_KJ620016(AIA99522.1), Porcine_KJ584357(AIA60991.1), Porcine_KJ569769(AHN16231.1), Porcine_KJ584355(AIA60977.1), Porcine_KJ601780(AIB07811.1), Porcine_KJ601779(AIB07804.1), Porcine_KJ601778(AIB07797.1), Porcine_KJ601777(AIB07789.1), Porcine_KJ481931(AHL45011.1), Porcine_LC216915(BAY00734.1), Porcine_LC216914(BAY00727.1), Avian_FJ376619(ACJ12039.1), Avian_FJ376621(ACJ12057.1), Avian_FJ376622(ACJ12066.1), Porcine_JQ065042(AFD29191.1), Porcine_JQ065043(AFD29198.1), Porcine_KT371504(ALZ48523.1), Porcine_KT371505(ALZ48524.1), Porcine_KT371506(ALZ48525.1), Porcine_KT371507(ALZ48526.1), Porcine_KX118627(AOM53031.1), Porcine_KX998969(ATP16466.1), Porcine_KY398010(ATU88974.2), Porcine_MF948005(ATJ00133.1), Porcine_MG738720(AVY03266.1), Porcine_MG837132(AWG96882.1), Porcine_MG837133(AWG96888.1), Porcine_MH025762(QBQ34485.1), Porcine_MH025763(QBQ34492.1), Porcine_MH025764(QBQ34499.1), Porcine_MK211169(QDF21514.1), Porcine_MK330604(QDP14515.1), Porcine_MK355396(QDH76192.1), Porcine_MK572803(QDH76197.1), Porcine_MK993519(QGZ00529.1), Porcine_MN025260(QHI08615.1), Porcine_MN249445(QFU80845.1),
Cluster223
Avian_NC_016996(YP_005352885.1), Avian_JQ065049(AFD29248.1),
Cluster224
Avian_NC_016995(YP_005352875.1), Avian_JQ065048(AFD29238.1),
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