CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster105
 Bat_NC_028833(YP_009201730.1), Fish_MH938448(AZF86118.1), Bat_KJ473809(AIA62265.1),
Cluster106
 Porcine_MF577027(ASV51733.1),
Cluster107
 Bat_NC_009657(YP_001351684.1), Bat_MK211371(QDF43800.1), Bat_MK211370(QDF43795.1), Bat_MK211369(QDF43790.1), Bat_MH687967(AYR18591.1), Bat_MH687964(AYR18573.1), Bat_MH687963(AYR18567.1), Bat_MH687962(AYR18561.1), Bat_MH687959(AYR18543.1), Bat_MH687954(AYR18513.1), Bat_MH687953(AYR18511.1), Bat_MH687952(AYR18505.1), Bat_MH687951(AYR18499.1), Bat_MH687950(AYR18493.1), Bat_MH687949(AYR18487.1), Bat_MH687948(AYR18481.1), Bat_MH687947(AYR18479.1), Bat_MH687946(AYR18473.1), Bat_MH687945(AYR18467.1), Bat_MH687941(AYR18442.1), Bat_MH687940(AYR18436.1), Bat_MH687939(AYR18430.1), Bat_MH687938(AYR18424.1), Bat_MH687936(AYR18412.1), Bat_MH687935(AYR18406.1), Bat_MH687934(AYR18400.1),
Cluster108
 Bat_NC_032107(YP_009328935.1), Bat_KY073744(APD51475.1),
Cluster109
 Bat_NC_028814(YP_009199790.1), Bat_KJ473807(AIA62252.1), Bat_KJ473810(AIA62271.1),
Cluster110
 Bat_MN611521(QHA24696.1), Bat_MK211372(QDF43805.1), Bat_MH687966(AYR18585.1), Bat_MH687965(AYR18579.1), Bat_MH687961(AYR18555.1), Bat_MH687960(AYR18549.1), Bat_MH687958(AYR18537.1), Bat_MH687957(AYR18531.1), Bat_MH687956(AYR18525.1), Bat_MH687955(AYR18519.1), Bat_MH687944(AYR18461.1), Bat_MH687943(AYR18455.1), Bat_MH687942(AYR18448.1), Bat_MH687937(AYR18418.1),
Cluster111
 Ape_MG977449(AWW13551.1), Ape_MG977447(AWW13535.1), Ape_MG977445(AWW13519.1), Ape_MG977444(AWW13511.1), Camel_KF906251(AHN64792.1), Camel_KF906250(AHN64783.1), Camel_KF906249(AHN64774.1), Camel_MN514967(QEY10665.1), Camel_MN514966(QEY10657.1), Camel_MN514965(QEY10649.1), Camel_MN514964(QEY10641.1), Camel_MN514963(QEY10633.1), Camel_MN514962(QEY10625.1), Camel_KT368891(ALA50080.1), Canine_JX860640(AFW97360.1), Canine_KX432213(AQT26498.1), Cow_MH810163(AZU96327.1), Cow_FJ938066(ACT11019.1), Cow_FJ938065(ACT11007.1), Cow_NC_003045(NP_150077.1), Cow_AF220295(AAL40400.1), Cow_KU886219(ANJ04974.1), Cow_EF424618(ABP38267.1), Cow_EF424617(ABP38253.1), Cow_EF424620(ABP38295.1), Cow_MG757142(AVI15044.1), Cow_MG757141(AVI15033.1), Cow_MG757138(AVI15000.1), Cow_MG757140(AVI15022.1), Cow_MG757139(AVI15011.1), Cow_AF391542(AAL57308.1), Cow_AF391541(AAK83356.1), Cow_KX982264(ARD05999.1), Cow_MH043955(AVZ61129.1), Cow_MH043953(AVZ61109.1), Cow_MH043954(AVZ61119.1), Cow_MH043952(AVZ61099.1), Cow_AB354579(BAF75631.1), Cow_FJ938063(ACT10983.1), Cow_EF424616(ABP38243.1), Cow_EF424615(ABP38236.1), Cow_FJ938064(ACT10995.1), Cow_EF424619(ABP38279.1), Cow_DQ811784(ABG89288.1), Cow_KU558923(ANJ04728.1), Cow_KU558922(ANJ04717.1), Human_OC43_AY585228(AAT84354.1), Human_OC43_AY391777(AAR01015.1), Human_OC43_MG197721(AXX83369.1), Human_OC43_MG197720(AXX83363.1), Human_OC43_MG197719(AXX83357.1), Human_OC43_MG197718(AXX83351.1), Human_OC43_MG197722(AXX83375.1), Human_OC43_MG197717(AXX83345.1), Human_OC43_MG197716(AXX83339.1), Human_OC43_KY369907(APU51936.1), Human_OC43_MN306053(QEG03794.1), Human_OC43_MN310476(QEG03803.1), Human_OC43_KY369905(APU51916.1), Human_OC43_KY369906(APU51926.1), Human_OC43_KY983588(ARU07610.1), Human_OC43_KY967356(ARK08635.1), Human_OC43_KY983585(ARU07587.1), Human_OC43_KY967358(ARK08651.1), Human_OC43_KY967359(ARK08661.1), Human_OC43_KY983583(ARU07568.1), Human_OC43_KY967360(ARK08670.1), Human_OC43_KY967361(ARK08679.1), Human_OC43_KY684759(ARA15421.1), Human_OC43_MN306043(QEG03776.1), Human_OC43_MN306042(QEG03767.1), Human_OC43_MN306041(QEG03757.1), Human_OC43_MN310478(QEG03814.1), Human_OC43_MN306036(QEG03740.1), Human_OC43_KF530081(AGT51620.1), Human_OC43_KF530070(AGT51511.1), Human_OC43_KF530069(AGT51501.1), Human_OC43_KF530099(AGT51800.1), Human_OC43_KF530080(AGT51610.1), Human_OC43_KF530072(AGT51531.1), Human_OC43_KF530098(AGT51790.1), Human_OC43_KF530064(AGT51451.1), Human_OC43_KF530063(AGT51441.1), Human_OC43_KF530078(AGT51590.1), Human_OC43_KF530075(AGT51561.1), Human_OC43_KF530084(AGT51650.1), Human_OC43_KF530090(AGT51710.1), Human_OC43_KF530071(AGT51521.1), Human_OC43_KF530074(AGT51551.1), Human_OC43_KF530097(AGT51780.1), Human_OC43_KF530079(AGT51600.1), Human_OC43_KF530095(AGT51760.1), Human_OC43_KF530094(AGT51750.1), Human_OC43_KF530082(AGT51630.1), Human_OC43_KF530067(AGT51481.1), Human_OC43_KF530089(AGT51700.1), Human_OC43_KF530091(AGT51720.1), Human_OC43_KF530096(AGT51770.1), Human_OC43_KF530076(AGT51570.1), Human_OC43_KF530088(AGT51690.1), Human_OC43_KF530061(AGT51422.1), Human_OC43_KF530065(AGT51461.1), Human_OC43_KF530066(AGT51471.1), Human_OC43_KF530073(AGT51541.1), Human_OC43_KF530087(AGT51680.1), Human_OC43_KF530083(AGT51640.1), Human_OC43_KF530077(AGT51580.1), Human_OC43_KF530086(AGT51670.1), Human_OC43_KF530085(AGT51660.1), Human_OC43_KF530060(AGT51412.1), Human_OC43_KF530092(AGT51730.1), Human_OC43_KF530068(AGT51491.1), Human_OC43_KY674920(ARB07433.1), Human_OC43_KY554975(ARE30017.1), Human_OC43_KY554974(ARE30008.1), Human_OC43_KY554973(ARE29999.1), Human_OC43_KY674918(ARB07420.1), Human_OC43_KY674917(ARB07414.1), Human_OC43_KY554972(ARE29990.1), Human_OC43_KJ958219(AIX09807.1), Human_OC43_KJ958218(AIX09799.1), Human_OC43_MG197723(AXX83381.1), Human_OC43_JN129835(AEN19366.1), Human_OC43_JN129834(AEN19358.1), Human_OC43_KU131570(AMK59677.1), Human_OC43_MG197715(AXX83333.1), Human_OC43_MG197714(AXX83327.1), Human_OC43_MG197713(AXX83321.1), Human_OC43_MG197712(AXX83315.1), Human_OC43_MG197711(AXX83309.1), Human_OC43_MG197710(AXX83303.1), Human_OC43_MG197709(AXX83297.1), Human_OC43_AY903459(AAX85669.1), Human_OC43_KP198610(AJC98127.1), Human_OC43_AY903460(AAX85678.1), Human_OC43_KP198611(AJC98135.1), Human_OC43_AY585229(AAT84362.1), Human_OC43_MG977452(AWW13575.1), Human_OC43_MG977451(AWW13566.1), Human_OC43_MN026164(QDH43719.1), Human_OC43_KX538974(AQN78736.1), Human_OC43_KX538973(AQN78728.1), Human_OC43_KX538972(AQN78720.1), Human_OC43_KX538971(AQN78712.1), Human_OC43_KX538970(AQN78704.1), Human_OC43_KX538969(AQN78696.1), Human_OC43_KX538968(AQN78688.1), Human_OC43_KX538967(AQN78680.1), Human_OC43_KX538966(AQN78672.1), Human_OC43_KX538965(AQN78664.1), Human_OC43_KX538979(AQN78776.1), Human_OC43_KX538978(AQN78768.1), Human_OC43_KX538977(AQN78760.1), Human_OC43_KX538976(AQN78752.1), Human_OC43_KX538975(AQN78744.1), Human_OC43_KX538964(AQN78656.1), Human_OC43_MK303619(QBP84704.1), Human_OC43_MK303621(QBP84722.1), Human_OC43_MK303620(QBP84713.1), Human_OC43_MK303625(QBQ01839.1), Human_OC43_MK303624(QBP84749.1), Human_OC43_MK303623(QBP84740.1), Human_OC43_MK303622(QBP84731.1), Human_OC43_KX344031(AOL02453.1), Human_OC43_MF374983(AVR40342.1), Human_OC43_MF374985(AVR40344.1), Human_OC43_MF374984(ATN39872.1), Human_OC43_MH121121(AZP73840.1), Human_OC43_MF314143(AVQ05264.1), Human_OC43_KF923923(AIV41999.1), Human_OC43_KF923922(AIV41993.1), Human_OC43_KF923921(AIV41987.1), Human_OC43_KF923920(AIV41981.1), Human_OC43_KF923919(AIV41975.1), Human_OC43_KF923917(AIV41963.1), Human_OC43_KF923916(AIV41957.1), Human_OC43_KF923915(AIV41951.1), Human_OC43_KF923914(AIV41945.1), Human_OC43_KF923913(AIV41939.1), Human_OC43_KF923912(AIV41933.1), Human_OC43_KF923911(AIV41927.1), Human_OC43_KF923901(AIV41867.1), Human_OC43_KF923910(AIV41921.1), Human_OC43_KF923909(AIV41915.1), Human_OC43_KF923908(AIV41909.1), Human_OC43_KF923907(AIV41903.1), Human_OC43_KF923894(AIV41825.1), Human_OC43_KF923892(AIV41813.1), Human_OC43_KF923891(AIV41807.1), Human_OC43_KF923890(AIV41801.1), Human_OC43_KF923900(AIV41861.1), Human_OC43_KF923899(AIV41855.1), Human_OC43_KF923897(AIV41843.1), Human_OC43_KF923906(AIV41897.1), Human_OC43_KF923898(AIV41849.1), Human_OC43_KF923896(AIV41837.1), Human_OC43_KF923905(AIV41891.1), Human_OC43_KF923893(AIV41819.1), Human_OC43_KF923888(AIV41789.1), Human_OC43_KY014282(ATP16767.1), Human_OC43_KY014281(ATP16757.1), Human_OC43_KF923887(AIV41783.1), Human_OC43_KF923889(AIV41795.1), Human_OC43_KF923886(AIV41777.1), Human_OC43_KF923904(AIV41885.1), Human_OC43_KF923903(AIV41879.1), Human_OC43_KF923902(AIV41873.1), Human_OC43_KF923925(AIV42011.1), Human_OC43_KF923924(AIV42005.1), Human_OC43_KF923895(AIV41831.1), Human_OC43_KF923918(AIV41969.1), Human_4408_FJ938067(ACT11030.1), Human_4408_FJ415324(ACJ35486.1), Deer_FJ425187(ACJ66977.1), Waterbuck_FJ425184(ACJ66946.1), Waterbuck_FJ425185(ACJ66961.1), Waterbuck_FJ425186(ACJ66971.1), Deer_MG518518(AVN88332.1), Deer_FJ425188(ACJ66990.1), Deer_FJ425190(ACJ67012.1), Deer_FJ425189(ACJ67000.1), Antelope_EF424621(ABP38306.1), Rabbit_NC_017083(YP_005454245.1), Rabbit_JN874561(AFE48817.1), Rabbit_JN874560(AFE48805.1), Rabbit_JN874562(AFE48827.1), Rabbit_JN874559(AFE48795.1), Giraffe_EF424622(ABP38313.1), Giraffe_EF424623(ABP38328.1), Horse_EF446615(ABP87990.1), Horse_LC061272(BAS18846.1), Horse_LC061274(BAS18866.1), Horse_LC061273(BAS18856.1), Giraffe_EF424624(ABP38334.1), Alpaca_DQ915164(ABI93999.2), Porcine_DQ011855(AAY68297.1), Porcine_KY419103(ARC95203.1), Porcine_KY419106(ARC95227.1), Porcine_KY419112(ARC95267.1), Porcine_KY419111(ARC95259.1), Porcine_KY419109(ARC95243.1), Porcine_KY419113(ARC95274.1), Porcine_KY419110(ARC95251.1), Porcine_KY419107(ARC95235.1), Porcine_KY419105(ARC95219.1), Porcine_KY419104(ARC95211.1), Porcine_KY994645(AUF40275.1), Porcine_MF083115(AVV64341.1), Cow_U00735(AAA66399.1), Human_OC43_NC_006213(YP_009555241.1),
Cluster112
 Bat_KY799179(ASL24654.1), Bat_NC_022103(YP_008439202.1), Bat_KF430219(AGT21333.1),
Cluster113
 Bat_MK720944(QCX35160.1),
Cluster114
 Avian_KY073748(APD51507.1), Avian_KY073747(APD51499.1), Bat_MN611517(QHA24665.1), Camel_NC_028752(YP_009194639.1), Camel_KT368914(ALA50242.1), Camel_KT368913(ALA50235.1), Camel_KT368916(ALA50256.1), Camel_KT368915(ALA50249.1), Camel_KT368908(ALA50200.1), Camel_KT368896(ALA50116.1), Camel_KT368895(ALA50109.1), Camel_KT368897(ALA50123.1), Camel_KT368901(ALA50151.1), Camel_KT368900(ALA50144.1), Camel_KT368899(ALA50137.1), Camel_KT368898(ALA50130.1), Camel_KT368911(ALA50221.1), Camel_KT368894(ALA50102.1), Camel_KT368910(ALA50214.1), Camel_KT368893(ALA50095.1), Camel_KT368892(ALA50088.1), Camel_KT368912(ALA50228.1), Camel_KT368909(ALA50207.1), Camel_KT368906(ALA50186.1), Camel_KT368905(ALA50179.1), Camel_KT368904(ALA50172.1), Camel_KT368903(ALA50165.1), Camel_KT368902(ALA50158.1), Camel_KU291449(AOG74789.1), Camel_KT253326(AOI28275.1), Camel_KT253328(AOI28291.1), Camel_KT253324(AOI28259.1), Camel_KT253325(AOI28267.1), Camel_KT253327(AOI28283.1), Camel_MF593473(ATI09437.1), Camel_JQ410000(AFI49431.1), Human_229E_NC_002645(NP_073551.1), Human_229E_KY369914(APT69890.1), Human_229E_KY369912(APT69876.1), Human_229E_MN369046(QEO75985.1), Human_229E_KY369909(APT69856.1), Human_229E_KY369908(APT69849.1), Human_229E_KY674914(ARB07392.1), Human_229E_KY621348(ARK08620.1), Human_229E_KY983587(ARU07601.1), Human_229E_KY967357(ARK08642.1), Human_229E_KY684760(ARA15429.1), Human_229E_KY369911(APT69869.1), Human_229E_KY369910(APT69862.1), Human_229E_KY369913(APT69883.1), Human_229E_MN306046(QEG03785.1), Human_229E_KY674919(ARB07425.1), Human_229E_KY996417(ARX11396.1), Human_229E_KF514430(AGT21345.1), Human_229E_KF514433(AGT21367.1), Human_229E_KF514432(AGT21360.1), Human_229E_MF542265(AST12964.1), Human_229E_JX503061(AFR79257.1), Human_229E_KU291448(AOG74783.1), Human_229E_JX503060(AFR79250.1), Camel_KT368907(ALA50193.1),
Cluster115
 Bat_MN065811(QER90704.1),
Cluster116
 Bat_MG916904(QBP43290.1),
Cluster117
 Bat_NC_009020(YP_001039962.1), Bat_MG021452(AVV62537.1), Bat_MG021451(AVV62526.1), Bat_MG596802(AUM60014.1), Bat_KX442564(ASL68941.1), Bat_KX442565(ASL68953.1), Bat_EF065512(ABN10902.1), Bat_EF065511(ABN10893.1), Bat_EF065510(ABN10884.1), Fish_MN611520(QHA24687.1), Fish_MG596803(AUM60024.1), Bat_EF065509(ABN10875.1), Bat_KJ473820(AIA62343.1), Bat_MH002340(AWH65910.1), Bat_MH002341(AWH65921.1), Bat_MH002342(AWH65932.1),
Cluster118
 Murine_NC_026011(YP_009113025.1), Murine_MH687978(AYR18688.1), Murine_MH687977(AYR18679.1), Murine_MH687976(AYR18670.1), Murine_MH687974(AYR18652.1), Murine_MH687973(AYR18643.1), Murine_MH687972(AYR18634.1), Murine_MH687971(AYR18625.1), Murine_MH687969(AYR18607.1), Murine_KM349744(AJA91217.1), Murine_KM349743(AJA91207.1), Murine_KM349742(AJA91196.1), Murine_NC_046954(YP_009755834.1),
Cluster119
 Bat_DQ339101(ABC70719.1), Human_HKU1_MK167038(AZS52618.1), Human_HKU1_KY674941(ARB07599.1), Human_HKU1_KY674942(ARB07608.1), Human_HKU1_KY674943(ARB07617.1), Human_HKU1_NC_006577(YP_173238.1), Human_HKU1_DQ415906(ABD75577.1), Human_HKU1_DQ415905(ABD75569.1), Human_HKU1_DQ415904(ABD75561.1), Human_HKU1_DQ415903(ABD75553.1), Human_HKU1_DQ415902(ABD75545.1), Human_HKU1_DQ415901(ABD75537.1), Human_HKU1_DQ415900(ABD75529.1), Human_HKU1_DQ415899(ABD75521.1), Human_HKU1_DQ415898(ABD75513.1), Human_HKU1_DQ415897(ABD75505.1), Human_HKU1_DQ415896(ABD75497.1), Human_HKU1_DQ415914(ABD75641.1), Human_HKU1_DQ415913(ABD75633.1), Human_HKU1_DQ415912(ABD75625.1), Human_HKU1_DQ415911(ABD75617.1), Human_HKU1_DQ415910(ABD75609.1), Human_HKU1_DQ415909(ABD75601.1), Human_HKU1_DQ415908(ABD75593.1), Human_HKU1_DQ415907(ABD75585.1), Human_HKU1_KF686340(AGW27836.1), Human_HKU1_KF430201(AGT17769.1), Human_HKU1_KF686344(AGW27872.1), Human_HKU1_KF686343(AGW27863.1), Human_HKU1_KF686346(AGW27881.1), Human_HKU1_KF686342(AGW27854.1), Human_HKU1_KF686341(AGW27845.1), Human_HKU1_MH940245(AYN64561.1), Human_HKU1_HM034837(ADN03339.1), Human_HKU1_KT779556(AMN88694.1), Human_HKU1_KT779555(AMN88686.1), Human_HKU1_AY884001(AAX76521.1), Human_HKU1_KY674921(ARB07438.1), Human_HKU1_AY597011(AAT98580.1), Murine_MH687970(AYR18616.1), Murine_MH687968(AYR18599.1),
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