CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster270
Ape_MG977449(AWW13554.1), Ape_MG977447(AWW13538.1), Ape_MG977445(AWW13522.1), Ape_MG977444(AWW13514.1), Bat_DQ339101(ABC70722.1), Camel_KF906251(AHN64795.1), Camel_KF906250(AHN64786.1), Camel_KF906249(AHN64777.1), Camel_MN514967(QEY10668.1), Camel_MN514966(QEY10660.1), Camel_MN514965(QEY10652.1), Camel_MN514964(QEY10644.1), Camel_MN514963(QEY10636.1), Camel_MN514962(QEY10628.1), Camel_KT368891(ALA50083.1), Canine_JX860640(AFW97365.1), Canine_KX432213(AQT26503.1), Cow_MH810163(AZU96329.1), Cow_FJ938066(ACT11023.1), Cow_FJ938065(ACT11012.1), Cow_NC_003045(NP_150082.1), Cow_AF220295(AAL40405.1), Cow_KU886219(ANJ04979.1), Cow_EF424618(ABP38270.1), Cow_EF424617(ABP38255.1), Cow_EF424620(ABP38285.1), Cow_MG757142(AVI15049.1), Cow_MG757141(AVI15038.1), Cow_MG757138(AVI15005.1), Cow_MG757140(AVI15027.1), Cow_MG757139(AVI15016.1), Cow_AF391542(AAL57312.1), Cow_AF391541(AAK83361.1), Cow_KX982264(ARD06004.1), Cow_MH043955(AVZ61134.1), Cow_MH043953(AVZ61114.1), Cow_MH043954(AVZ61124.1), Cow_MH043952(AVZ61104.1), Cow_AB354579(BAF75636.1), Cow_FJ938063(ACT10988.1), Cow_EF424616(ABP38250.1), Cow_EF424615(ABP38238.1), Cow_FJ938064(ACT11000.1), Cow_EF424619(ABP38278.1), Cow_DQ811784(ABG89282.1), Cow_KU558923(ANJ04733.1), Cow_KU558922(ANJ04722.1), Human_OC43_AY585228(AAT84357.1), Human_OC43_AY391777(AAR01018.1), Human_OC43_KY369907(APU51940.1), Human_OC43_MN306053(QEG03797.1), Human_OC43_MN310476(QEG03807.1), Human_OC43_KY369905(APU51920.1), Human_OC43_KY369906(APU51930.1), Human_OC43_KY983588(ARU07613.1), Human_OC43_KY967356(ARK08638.1), Human_OC43_KY983585(ARU07590.1), Human_OC43_KY967358(ARK08654.1), Human_OC43_KY967359(ARK08664.1), Human_OC43_KY983583(ARU07571.1), Human_OC43_KY967360(ARK08673.1), Human_OC43_KY967361(ARK08682.1), Human_OC43_KY684759(ARA15424.1), Human_OC43_MN306043(QEG03780.1), Human_OC43_MN306042(QEG03770.1), Human_OC43_MN306041(QEG03760.1), Human_OC43_MN310478(QEG03817.1), Human_OC43_MN306036(QEG03743.1), Human_OC43_KF530081(AGT51623.1), Human_OC43_KF530070(AGT51514.1), Human_OC43_KF530069(AGT51504.1), Human_OC43_KF530099(AGT51803.1), Human_OC43_KF530080(AGT51613.1), Human_OC43_KF530072(AGT51534.1), Human_OC43_KF530098(AGT51793.1), Human_OC43_KF530064(AGT51454.1), Human_OC43_KF530063(AGT51444.1), Human_OC43_KF530078(AGT51593.1), Human_OC43_KF530075(AGT51564.1), Human_OC43_KF530084(AGT51653.1), Human_OC43_KF530090(AGT51713.1), Human_OC43_KF530071(AGT51524.1), Human_OC43_KF530074(AGT51554.1), Human_OC43_KF530097(AGT51783.1), Human_OC43_KF530079(AGT51603.1), Human_OC43_KF530095(AGT51763.1), Human_OC43_KF530094(AGT51753.1), Human_OC43_KF530082(AGT51633.1), Human_OC43_KF530067(AGT51484.1), Human_OC43_KF530089(AGT51703.1), Human_OC43_KF530091(AGT51723.1), Human_OC43_KF530096(AGT51773.1), Human_OC43_KF530076(AGT51573.1), Human_OC43_KF530088(AGT51693.1), Human_OC43_KF530061(AGT51425.1), Human_OC43_KF530065(AGT51464.1), Human_OC43_KF530066(AGT51474.1), Human_OC43_KF530073(AGT51544.1), Human_OC43_KF530087(AGT51683.1), Human_OC43_KF530083(AGT51643.1), Human_OC43_KF530077(AGT51583.1), Human_OC43_KF530086(AGT51673.1), Human_OC43_KF530085(AGT51663.1), Human_OC43_KF530060(AGT51415.1), Human_OC43_KF530092(AGT51733.1), Human_OC43_KF530068(AGT51494.1), Human_OC43_KY554975(ARE30018.1), Human_OC43_KY554974(ARE30009.1), Human_OC43_KY554973(ARE30000.1), Human_OC43_KY554972(ARE29991.1), Human_OC43_KJ958219(AIX09810.1), Human_OC43_KJ958218(AIX09802.1), Human_OC43_JN129835(AEN19369.1), Human_OC43_JN129834(AEN19361.1), Human_OC43_KU131570(AMK59680.1), Human_OC43_AY903459(AAX85672.1), Human_OC43_KP198610(AJC98130.1), Human_OC43_AY903460(AAX85681.1), Human_OC43_KP198611(AJC98138.1), Human_OC43_AY585229(AAT84365.1), Human_OC43_MG977452(AWW13578.1), Human_OC43_MG977451(AWW13569.1), Human_OC43_MN026164(QDH43716.1), Human_OC43_KX538974(AQN78739.1), Human_OC43_KX538973(AQN78731.1), Human_OC43_KX538972(AQN78723.1), Human_OC43_KX538971(AQN78715.1), Human_OC43_KX538970(AQN78707.1), Human_OC43_KX538969(AQN78699.1), Human_OC43_KX538968(AQN78691.1), Human_OC43_KX538967(AQN78683.1), Human_OC43_KX538966(AQN78675.1), Human_OC43_KX538965(AQN78667.1), Human_OC43_KX538979(AQN78779.1), Human_OC43_KX538978(AQN78771.1), Human_OC43_KX538977(AQN78763.1), Human_OC43_KX538976(AQN78755.1), Human_OC43_KX538975(AQN78747.1), Human_OC43_KX538964(AQN78659.1), Human_OC43_MK303619(QBP84707.1), Human_OC43_MK303621(QBP84725.1), Human_OC43_MK303620(QBP84716.1), Human_OC43_MK303625(QBQ01842.1), Human_OC43_MK303624(QBP84752.1), Human_OC43_MK303623(QBP84743.1), Human_OC43_MK303622(QBP84734.1), Human_OC43_KX344031(AOL02456.1), Human_OC43_MF374983(ATN39867.1), Human_OC43_MF374985(ATN39882.1), Human_OC43_MF374984(ATN39875.1), Human_OC43_MH121121(AZP73843.1), Human_OC43_MF314143(AVQ05267.1), Human_OC43_KY014282(ATP16770.1), Human_OC43_KY014281(ATP16760.1), Human_HKU1_MK167038(AZS52621.1), Human_HKU1_KY674941(ARB07602.1), Human_HKU1_KY674942(ARB07611.1), Human_HKU1_KY674943(ARB07620.1), Human_HKU1_NC_006577(YP_173241.1), Human_HKU1_DQ415906(ABD75580.1), Human_HKU1_DQ415905(ABD75572.1), Human_HKU1_DQ415904(ABD75564.1), Human_HKU1_DQ415903(ABD75556.1), Human_HKU1_DQ415902(ABD75548.1), Human_HKU1_DQ415901(ABD75540.1), Human_HKU1_DQ415900(ABD75532.1), Human_HKU1_DQ415899(ABD75524.1), Human_HKU1_DQ415898(ABD75516.1), Human_HKU1_DQ415897(ABD75508.1), Human_HKU1_DQ415896(ABD75500.1), Human_HKU1_DQ415914(ABD75644.1), Human_HKU1_DQ415913(ABD75636.1), Human_HKU1_DQ415912(ABD75628.1), Human_HKU1_DQ415911(ABD75620.1), Human_HKU1_DQ415910(ABD75612.1), Human_HKU1_DQ415909(ABD75604.1), Human_HKU1_DQ415908(ABD75596.1), Human_HKU1_DQ415907(ABD75588.1), Human_HKU1_KF686340(AGW27839.1), Human_HKU1_KF430201(AGT17772.1), Human_HKU1_KF686344(AGW27875.1), Human_HKU1_KF686343(AGW27866.1), Human_HKU1_KF686346(AGW27884.1), Human_HKU1_KF686342(AGW27857.1), Human_HKU1_KF686341(AGW27848.1), Human_HKU1_MH940245(AYN64564.1), Human_HKU1_HM034837(ADN03342.1), Human_HKU1_KT779556(AMN88697.1), Human_HKU1_KT779555(AMN88689.1), Human_HKU1_AY884001(AAX76524.1), Human_HKU1_KY674921(ARB07441.1), Human_HKU1_AY597011(AAT98584.1), Human_4408_FJ938067(ACT11035.1), Human_4408_FJ415324(ACJ35488.1), Murine_NC_026011(YP_009113029.1), Murine_AY910861(AAX23981.1), Murine_AF208067(AAF69348.1), Murine_AY700211(AAU06360.1), Murine_MF618253(ATN37901.1), Murine_KF268336(AGT17720.1), Murine_KF268339(AGT17753.1), Murine_KF268338(AGT17742.1), Murine_KF268337(AGT17731.1), Murine_FJ647227(ACN89781.1), Murine_FJ647220(ACN89707.1), Murine_FJ647218(ACN89692.1), Murine_FJ647225(ACN89755.1), Murine_MH687978(AYR18692.1), Murine_MH687977(AYR18683.1), Murine_MH687976(AYR18674.1), Murine_MH687974(AYR18656.1), Murine_MH687973(AYR18647.1), Murine_MH687972(AYR18638.1), Murine_MH687971(AYR18629.1), Murine_MH687970(AYR18620.1), Murine_MH687969(AYR18611.1), Murine_MH687968(AYR18602.1), Murine_KM349744(AJA91221.1), Murine_KM349743(AJA91211.1), Deer_FJ425187(ACJ66984.1), Waterbuck_FJ425184(ACJ66952.1), Waterbuck_FJ425185(ACJ66958.1), Waterbuck_FJ425186(ACJ66966.1), Deer_MG518518(AVN88327.1), Deer_FJ425188(ACJ66992.1), Deer_FJ425190(ACJ67017.1), Deer_FJ425189(ACJ67005.1), Antelope_EF424621(ABP38305.1), Rabbit_NC_017083(YP_005454248.1), Rabbit_JN874561(AFE48820.1), Rabbit_JN874560(AFE48808.1), Rabbit_JN874562(AFE48830.1), Rabbit_JN874559(AFE48798.1), Giraffe_EF424622(ABP38308.1), Giraffe_EF424623(ABP38325.1), Horse_EF446615(ABP87994.1), Horse_LC061272(BAS18849.1), Horse_LC061274(BAS18869.1), Horse_LC061273(BAS18859.1), Giraffe_EF424624(ABP38331.1), Alpaca_DQ915164(ABI94002.1), Porcine_DQ011855(AAY68301.1), Porcine_KY419103(ARC95206.1), Porcine_KY419106(ARC95230.1), Porcine_KY419112(ARC95270.1), Porcine_KY419111(ARC95262.1), Porcine_KY419109(ARC95246.1), Porcine_KY419113(ARC95277.1), Porcine_KY419110(ARC95254.1), Porcine_KY419107(ARC95238.1), Porcine_KY419105(ARC95222.1), Porcine_KY419104(ARC95214.1), Porcine_KY994645(AUF40279.1), Porcine_MF083115(AVV64338.1), Cow_U00735(AAK29779.2), Murine_KM349742(AJA91200.1), Human_OC43_NC_006213(YP_009555244.1), Murine_NC_046954(YP_009755836.1),
Cluster271
Bat_MG021452(AVV62541.1), Bat_MG021451(AVV62530.1), Bat_MG596802(AUM60018.1), Bat_KX442564(ASL68946.1), Bat_KX442565(ASL68957.1), Bat_LC469308(BBJ36012.1), Fish_MG596803(AUM60028.1), Bat_KJ473821(AHY61341.1), Human_MERS_MG987420(AWH65947.1), Human_MERS_MG987421(AWH65958.1),
Cluster272
Bat_MG762674(AVP25407.1), Bat_HM211099(ADM33567.1), Bat_HM211098(ADM33559.1), Bat_EF065516(ABN10936.1), Bat_EF065515(ABN10928.1), Bat_EF065514(ABN10920.1), Bat_HM211101(ADM33583.1), Bat_HM211100(ADM33575.1),
Cluster273
Murine_NC_026011(YP_009113030.1), Murine_KM349744(AJA91222.1), Murine_KM349743(AJA91212.1), Murine_KM349742(AJA91201.1),
Cluster274
Bat_MK492263(QEH60464.1),
Cluster275
Bat_NC_032107(YP_009328938.1), Human_NL63_MG428699(AWK59934.1), Human_NL63_MG428704(AWK59964.1), Human_NL63_MG428706(AWK59976.1), Human_NL63_MG428702(AWK59952.1), Human_NL63_MG428705(AWK59970.1), Human_NL63_NC_005831(YP_003770.1), Human_NL63_KY983586(ARU07597.1), Human_NL63_MN306040(QEG03751.1), Human_NL63_MN306018(QEG03734.1), Human_NL63_KX179500(APF29074.1), Human_NL63_KF530107(AGT51348.1), Human_NL63_KF530113(AGT51390.1), Human_NL63_KF530104(AGT51327.1), Human_NL63_KF530109(AGT51362.1), Human_NL63_KF530111(AGT51376.1), Human_NL63_KF530108(AGT51355.1), Human_NL63_KF530114(AGT51397.1), Human_NL63_KF530106(AGT51341.1), Human_NL63_KF530110(AGT51369.1), Human_NL63_KF530105(AGT51334.1), Human_NL63_KF530112(AGT51383.1), Human_NL63_JQ765563(AFD98753.1), Human_NL63_JQ765567(AFD98781.1), Human_NL63_JQ765565(AFD98767.1), Human_NL63_JQ765564(AFD98760.1), Human_NL63_JQ765566(AFD98774.1), Human_NL63_JQ765572(AFD98816.1), Human_NL63_JQ765571(AFD98809.1), Human_NL63_JQ765570(AFD98802.1), Human_NL63_JQ765569(AFD98795.1), Human_NL63_JQ765568(AFD98788.1), Human_NL63_JQ765575(AFD98837.1), Human_NL63_JQ765574(AFD98830.1), Human_NL63_JQ765573(AFD98823.1), Human_NL63_KY674915(ARB07402.1), Human_NL63_KY674916(ARB07409.1), Human_NL63_KY554971(ARE29983.1), Human_NL63_KY554970(ARE29977.1), Human_NL63_KY829118(ARK08630.1), Human_NL63_KY554969(ARE29971.1), Human_NL63_KY554968(ARE29965.1), Human_NL63_KY554967(ARE29959.1), Human_NL63_MK334045(QED88029.1), Human_NL63_MK334047(QED88043.1), Human_NL63_MK334044(QED88022.1), Human_NL63_MK334043(QED88015.1), Human_NL63_MK334046(QED88036.1), Human_NL63_KU521535(ANU06087.1), Human_NL63_KT381875(ALJ53434.1), Human_NL63_JX504050(AFV53151.1), Human_NL63_MG428701(AWK59946.1), Human_NL63_MG428703(AWK59958.1), Human_NL63_KT266906(AKT07955.1), Human_NL63_MG772808(AVA26876.1), Human_NL63_JX524171(AFQ55887.1), Human_NL63_JX104161(AFO70499.1), Human_NL63_DQ445912(ABE97133.1), Human_NL63_DQ445911(ABE97140.1), Human_G1_AY518894(AAS89770.1), Human_NL63_AY567487(AAS58180.1), Human_NL63_KX179497(APF29064.1), Human_NL63_KX179498(APF29066.1), Human_NL63_KX179499(APF29068.1), Bat_KY073744(APD51478.1),
Cluster276
Bat_MF094686(AVM80485.1), Bat_MF094685(AVM80476.1), Bat_MF094688(AVM80501.1), Bat_MF094687(AVM80493.1), Bat_NC_028824(YP_009200736.1), Bat_NC_009988(YP_001552237.1), Bat_EF203065(ABQ57217.1), Bat_EF203067(ABQ57233.1), Bat_EF203066(ABQ57225.1), Bat_EF203064(ABQ57209.1), Porcine_MH697599(QBP43301.1), Porcine_MK977618(QEH62670.1), Porcine_MK651076(QDE12098.1), Porcine_MH615810(AXP98440.1), Porcine_MG557844(AVM41571.1), Porcine_MG605091(AXY04093.1), Porcine_MG605090(AXY04084.1), Porcine_MF094684(AVM80467.1), Porcine_MF094683(AVM80458.1), Porcine_MF094682(AVM80449.1), Porcine_MF094681(AVM80440.1), Porcine_MF769444(AVM80777.1), Porcine_MF769443(AVM80768.1), Porcine_MF769442(AVM80759.1), Porcine_MF769432(AVM80669.1), Porcine_MF769426(AVM80615.1), Porcine_MF769441(AVM80750.1), Porcine_MF769427(AVM80624.1), Porcine_MF769416(AVM80525.1), Porcine_MF769437(AVM80714.1), Porcine_MF769428(AVM80633.1), Porcine_MF769438(AVM80723.1), Porcine_MF769433(AVM80678.1), Porcine_MF769434(AVM80687.1), Porcine_MF769435(AVM80696.1), Porcine_MF769417(AVM80534.1), Porcine_MF769429(AVM80642.1), Porcine_MF769436(AVM80705.1), Porcine_MF769420(AVM80561.1), Porcine_MF769421(AVM80570.1), Porcine_MF769418(AVM80543.1), Porcine_MF769422(AVM80579.1), Porcine_MF769431(AVM80660.1), Porcine_MF769419(AVM80552.1), Porcine_MF769425(AVM80606.1), Porcine_MF769439(AVM80732.1), Porcine_MF769430(AVM80651.1), Porcine_MF769424(AVM80597.1), Porcine_MF769423(AVM80588.1), Porcine_MF769440(AVM80741.1), Porcine_MF370205(ATN23890.1), Porcine_MG742313(AWJ64264.1), Porcine_MF167434(ASK51718.1), Bat_KJ473808(AIA62260.1), Porcine_MK994934(QID98952.1), Porcine_MK994935(QID98961.1), Porcine_MK994936(QID98970.1), Porcine_MK994937(QID98977.1), Porcine_MT199591(QJF53978.1), Porcine_MT199592(QJF53987.1),
Cluster277
Bat_MF094686(AVM80487.1), Bat_MF094685(AVM80478.1), Bat_MF094688(AVM80503.1), Bat_MF094687(AVM80495.1), Bat_MN611522(QHA24706.1), Bat_NC_028824(YP_009200738.1), Bat_NC_009988(YP_001552239.1), Bat_EF203065(ABQ57219.1), Bat_EF203067(ABQ57235.1), Bat_EF203066(ABQ57227.1), Bat_EF203064(ABQ57211.1), Porcine_MH697599(QBP43303.1), Porcine_MK977618(QEH62672.1), Porcine_MK651076(QDE12100.1), Porcine_MH615810(AXP98442.1), Porcine_MG557844(AVM41573.1), Porcine_MG605091(AXY04095.1), Porcine_MG605090(AXY04086.1), Porcine_MF094684(AVM80469.1), Porcine_MF094683(AVM80460.1), Porcine_MF094682(AVM80451.1), Porcine_MF094681(AVM80442.1), Porcine_MF769444(AVM80779.1), Porcine_MF769443(AVM80770.1), Porcine_MF769442(AVM80761.1), Porcine_MF769432(AVM80671.1), Porcine_MF769426(AVM80617.1), Porcine_MF769441(AVM80752.1), Porcine_MF769427(AVM80626.1), Porcine_MF769416(AVM80527.1), Porcine_MF769437(AVM80716.1), Porcine_MF769428(AVM80635.1), Porcine_MF769438(AVM80725.1), Porcine_MF769433(AVM80680.1), Porcine_MF769434(AVM80689.1), Porcine_MF769435(AVM80698.1), Porcine_MF769417(AVM80536.1), Porcine_MF769429(AVM80644.1), Porcine_MF769436(AVM80707.1), Porcine_MF769420(AVM80563.1), Porcine_MF769421(AVM80572.1), Porcine_MF769418(AVM80545.1), Porcine_MF769422(AVM80581.1), Porcine_MF769431(AVM80662.1), Porcine_MF769419(AVM80554.1), Porcine_MF769425(AVM80608.1), Porcine_MF769439(AVM80734.1), Porcine_MF769430(AVM80653.1), Porcine_MF769424(AVM80599.1), Porcine_MF769423(AVM80590.1), Porcine_MF769440(AVM80743.1), Porcine_MF370205(ATN23892.1), Porcine_MG742313(AWJ64266.1), Porcine_MH539766(QAS69031.1), Porcine_MF167434(ASK51720.1), Bat_KJ473808(AIA62262.1), Porcine_MK994934(QID98954.1), Porcine_MK994935(QID98963.1), Porcine_MK994936(QID98972.1), Porcine_MK994937(QID98979.1), Murine_NC_046955(YP_009755841.1), Porcine_MT199591(QJF53980.1), Porcine_MT199592(QJF53989.1),
Cluster278
Murine_NC_012936(YP_003029851.1), Murine_NC_001846(NP_045301.1), Murine_JF792617(AFG25764.1), Murine_JF792616(AFG25754.1), Murine_JQ173883(AFD97611.1), Murine_GU593319(ADI59792.1), Murine_AF208066(AAF69337.1), Murine_AC_000192(YP_209237.1), Murine_MF618252(ATN37891.1), Murine_FJ884687(ACO72896.1), Murine_FJ884686(ACO72887.1), Murine_AF201929(AAF19388.1), Murine_AB551247(BAJ04700.1), Murine_JX169866(AFO11511.1), Murine_JX169867(AFO11521.1), Murine_FJ647222(ACN89725.1), Murine_FJ647219(ACN89700.1), Murine_FJ647221(ACN89721.1), Murine_FJ647226(ACN89768.1), Murine_FJ647224(ACN89749.1), Murine_FJ647223(ACN89740.1), Murine_FJ938068(ACT11045.1), Murine_NC_048217(YP_009824986.1),
Cluster279
Bat_MN611522(QHA24704.1),
Cluster280
Bat_NC_028814(YP_009199791.1), Bat_KJ473807(AIA62253.1), Bat_KJ473810(AIA62272.1),
Cluster281
Murine_NC_035191(YP_009389427.1), Murine_NC_048211(YP_009824976.1),
Cluster282
Dolphin_KF793826(AHB63514.1), Dolphin_KF793825(AHB63501.1), Dolphin_KF793824(AHB63487.1), Whale_EU111742(ABW87826.1), Whale_NC_010646(YP_001876443.1), Dolphin_MN690608(QII89025.1), Dolphin_MN690609(QII89039.1), Dolphin_MN690610(QII89053.1), Dolphin_MN690611(QII89067.1),
Cluster283
Bat_NC_028811(YP_009199612.1), Bat_KY770851(ARI44796.1), Bat_KY770850(ARI44791.1), Bat_KJ473806(AIA62249.1),
Cluster284
Bat_NC_030886(YP_009273006.1), Bat_KU762338(AOG30823.1),
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