CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster240
Bat_KY352407(APO40580.1), Bat_NC_014470(YP_003858585.1), Bat_GU190215(ADK66842.1),
Cluster241
Mink_NC_023760(YP_009019185.1), Ferret_NC_030292(YP_009256200.1), Mink_HM245926(ADI80525.1), Ferret_KX512810(ASR18949.1), Ferret_KX512809(ASR18941.1), Ferret_LC119077(BAV31352.1), Ferret_LC215871(BBA21171.1), Mink_MF113046(AVY53338.1), Civet_HM245925(ADI80516.1), Civet_KM347965(AKG92643.1),
Cluster242
Avian_NC_016996(YP_005352883.1), Avian_JQ065049(AFD29246.1),
Cluster243
Avian_JX897900(AGC01546.1), Avian_NC_010800(YP_001941170.1), Avian_GQ427173(ACV87238.1), Avian_GQ427174(ACV87250.1), Avian_GQ427176(ACV87272.1), Avian_GQ427175(ACV87261.1), Avian_EU022526(ABW75142.1), Avian_EU022525(ABW75128.1), Avian_EU095850(ABW81431.1), Avian_MK423876(QDA76259.1), Avian_MK423877(QDA76268.1), Avian_KC008600(AGK85503.1), Avian_JX840411(AFX59331.1), Avian_KU900741(ARS22434.1), Avian_KU900738(ARS22404.1), Avian_KU900742(ARS22444.1), Avian_KU900743(ARS22454.1), Avian_JF732903(AFH35025.1), Avian_KU317090(ANI87715.1), Avian_KU900744(ARS22464.1), Avian_KU900740(ARS22424.1), Avian_KU900739(ARS22414.1), Avian_GQ504724(ADP06501.1), Avian_GQ504725(ADP06511.1), Avian_FJ904713(ADA83471.1), Avian_FJ904723(ADA83571.1), Avian_FJ904722(ADA83561.1), Avian_FJ904721(ADA83551.1), Avian_FJ904720(ADA83541.1), Avian_MK728875(QCE31537.1), Avian_MK937830(QDA76313.1), Avian_KX185059(APX44069.1), Avian_KX185056(APX44045.1), Avian_MG763935(AVX27616.1), Avian_MK217375(QDA76250.1), Avian_MK937828(QDA76295.1), Avian_MK217374(QDA76241.1), Avian_MK217373(QDA76232.1), Avian_MK937829(QDA76304.1), Avian_MK217372(QDA76223.1), Avian_MH181793(QAT77252.1), Avian_EU817497(ACJ12838.1), Avian_MK937831(QDA76322.1), Avian_FJ888351(ACQ55234.1), Avian_GQ504723(ADP06488.1), Avian_GQ504722(ADP06477.1), Avian_MK581208(QDQ69203.1), Avian_MK581207(QDQ69190.1), Avian_MK581202(QDQ69125.1), Avian_MK581201(QDQ69112.1), Avian_MK581200(QDQ69099.1), Avian_MK581205(QDQ69164.1), Avian_MK581204(QDQ69151.1), Avian_MK581206(QDQ69177.1), Avian_MK581203(QDQ69138.1), Avian_KP780179(AKV60433.1), Avian_KY620116(AQY61373.1), Avian_MK032180(AZA07854.1), Avian_MK032177(AZA07828.1), Avian_MK032179(AZA07846.1), Avian_MK032178(AZA07837.1), Avian_KY776700(AVI69448.1), Avian_MH924835(AZA07518.1), Avian_MK032181(AZA07864.1), Avian_KY407558(AQY61327.1), Avian_KY407556(AQY61309.1), Avian_KY407557(AQY61318.1), Avian_KY776701(AVI69457.1), Avian_MK644086(QCQ81106.1), Avian_FJ904716(ADA83501.1), Avian_FJ904719(ADA83531.1), Avian_FJ904718(ADA83521.1), Avian_FJ904717(ADA83511.1), Avian_JQ088078(AFJ11180.1), Avian_MN096598(QEI10565.1), Avian_KU356856(ANI21153.1), Avian_JX195176(AFQ94226.1), Avian_KX219796(APV46143.1), Avian_KX219797(APV46152.1), Avian_KX236009(APY26820.1), Avian_KX252772(APY23483.1), Avian_KX275394(APZ73847.1), Avian_KX302860(APZ73656.1), Avian_KX219795(APV46134.1), Avian_KX219800(APV46179.1), Avian_KX219799(APV46170.1), Avian_KX372250(AQY03972.1), Avian_KJ435285(AHX26167.1), Avian_KX219798(APV46161.1), Avian_KX236013(APY26856.1), Avian_KX219801(APV46188.1), Avian_KJ435284(AHX26158.1), Avian_KP118886(AJT47900.1), Avian_KJ435283(AHX26149.1), Avian_KX364300(ARB66202.1), Avian_KJ435286(AHX26176.1), Avian_KX236002(APY26758.1), Avian_KX236003(APY26767.1), Avian_KX236000(APY26740.1), Avian_KP118885(AJT47891.1), Avian_KP118884(AJT47882.1), Avian_KX364292(ARB66130.1), Avian_KJ425512(AHX26140.1), Avian_KJ425511(AHX26131.1), Avian_KJ425510(AHX26122.1), Avian_KP118893(AJT47963.1), Avian_KX364291(ARB66121.1), Avian_KX364299(ARB66193.1), Avian_KX302872(APZ73764.1), Avian_KX236010(APY26829.1), Avian_KX236007(APY26802.1), Avian_KX252785(APY23600.1), Avian_KX236006(APY26793.1), Avian_KX236011(APY26838.1), Avian_KX236012(APY26847.1), Avian_KX302864(APZ73692.1), Avian_KX302863(APZ73683.1), Avian_KX259254(AQD20732.1), Avian_KX252777(APY23528.1), Avian_KX236001(APY26749.1), Avian_KY799582(AVI69489.1), Avian_JF330899(ADY62556.1), Avian_KX252791(APY26731.1), Avian_KX252787(APY23618.1), Avian_KP118888(AJT47918.1), Avian_KP118892(AJT47954.1), Avian_KX252786(APY23609.1), Avian_KF411040(AGZ89676.1), Avian_KX252784(APY23591.1), Avian_KX252780(APY23555.1), Avian_KX252782(APY23573.1), Avian_KX252779(APY23546.1), Avian_KX302865(APZ73701.1), Avian_KX302861(APZ73665.1), Avian_KX259257(AQD20759.1), Avian_KX259256(AQD20750.1), Avian_KX434790(AQY55888.1), Avian_KX259255(AQD20741.1), Avian_KX259252(AQD20714.1), Avian_KX259251(AQD20705.1), Avian_KX259250(AQD20696.1), Avian_KX302862(APZ73674.1), Avian_KX219794(APV46125.1), Avian_KX375805(AQY55807.1), Avian_KX302867(APZ73719.1), Avian_KX302873(APZ73773.1), Avian_MK937833(QDA76340.1), Avian_KX425847(AQY55861.1), Avian_KX434789(AQY55879.1), Avian_KX364297(ARB66175.1), Avian_KP036505(AJP16743.1), Avian_KP868573(ALC78751.1), Avian_MK937832(QDA76331.1), Avian_KJ425509(AHX26113.1), Avian_KC506155(AGJ98441.1), Avian_KC136209(AGE13895.1), Avian_KX364290(ARB66112.1), Avian_KX302875(APZ73791.1), Avian_KX259249(AQD20687.1), Avian_KX364296(ARB66166.1), Avian_KX236005(APY26785.1), Avian_KX364293(ARB66139.1), Avian_KX252778(APY23537.1), Avian_KX302866(APZ73710.1), Avian_KX302871(APZ73755.1), Avian_KX259253(AQD20723.1), Avian_KX259248(AQD20678.1), Avian_KJ425508(AHX26104.1), Avian_KX375808(AQY55834.1), Avian_KX185057(APX44051.1), Avian_KX236004(APY26776.1), Avian_KP790145(AKS25247.1), Avian_KX275390(APZ73811.1), Avian_KX275391(APZ73820.1), Avian_KP036502(AJP16716.1), Avian_KP790146(AKS25256.1), Avian_KP790144(AKS25238.1), Avian_KJ425507(AHX26095.1), Avian_KX302870(APZ73746.1), Avian_KX302868(APZ73728.1), Avian_KX275393(APZ73838.1), Avian_KX434788(AQY55870.1), Avian_KX372249(AQY03963.1), Avian_KP118891(AJT47945.1), Avian_KJ425506(AHX26086.1), Avian_KP868572(ALC78741.1), Avian_KX275392(APZ73829.1), Avian_KX375807(AQY55825.1), Avian_KX375806(AQY55816.1), Avian_KJ425505(AHX26077.1), Avian_JF828980(AEP84740.1), Avian_KJ425504(AHX26068.1), Avian_KJ425503(AHX26059.1), Avian_KX302869(APZ73737.1), Avian_KX252789(APY26714.1), Avian_KX252790(APY26722.1), Avian_KX252783(APY23582.1), Avian_KX252788(APY23627.1), Avian_JF274479(AEL12225.1), Avian_KX219791(APV46098.1), Avian_KX252781(APY23564.1), Avian_KX252773(APY23492.1), Avian_KP118887(AJT47909.1), Avian_KX252776(APY23519.1), Avian_KJ425502(AHX26050.1), Avian_KJ425501(AHX26041.1), Avian_KJ425500(AHX26032.1), Avian_KJ425499(AHX26023.1), Avian_KP118880(AJT47846.1), Avian_KJ425498(AHX26014.1), Avian_KP036504(AJP16734.1), Avian_KX252775(APY23510.1), Avian_KJ425497(AHX26005.1), Avian_KX252774(APY23501.1), Avian_KP118890(AJT47936.1), Avian_KP118889(AJT47927.1), Avian_KJ425496(AHX25996.1), Avian_KX247128(APW85780.1), Avian_KX247129(APW85789.1), Avian_MG448607(AVI69523.1), Avian_KP118883(AJT47873.1), Avian_KJ425495(AHX25987.1), Avian_KJ425494(AHX25978.1), Avian_KP036503(AJP16725.1), Avian_KJ425493(AHX25969.1), Avian_KX236014(APY26865.1), Avian_KJ425492(AHX25960.1), Avian_KX247130(APW85798.1), Avian_KJ425491(AHX25951.1), Avian_KJ425490(AHX25942.1), Avian_KX247127(APW85771.1), Avian_KJ425489(AHX25933.1), Avian_KX219793(APV46116.1), Avian_KJ425488(AHX25924.1), Avian_MK574043(QDA76286.1), Avian_MK574042(QDA76277.1), Avian_KJ425487(AHX25915.1), Avian_KX400753(AQY55852.1), Avian_JF330898(ADY62546.1), Avian_KX236016(APY26883.1), Avian_KP343691(AKJ66257.1), Avian_KX640829(AQY55897.1), Avian_KF411041(AGZ89685.1), Avian_KX302874(APZ73782.1), Avian_KX185058(APX44060.1), Avian_KX219792(APV46107.1), Avian_KC119407(AFY11711.1), Avian_KC013541(AFY11702.1), Avian_KP118894(AJR29317.1), Avian_JX195177(AFQ94235.1), Avian_JX195178(AFQ94244.1), Avian_KX077987(API61794.1), Avian_KX236015(APY26874.1), Avian_KP790143(AKS25229.1), Avian_KX236008(APY26811.1), Avian_KJ425486(AHX25906.1), Avian_KJ425485(AHX25897.1), Avian_JF828981(AEP84750.1), Avian_JX195175(AFQ94217.1), Avian_KX348114(APU51842.1), Avian_KX364298(ARB66184.1), Avian_KX364294(ARB66148.1), Avian_KX348116(APU51860.1), Avian_KX364295(ARB66157.1), Avian_KP118881(AJT47855.1), Avian_KP118882(AJT47864.1), Avian_KX389094(AQY55843.1), Avian_KX348115(APU51851.1), Avian_KX348117(APU51869.1), Avian_KT946798(AMR60484.1), Avian_FJ904715(ADA83491.1), Avian_FJ904714(ADA83481.1), Avian_KR231009(ALH21115.1), Avian_GQ504721(ADP06463.2), Avian_GQ504720(ADP06455.1), Avian_GU393338(ADV71818.1), Avian_GU393337(ADV71806.1), Avian_GU393336(ADV71793.1), Avian_GU393335(ADV71781.1), Avian_GU393333(ADV71756.1), Avian_GU393332(ADV71743.1), Avian_GU393331(ADV71730.1), Avian_EU714028(ACH72797.1), Avian_MF508703(AWR92749.1), Avian_JF893452(AEJ80242.1), Avian_KF460437(AIG54287.1), Avian_KF931628(AIG54299.1), Avian_MH878976(AYS76109.1), Avian_MF421320(ASM61977.1), Avian_MF421319(ASM61964.1), Avian_KT852992(AMD40267.1), Avian_KY421672(ATJ01097.1), Avian_JQ977697(AFQ31004.1), Avian_KF853202(AHI85764.1), Avian_KF574761(AGZ20166.1), Avian_KY421673(ATJ01107.1), Avian_EU714029(ACH72808.1), Avian_KM586818(AKN20496.1), Avian_KR608272(AMH39309.1), Avian_JQ977698(AFQ31014.1), Avian_MF924725(AYG86364.1), Avian_MG233398(AXT92419.1), Avian_KR902510(AKV63209.1), Avian_KJ135013(AHN54762.1), Avian_MH539772(AZP23944.1), Avian_MH539771(AZP23934.1), Avian_KY805846(ARS23156.1), Avian_KY805845(ARS23143.1), Avian_MN512438(QGM12433.1), Avian_MN512437(QGM12420.1), Avian_MN512436(QGM12408.1), Avian_MN512435(QGM12395.1), Avian_MN512434(QGM12382.1), Avian_MG738155(QAA92391.1), Avian_MG738154(QAA92381.1), Avian_MG517474(AYD78153.1), Avian_HQ850618(AEB00719.1), Avian_HQ848267(AEB00710.1), Avian_KY047602(API80974.1), Avian_KT886454(AMO03296.1), Avian_MG021194(AXR85436.1), Avian_MK878536(QCX19623.1), Avian_MN599049(QGX07414.1), Avian_MN566147(QHB80058.1), Avian_HM245923(ADI54949.1), Avian_HM245924(ADI54959.1), Avian_KT736032(AMK51952.1), Avian_MK329221(QDO71791.1), Avian_KP662631(AKC34136.1), Avian_KM213963(AIY51832.1), Avian_KF668605(AHB78804.1), Avian_KJ128295(AHN49814.1), Avian_KT736031(AMK51942.1), Avian_KF663561(AHB74012.1), Avian_KF663560(AHB74003.1), Avian_KF663559(AHB73993.1), Avian_MF882923(ATD12175.1), Avian_MG197727(AXX83287.1), Avian_MK309398(QDM02506.1), Avian_MN197549(QGR15743.1), Avian_KU361188(ANO81458.1), Avian_KU361187(ANO81447.1), Avian_MF924724(AYG86351.1), Avian_KT203557(ALE71335.1), Avian_KX272465(APY20698.1), Avian_KX266757(AOC59729.1), Avian_LN610099(CEK09112.1), Avian_KR822424(ALQ43519.1), Avian_KM454473(AKF17728.1), Avian_JF705860(AEO86772.1), Avian_NC_001451(NP_040835.1), Avian_AY851295(AAW33790.1), Avian_AY646283(AAT70776.1), Avian_AY641576(AAT70077.1), Avian_DQ001339(AAY24437.1), Avian_DQ001338(AAY24427.1), Avian_AY319651(AAP92679.1), Avian_KY626045(ARJ35795.1), Avian_KY933090(ATE90984.1), Avian_MH021175(AXB38898.1), Avian_KY626044(ARJ35785.1), Avian_KY933089(ATE90971.1), Avian_MG913342(AXQ05194.1), Avian_MG913343(AXQ05205.1), Avian_KX258195(ANY58998.1), Avian_MK071267(QCS40644.1), Human_IBV_DQ834384(ABI26427.1), Human_IBV_FJ807652(ACO37570.1), Human_IBV_KF696629(AHB79527.1), Human_IBV_EU637854(ACC94330.1), Human_IBV_EU418976(ACB59376.1), Human_IBV_EU418975(ACB59366.1), Human_IBV_KF377577(AGY56144.1), Human_IBV_AY514485(AAS00084.1), Human_IBV_FN430414(CAZ86703.1), Human_IBV_DQ646405(ABG36791.1), Human_IBV_MH779859(AYA44725.1), Human_IBV_MH779858(AYA44715.1), Human_IBV_MH779857(AYA44705.1), Human_IBV_MH779856(AYA44695.1), Human_IBV_MH779860(AYA44735.1), Human_IBV_MK142676(QCX41899.1), Avian_JF699749(AEO88932.1), Avian_MN128086(QIV13703.1), Avian_MN128087(QIV13713.1), Avian_MN128088(QIV13723.1), Avian_MN262644(QIM61644.1), Avian_MN307884(QJE49270.1), Avian_MN509587(QJS39667.1), Avian_MN509588(QJS39676.1), Avian_MN509589(QJS39685.1), Avian_MN517816(QJS39694.1), Avian_MN517817(QJS39703.1), Avian_MN531554(QJS39712.1), Avian_MN531555(QJS39721.1), Avian_MN531556(QJS39730.1), Avian_MN794188(QJR96938.1), Avian_NC_048213(YP_009825002.1), Avian_NC_048214(YP_009825012.1),
Cluster244
Horse_MG996765(AWV66919.1),
Cluster245
Fish_NC_034440(YP_009361860.1), Bat_KX574227(ARJ34229.1),
Cluster246
Bat_NC_009020(YP_001039965.1), Bat_EF065512(ABN10905.1), Bat_EF065511(ABN10896.1), Bat_EF065510(ABN10887.1), Fish_MN611520(QHA24690.1), Bat_EF065509(ABN10878.1), Bat_KJ473820(AIA62346.1), Bat_MH002340(AWH65913.1), Bat_MH002341(AWH65924.1), Bat_MH002342(AWH65935.1),
Cluster247
Avian_MN611523(QHA24713.1), Bat_NC_018871(YP_006908645.1), Bat_JQ989270(AFU92107.1), Bat_JQ989271(AFU92116.1), Bat_MN611524(QHA24721.1), Bat_MN611518(QHA24674.1), Bat_EU420138(ACA52167.1), Bat_JQ989266(AFU92073.1), Bat_JQ989273(AFU92134.1), Bat_JQ989272(AFU92125.1), Bat_JQ989268(AFU92089.1), Bat_JQ989267(AFU92081.1), Bat_JQ989269(AFU92098.1), Bat_NC_010438(YP_001718615.1), Bat_EU420139(ACA52174.1), Bat_MG916903(QBP43284.1), Bat_MG916902(QBP43273.1), Bat_EU420137(ACA52160.1), Bat_NC_010437(YP_001718608.1), Bat_MK472070(QGX41954.1), Fish_MH938448(AZF86121.1), Bat_KJ473795(AIA62203.1), Bat_KJ473796(AIA62209.1), Bat_KJ473797(AIA62215.1), Bat_KJ473798(AIA62223.1), Bat_KJ473799(AIA62230.1), Bat_KJ473800(AIA62237.1),
Cluster248
Bat_MG596802(AUM60017.1), Fish_MG596803(AUM60027.1),
Cluster249
Snake_NC_024709(YP_009052478.1), Snake_MG752895(AUS29612.1),
Cluster250
Canine_JQ404410(AFG19741.1), Canine_GQ477367(ADB28910.1), Canine_KP981644(AKA65832.1), Canine_JN856008(AEQ61970.1), Canine_JQ404409(AFG19732.1), Canine_KY063617(ASB15751.1), Canine_KY063616(ASB15741.1), Canine_KP849472(AKZ66474.1), Feline_KC461236(AGZ84529.1), Feline_KC461237(AGZ84539.1), Feline_KC461235(AGZ84519.1), Feline_FJ938062(ACT10973.1), Feline_FJ938053(ACT10879.1), Feline_JN183883(AEK25524.1), Feline_HQ392469(ADO39820.1), Feline_FJ938054(ACT10888.1), Feline_HQ012372(ADL71500.1), Feline_HQ012371(ADL71489.1), Feline_FJ938061(ACT10962.1), Feline_GU553362(ADC35475.1), Feline_GU553361(ADC35464.1), Feline_HQ392471(ADO39842.1), Feline_FJ938060(ACT10951.1), Feline_HQ392470(ADO39831.1), Feline_HQ012368(ADL71458.1), Feline_FJ938057(ACT10919.1), Feline_FJ938052(ACT10868.1), Feline_FJ938059(ACT10940.1), Feline_JN634064(AFH58018.1), Feline_KY566211(AUG98144.1), Feline_KY566210(AUG98133.1), Feline_KY566209(AUG98122.1), Feline_KY292377(ASB16890.1), Feline_KF530123(AGT52083.1), Feline_DQ286389(ABD33842.1), Feline_JQ408980(AFH55114.1), Feline_FJ938051(ACT10857.1), Feline_KX722529(ASU62491.1), Feline_KU215419(AMD11133.1), Feline_KU215423(AMD11178.1), Feline_KU215428(AMD11233.1), Feline_KU215427(AMD11222.1), Feline_KU215426(AMD11211.1), Feline_KU215422(AMD11167.1), Feline_KU215421(AMD11156.1), Feline_KU215420(AMD11145.1), Feline_KU215425(AMD11200.1), Feline_KU215424(AMD11189.1), Feline_KX722530(ASU62502.1), Feline_KP143511(AJO27016.1), Feline_KP143510(AJO27006.1), Feline_KP143509(AJO26996.1), Feline_KP143508(AJO26986.1), Feline_KP143507(AJO26976.1), Feline_KP143512(AJO27026.1), Feline_MH817484(AYF53096.1), Human_TGEV_KX900393(ASV64279.1), Human_TGEV_KX900408(ASV64413.1), Human_TGEV_KX900401(ASV64351.1), Human_TGEV_KX900411(ASV64440.1), Human_TGEV_KX900404(ASV64377.1), Human_TGEV_KX900399(ASV64333.1), Human_TGEV_KX900397(ASV64315.1), Human_TGEV_KX900410(ASV64431.1), Human_TGEV_KX900409(ASV64422.1), Human_TGEV_KX900407(ASV64404.1), Human_TGEV_KX900405(ASV64386.1), Human_TGEV_KX900398(ASV64324.1), Human_TGEV_KX900395(ASV64297.1), Human_TGEV_KX900400(ASV64342.1), Human_TGEV_KX900406(ASV64395.1), Human_TGEV_KX900403(ASV64369.1), Human_TGEV_KX900396(ASV64306.1), Human_TGEV_KX900394(ASV64288.1), Human_TGEV_KX900402(ASV64360.1), Human_TGEV_DQ443743(ABD97837.1), Human_TGEV_EU074218(ABU49661.1), Porcine_NC_028806(YP_009199244.1), Porcine_HQ462571(ADY39742.1), Porcine_DQ201447(ABC72416.1), Porcine_KU729220(AML22778.1), Porcine_KX499468(AQT01351.1), Porcine_KT696544(AMB66490.1), Porcine_FJ755618(ACN71198.1), Porcine_KC962433(AGM75128.1), Porcine_KP202848(AKA60056.1), Porcine_HM776941(AEM55568.1), Porcine_KY406735(ASV45150.1), Porcine_KR270796(AKV62757.1), Porcine_LT545990(YP_009199244.1), Porcine_DQ811785(ABG89294.1), Porcine_DQ811787(ABG89311.1), Porcine_DQ811788(ABG89326.1), Porcine_DQ811789(ABG89332.1), Porcine_KR061459(ALR84921.1),
Cluster251
Bat_KX442564(ASL68945.1), Bat_KX442565(ASL68956.1), Human_MERS_MG987420(AWH65946.1), Human_MERS_MG987421(AWH65957.1),
Cluster252
Bat_LC469308(BBJ36011.1), Bat_KJ473821(AHY61340.1),
Cluster253
Bat_NC_010438(YP_001718617.1), Bat_EU420139(ACA52176.1), Bat_KJ473797(AIA62217.1), Bat_KJ473797(AIA62218.1), Bat_KJ473798(AIA62225.1), Bat_KJ473799(AIA62232.1), Bat_KJ473800(AIA62239.1),
Cluster254
Murine_NC_032730(YP_009336486.1), Murine_NC_034972(YP_009380524.1), Murine_KF294380(APU57647.1), Murine_KX964649(AQW43026.1),
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