CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster75
Ferret_NC_030292(YP_009256196.1), Ferret_KX512810(ASR18944.1), Ferret_KX512809(ASR18936.1), Ferret_LC119077(BAV31347.1), Ferret_LC215871(BBA21166.1), Civet_KM347965(AKG92639.1),
Cluster76
Avian_JX840411(AFX59325.1), Avian_MK581202(QDQ69120.1), Avian_MK581205(QDQ69159.1), Avian_MK581206(QDQ69172.1), Avian_MF508703(AWR92743.1), Avian_KF853202(AHI85758.1), Avian_KM586818(AKN20488.1), Avian_KR902510(AKV63204.1), Avian_MF882923(ATD12169.1), Avian_MG197727(AXX83281.1), Avian_MN197549(QGR15737.1), Human_IBV_MK142676(QCX41894.1), Avian_NC_048213(YP_009824997.1),
Cluster77
Murine_NC_034972(YP_009380519.1), Murine_KX964649(AQW43021.1),
Cluster78
Avian_EU022526(ABW75137.1), Avian_GQ504725(ADP06516.1), Avian_MH181793(QAT77246.1), Avian_AY319651(AAP92674.1), Avian_KR608272(AMH39304.1),
Cluster79
Avian_MN096598(QEI10559.1),
Cluster80
Avian_MK359255(QCB65092.1), Avian_NC_046965(YP_009755896.1),
Cluster81
Porcine_KP981395(AKA97937.1), Porcine_MF431743(ASR75146.1), Porcine_KX834351(APZ76688.1), Porcine_KX834352(APZ76696.1), Porcine_MH715491(AYU65237.1), Porcine_MH708125(AXP32229.1), Porcine_MH708124(AXP32222.1), Porcine_MH708123(AXP32215.1), Porcine_MF280390(AVR48518.1), Porcine_KY065120(APG38197.1), Porcine_KX443143(AQS99159.2), Porcine_KT266822(AKQ63081.1), Porcine_KY513725(AUG59163.1), Porcine_KY513724(AUG59155.1), Porcine_KU984334(AMW88195.1), Porcine_MG242062(AVZ61081.1), Porcine_KY363868(ATV90807.1), Porcine_KY363867(ATV90792.1), Porcine_KJ567050(AHM88399.1), Porcine_KM012168(AIP90485.1), Porcine_KX118627(AOM53025.1), Porcine_MK355396(QDH76187.1), Porcine_MK572803(QDH76200.1), Porcine_MN249445(QFU80840.1),
Cluster82
Decapod_KX947267(AQS27934.1), shrimp_EU487200(ACA21301.1), shrimp_FJ848675(ACS44778.1), shrimp_FJ848674(ACS44774.1), shrimp_FJ848673(ACS44769.1),
Cluster83
shrimp_NC_010306(YP_001661455.1), shrimp_AF227196(AAK84670.1),
Cluster84
Cow_NC_007447(YP_337907.1), Cow_LC088095(BAU21412.1), Cow_LC088094(BAU21406.1), Goat_NC_034976(YP_009380537.1), Harrisii_MK521914(QBJ04615.1), Horse_MG996765(AWV66922.1), Porcine_NC_022787(YP_008798232.1), Porcine_KM403390(AIU41585.1), Porcine_LT900503(SNT95684.1), Porcine_MH603532(QBK95468.1),
Cluster85
Dolphin_KF793826(AHB63508.1), Dolphin_KF793825(AHB63495.1), Dolphin_KF793824(AHB63481.1), Whale_EU111742(ABW87820.1), Whale_NC_010646(YP_001876437.1), Dolphin_MN690608(QII89019.1), Dolphin_MN690609(QII89033.1), Dolphin_MN690610(QII89047.1), Dolphin_MN690611(QII89061.1),
Cluster86
Canine_KP849472(AKZ66476.1), Feline_FJ938062(ACT10970.1), Feline_FJ938055(ACT10896.1), Feline_FJ938053(ACT10876.1), Feline_JN183883(AEK25521.1), Feline_FJ938056(ACT10906.1), Feline_JN183882(AEK25511.1), Feline_HQ392469(ADO39817.1), Feline_FJ938054(ACT10887.1), Feline_HQ012372(ADL71497.1), Feline_HQ012371(ADL71486.1), Feline_HQ392472(ADO39850.1), Feline_HQ012370(ADL71476.1), Feline_GU553362(ADC35472.1), Feline_GU553361(ADC35461.1), Feline_HQ012369(ADL71466.1), Feline_HQ392471(ADO39839.1), Feline_FJ938060(ACT10948.1), Feline_HQ392470(ADO39828.1), Feline_HQ012368(ADL71455.1), Feline_HQ012367(ADL71446.1), Feline_FJ938058(ACT10927.2), Feline_FJ938057(ACT10916.1), Feline_FJ938052(ACT10865.1), Feline_FJ938059(ACT10937.1), Feline_KY566211(AUG98141.1), Feline_KY566210(AUG98130.1), Feline_KY566209(AUG98119.1), Feline_KY292377(ASB16887.1), Feline_KF530123(AGT52080.1), Feline_DQ848678(ABI14448.1), Feline_FJ938051(ACT10854.1), Feline_MN165107(QDM36987.1), Feline_KX722529(ASU62488.1), Feline_KU215419(AMD11130.1), Feline_MG893511(AXE71621.1), Feline_KU215423(AMD11175.1), Feline_KU215428(AMD11230.1), Feline_KU215427(AMD11219.1), Feline_KU215426(AMD11208.1), Feline_KU215422(AMD11164.1), Feline_KU215421(AMD11153.1), Feline_KU215420(AMD11142.1), Feline_KU215425(AMD11197.1), Feline_KU215424(AMD11186.1), Feline_KX722530(ASU62499.1), Feline_EU186072(ABX60145.1), Feline_KP143511(AJO27013.1), Feline_KP143510(AJO27003.1), Feline_KP143509(AJO26993.1), Feline_KP143508(AJO26983.1), Feline_KP143507(AJO26973.1), Feline_KP143512(AJO27023.1), Feline_MH817484(AYF53093.1),
Cluster87
Canine_JN856008(AEQ61968.1), Porcine_KY406735(ASV45148.1), Porcine_KR270796(AKV62755.1),
Cluster88
Canine_JQ404410(AFG19742.1), Canine_KC175341(AFX81108.1), Canine_KC175340(AFX81098.1), Canine_GQ477367(ADB28907.1), Canine_KP981644(AKA65829.1), Canine_JQ404409(AFG19726.1), Canine_KC175339(AFX81091.1), Canine_KY063618(ASB15758.1), Canine_KY063617(ASB15748.1), Canine_KY063616(ASB15738.1), Feline_NC_002306(YP_004070194.1), Feline_JQ408981(AFH55121.1), Feline_KC461236(AGZ84526.1), Feline_KC461237(AGZ84536.1), Feline_KC461235(AGZ84516.1), Feline_JN634064(AFH58021.1), Feline_DQ010921(AAY32596.1), Feline_GQ152141(ACS44218.1), Feline_JQ408980(AFH55111.1), Human_TGEV_KX900393(ASV64277.1), Human_TGEV_KX900408(ASV64411.1), Human_TGEV_KX900401(ASV64349.1), Human_TGEV_KX900411(ASV64438.1), Human_TGEV_KX900404(ASV64375.1), Human_TGEV_KX900399(ASV64331.1), Human_TGEV_KX900397(ASV64313.1), Human_TGEV_KX900410(ASV64429.1), Human_TGEV_KX900409(ASV64420.1), Human_TGEV_KX900407(ASV64402.1), Human_TGEV_KX900405(ASV64384.1), Human_TGEV_KX900398(ASV64322.1), Human_TGEV_KX900395(ASV64295.1), Human_TGEV_KX900400(ASV64340.1), Human_TGEV_KX900406(ASV64393.1), Human_TGEV_KX900403(ASV64367.1), Human_TGEV_KX900396(ASV64304.1), Human_TGEV_KX900394(ASV64286.1), Human_TGEV_KX900402(ASV64358.1), Human_TGEV_EU074218(ABU49659.1), Porcine_NC_038861(NP_058424.1), Porcine_HQ462571(ADY39740.1), Porcine_DQ201447(ABC72414.1), Porcine_KU729220(AML22777.1), Porcine_KX499468(AQT01349.1), Porcine_KT696544(AMB66488.1), Porcine_FJ755618(ACN71196.1), Porcine_KC962433(AGM75126.1), Porcine_KP202848(AKA60054.1), Porcine_KX083668(APQ31244.1), Human_TGEV_AY587882(AAT00645.1), Feline_AY994055(AAY16375.1), Porcine_DQ811785(ABG89301.1), Porcine_DQ811786(ABG89306.1), Porcine_DQ811787(ABG89317.1), Porcine_DQ811788(ABG89325.1), Porcine_DQ811789(ABG89335.1), Porcine_JN624756(AFA51944.1),
Cluster89
Ferret_NC_030292(YP_009256197.1), Ferret_KX512810(ASR18946.1), Ferret_KX512809(ASR18938.1), Ferret_LC119077(BAV31349.1), Ferret_LC215871(BBA21168.1), Civet_KM347965(AKG92640.1),
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