CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster45
Dolphin_KF793826(AHB63507.1), Dolphin_KF793825(AHB63494.1), Dolphin_KF793824(AHB63480.1),
Cluster46
Fish_MH938449(AZF86123.1), Fish_MH938450(AZF86129.1), Bat_NC_046964(YP_009755889.1),
Cluster47
Avian_JX897900(AGC01541.1), Avian_NC_010800(YP_001941164.2), Avian_GQ427173(ACV87243.1), Avian_GQ427174(ACV87255.1), Avian_GQ427176(ACV87277.1), Avian_GQ427175(ACV87266.1), Avian_EU022525(ABW75124.1), Avian_EU095850(ABW81426.1), Avian_KC008600(AGK85497.1), Avian_KU900741(ARS22438.1), Avian_KU900738(ARS22399.1), Avian_KU900742(ARS22439.1), Avian_KU900743(ARS22458.1), Avian_JF732903(AFH35028.1), Avian_KU317090(ANI87710.1), Avian_KU900744(ARS22468.1), Avian_KU900740(ARS22428.1), Avian_KU900739(ARS22418.1), Avian_GQ504724(ADP06506.1), Avian_GQ504725(ADP06517.1), Avian_FJ904713(ADA83476.1), Avian_FJ904723(ADA83576.1), Avian_FJ904722(ADA83566.1), Avian_FJ904721(ADA83556.1), Avian_FJ904720(ADA83546.1), Avian_MK728875(QCE31531.1), Avian_MK937830(QDA76308.1), Avian_MG763935(AVX27610.1), Avian_MK217375(QDA76245.1), Avian_MK937828(QDA76290.1), Avian_FJ888351(ACQ55228.1), Avian_GQ504723(ADP06493.1), Avian_GQ504722(ADP06482.1), Avian_MK581208(QDQ69210.1), Avian_MK581207(QDQ69197.1), Avian_MK581202(QDQ69132.1), Avian_MK581201(QDQ69119.1), Avian_MK581200(QDQ69106.1), Avian_MK581205(QDQ69171.1), Avian_MK581204(QDQ69158.1), Avian_MK581206(QDQ69184.1), Avian_MK581203(QDQ69145.1), Avian_KP780179(AKV60428.1), Avian_KY776700(AVI69443.1), Avian_KY776701(AVI69452.1), Avian_MK644086(QCQ81100.1), Avian_FJ904716(ADA83506.1), Avian_FJ904719(ADA83536.1), Avian_FJ904718(ADA83526.1), Avian_FJ904717(ADA83516.1), Avian_JQ088078(AFJ11175.1), Avian_KU356856(ANI21148.1), Avian_KX219795(APV46129.1), Avian_KJ435285(AHX26162.1), Avian_KJ435284(AHX26153.1), Avian_KP118886(AJT47895.1), Avian_KJ435283(AHX26144.1), Avian_KJ435286(AHX26171.1), Avian_KP118885(AJT47886.1), Avian_KP118884(AJT47877.1), Avian_KJ425512(AHX26135.1), Avian_KJ425511(AHX26126.1), Avian_KJ425510(AHX26117.1), Avian_KP118893(AJT47958.1), Avian_JF330899(ADY62550.1), Avian_KX252791(APY26727.1), Avian_KP118888(AJT47913.1), Avian_KP118892(AJT47949.1), Avian_KX252784(APY23586.1), Avian_KX259256(AQD20745.1), Avian_KX302862(APZ73669.1), Avian_KX302873(APZ73768.1), Avian_KP036505(AJP16738.1), Avian_KP868573(ALC78746.1), Avian_MK937832(QDA76326.1), Avian_KJ425509(AHX26108.1), Avian_KC506155(AGJ98436.1), Avian_KC136209(AGE13890.1), Avian_KX364296(ARB66161.1), Avian_KJ425508(AHX26099.1), Avian_KX275390(APZ73806.1), Avian_KP036502(AJP16711.1), Avian_KJ425507(AHX26090.1), Avian_KP118891(AJT47940.1), Avian_KJ425506(AHX26081.1), Avian_KP868572(ALC78745.1), Avian_KJ425505(AHX26072.1), Avian_KJ425504(AHX26063.1), Avian_KJ425503(AHX26054.1), Avian_KX302869(APZ73732.1), Avian_JF274479(AEL12219.2), Avian_KX252773(APY23487.1), Avian_KJ425502(AHX26045.1), Avian_KJ425501(AHX26036.1), Avian_KJ425500(AHX26027.1), Avian_KJ425499(AHX26018.1), Avian_KP118880(AJT47841.1), Avian_KJ425498(AHX26009.1), Avian_KP036504(AJP16729.1), Avian_KX252775(APY23505.1), Avian_KJ425497(AHX26000.1), Avian_KX252774(APY23496.1), Avian_KP118890(AJT47931.1), Avian_KP118889(AJT47922.1), Avian_KJ425496(AHX25991.1), Avian_KX247128(APW85775.1), Avian_MG448607(AVI69518.1), Avian_KP118883(AJT47868.1), Avian_KJ425495(AHX25982.1), Avian_KJ425494(AHX25973.1), Avian_KP036503(AJP16720.1), Avian_KJ425493(AHX25964.1), Avian_KJ425492(AHX25955.1), Avian_KJ425491(AHX25946.1), Avian_KJ425490(AHX25937.1), Avian_KJ425489(AHX25928.1), Avian_KJ425488(AHX25919.1), Avian_KJ425487(AHX25910.1), Avian_KX236016(APY26878.1), Avian_KP343691(AKJ66252.1), Avian_JX195177(AFQ94230.1), Avian_JX195178(AFQ94239.1), Avian_KJ425486(AHX25901.1), Avian_KJ425485(AHX25892.1), Avian_JF828981(AEP84744.1), Avian_KP118881(AJT47850.1), Avian_KP118882(AJT47859.1), Avian_FJ904715(ADA83496.1), Avian_FJ904714(ADA83486.1), Avian_KR231009(ALH21109.1), Avian_GQ504721(ADP06472.2), Avian_GQ504720(ADP06460.1), Avian_GU393337(ADV71811.1), Avian_GU393336(ADV71798.1), Avian_GU393335(ADV71787.1), Avian_GU393334(ADV71774.1), Avian_GU393333(ADV71761.1), Avian_GU393332(ADV71748.1), Avian_GU393331(ADV71735.1), Avian_EU714028(ACH72793.1), Avian_JF893452(AEJ80236.2), Avian_KF460437(AIG54293.1), Avian_KF931628(AIG54294.1), Avian_MH878976(AYS76103.1), Avian_MF421320(ASM61971.1), Avian_MF421319(ASM61958.1), Avian_KT852992(AMD40262.1), Avian_KY421672(ATJ01091.1), Avian_KF574761(AGZ20159.1), Avian_KY421673(ATJ01101.1), Avian_EU714029(ACH72803.1), Avian_KR608272(AMH39303.1), Avian_JQ977698(AFQ31008.1), Avian_MF924725(AYG86371.1), Avian_KR902510(AKV63203.1), Avian_KJ135013(AHN54755.1), Avian_MH539772(AZP23939.1), Avian_MH539771(AZP23928.1), Avian_KY805846(ARS23151.1), Avian_KY805845(ARS23137.1), Avian_MN512438(QGM12427.1), Avian_MN512437(QGM12414.1), Avian_MN512436(QGM12402.1), Avian_MN512435(QGM12389.1), Avian_MN512434(QGM12376.1), Avian_MG738155(QAA92385.1), Avian_HQ850618(AEB00724.1), Avian_HQ848267(AEB00705.1), Avian_KY047602(API80968.1), Avian_KT886454(AMO03290.1), Avian_MG021194(AXR85430.1), Avian_MK878536(QCX19618.1), Avian_MN599049(QGX07409.1), Avian_MN566147(QHB80052.1), Avian_HM245923(ADI54944.1), Avian_HM245924(ADI54954.1), Avian_KT736032(AMK51947.1), Avian_MK329221(QDO71785.1), Avian_KP662631(AKC34132.1), Avian_KF668605(AHB78798.1), Avian_KJ128295(AHN49808.1), Avian_KT736031(AMK51937.1), Avian_KF663560(AHB73998.1), Avian_KF663559(AHB73988.1), Avian_MK309398(QDM02500.1), Avian_KU361188(ANO81452.1), Avian_KU361187(ANO81441.1), Avian_MF924724(AYG86358.1), Avian_KT203557(ALE71329.1), Avian_KX272465(APY20692.1), Avian_LN610099(CEK09107.1), Avian_KR822424(ALQ43513.1), Avian_JF705860(AEO86767.1), Avian_NC_001451(NP_066134.1), Avian_AY646283(AAT70770.1), Avian_AY641576(AAT70073.1), Avian_DQ001339(AAY24431.1), Avian_DQ001338(AAY24421.1), Avian_AY319651(AAP92673.1), Avian_KY626045(ARJ35790.1), Avian_KY933090(ATE90978.1), Avian_MH021175(AXB38893.1), Avian_KY626044(ARJ35781.1), Avian_KY933089(ATE90966.1), Avian_MG913342(AXQ05190.1), Avian_MG913343(AXQ05200.1), Avian_KX258195(ANY58999.1), Human_IBV_FJ807652(ACO37564.1), Human_IBV_KF696629(AHB79522.1), Human_IBV_EU637854(ACC94325.1), Human_IBV_EU418976(ACB59371.1), Human_IBV_EU418975(ACB59361.1), Human_IBV_KF377577(AGY56139.1), Human_IBV_AY514485(AAS00078.1), Human_IBV_FN430414(CAZ86697.1), Human_IBV_MH779859(AYA44719.1), Human_IBV_MH779858(AYA44709.1), Human_IBV_MH779857(AYA44699.1), Human_IBV_MH779856(AYA44689.1), Human_IBV_MH779860(AYA44729.1), Human_IBV_DQ646405(ACF74906.1), Avian_JF330898(ADY62541.1), Avian_KX266757(AOC59722.1), Avian_MN128086(QIV13697.1), Avian_MN128086(QIV13698.1), Avian_MN128087(QIV13707.1), Avian_MN128087(QIV13708.1), Avian_MN128088(QIV13717.1), Avian_MN128088(QIV13718.1), Avian_MN509588(QJS39671.1), Avian_MN509589(QJS39680.1), Avian_MN517816(QJS39689.1), Avian_MN517817(QJS39698.1), Avian_MN531554(QJS39707.1), Avian_MN531555(QJS39716.1), Avian_MN531556(QJS39725.1),
Cluster48
Avian_GQ427173(ACV87245.1), Avian_KU900741(ARS22429.1), Avian_KU900743(ARS22449.1), Avian_KU900744(ARS22459.1), Avian_KU900740(ARS22419.1), Avian_KU900739(ARS22409.1), Avian_KP868573(ALC78755.1), Avian_KT946798(AMR60478.1), Avian_FJ904714(ADA83485.1), Avian_GU393338(ADV71823.1), Avian_GU393334(ADV71773.1), Avian_GU393331(ADV71736.1), Avian_JQ977697(AFQ30998.1), Avian_MG517474(AYD78147.1), Avian_KF663561(AHB74008.1), Avian_EU022525(ABW75135.1), Avian_EU095850(ABW81436.1), Human_IBV_EU418975(ACB59360.1), Human_IBV_EU418976(ACB59370.1), Avian_FJ904713(ADA83475.1), Avian_FJ904715(ADA83495.1), Avian_FJ904716(ADA83505.1), Avian_FJ904717(ADA83515.1), Avian_FJ904718(ADA83525.1), Avian_FJ904719(ADA83535.1), Avian_FJ904722(ADA83565.1), Avian_GQ427174(ACV87256.1), Avian_GQ427175(ACV87267.1), Avian_GQ427176(ACV87278.1), Avian_GQ504720(ADP06461.1), Avian_GQ504721(ADP06470.2), Avian_GQ504722(ADP06483.1), Avian_GU393332(ADV71749.1), Avian_GU393333(ADV71762.1), Avian_GU393336(ADV71799.1), Avian_GU393338(ADV71824.1), Avian_JQ977698(AFQ31009.1), Avian_KC008600(AGK85498.1), Human_IBV_KF696629(AHB79531.1), Avian_KM213963(AIY51827.1), Avian_KP662631(AKC34131.1), Avian_LN610099(CEK09106.1), Avian_MF924724(AYG86346.1), Avian_MF924725(AYG86359.1), Avian_MK581200(QDQ69094.1), Avian_MK581201(QDQ69107.1), Avian_MK581203(QDQ69133.1), Avian_MK581204(QDQ69146.1), Avian_MK581207(QDQ69185.1), Avian_MK581208(QDQ69198.1), Avian_MK878536(QCX19617.1), Avian_MN512434(QGM12377.1), Avian_MN512435(QGM12390.1), Avian_MN512436(QGM12403.1), Avian_MN512438(QGM12428.1), Avian_MN566147(QHB80053.1), Avian_MN599049(QGX07408.1), Avian_NC_001451(NP_040829.1), Avian_NC_010800(YP_001941165.1), Avian_MN262644(QIM61638.1), Avian_MN262644(QIM61639.1), Avian_MN307884(QJE49265.1), Avian_MN509587(QJS39662.1), Avian_MN794188(QJR96933.1), Avian_NC_048213(YP_009824996.1),
Cluster49
Fish_MH938448(AZF86117.1),
Cluster50
Bat_MH687962(AYR18560.1),
Cluster51
Bat_MK720944(QCX35159.1), Bat_NC_028833(YP_009201729.1), Bat_KJ473809(AIA62264.1),
Cluster52
Bat_MK472071(QGX41968.1), Bat_MK472069(QGX41962.1), Bat_MK472068(QGX41956.1),
Cluster53
Avian_GQ504724(ADP06505.1), Avian_FJ904723(ADA83575.1), Avian_FJ904721(ADA83555.1), Avian_FJ904720(ADA83545.1), Avian_MK728875(QCE31532.1), Avian_EU817497(ACJ12833.1), Avian_GQ504723(ADP06494.1), Avian_JQ088078(AFJ11174.1), Avian_KP868572(ALC78737.1), Avian_JF828980(AEP84734.1), Avian_GU393337(ADV71812.1), Avian_MH539772(AZP23940.1), Avian_MH539771(AZP23929.1), Avian_KY805846(ARS23150.1), Avian_MN512437(QGM12415.1), Avian_MG738154(QAA92375.1), Avian_AY851295(AAW33784.1), Human_IBV_DQ834384(ABI26421.1), Human_IBV_AY514485(AAS00079.1), Human_IBV_FN430414(CAZ86698.1), Human_IBV_MH779859(AYA44720.1), Human_IBV_MH779858(AYA44710.1), Human_IBV_MH779857(AYA44700.1), Human_IBV_MH779856(AYA44690.1), Human_IBV_MH779860(AYA44730.1), Avian_JF732903(AFH35021.1), Avian_KF460437(AIG54282.1), Avian_KF931628(AIG54304.1), Avian_MN307884(QJE49264.1),
Cluster54
Avian_MK359255(QCB65096.1), Avian_NC_046965(YP_009755895.1),
Cluster55
Murine_NC_035191(YP_009389424.1), Murine_NC_048211(YP_009824973.1),
Cluster56
Avian_NC_011550(YP_002308505.1), Avian_MG812378(AWV67133.1), Avian_MG812376(AWV67115.1), Avian_MG812375(AWV67106.1), Avian_MG812377(AWV67124.1), Avian_NC_016992(YP_005352845.1), Avian_JQ065045(AFD29208.1), Avian_MH532440(AXP20280.1), Avian_LC364345(BBC54851.1), Avian_LC364346(BBC54860.1), Avian_NC_016993(YP_005352853.1), Avian_JQ065046(AFD29216.1), Porcine_NC_016990(YP_005352830.1), Porcine_NC_039208(YP_009513020.1), Porcine_KJ769231(AIH06856.1), Porcine_KR265863(AML40887.1), Porcine_KR265862(AML40880.1), Porcine_KR265858(AML40852.1), Porcine_KR265861(AML40873.1), Porcine_KR265860(AML40866.1), Porcine_KR265855(AML40831.1), Porcine_KR265854(AML40824.1), Porcine_KR265847(AML40775.1), Porcine_KR265864(AML40894.1), Porcine_KR265848(AML40782.1), Porcine_KR265859(AML40859.1), Porcine_KR265853(AML40817.1), Porcine_KR265850(AML40796.1), Porcine_KR265849(AML40789.1), Porcine_KR265865(AML40901.1), Porcine_KR265851(AML40803.1), Porcine_KR265852(AML40810.1), Porcine_KR265857(AML40845.1), Porcine_KR265856(AML40838.1), Porcine_KP981395(AKA97936.1), Porcine_KR150443(AML40603.1), Porcine_MK005882(QCO76962.1), Porcine_MF041982(AUH28256.1), Porcine_MF431743(ASR75147.1), Porcine_KX022605(ANI85845.1), Porcine_KX022604(ANI85838.1), Porcine_KX022603(ANI85831.1), Porcine_KX022602(ANI85824.1), Porcine_KX834351(APZ76689.1), Porcine_KX834352(APZ76697.1), Porcine_KU051649(AMN91669.1), Porcine_KU051641(AMN91620.1), Porcine_KU981059(ANA78442.1), Porcine_KU981061(ANA78456.1), Porcine_KU981062(ANA78463.1), Porcine_KU981060(ANA78449.1), Porcine_MF431742(ASR75138.1), Porcine_KU665558(AML83915.1), Porcine_MF280390(AVR48517.1), Porcine_KY065120(APG38196.1), Porcine_MK330605(QDP14517.1), Porcine_MF642325(AWV96586.1), Porcine_MF642324(AWV96579.1), Porcine_MF642323(AWV96572.1), Porcine_MF642322(AWV96565.1), Porcine_KT021234(ALD83755.1), Porcine_KT266822(AKQ63082.1), Porcine_KY513725(AUG59162.1), Porcine_KY513724(AUG59154.1), Porcine_KM820765(AIT11906.1), Porcine_KU984334(AMW88196.1), Porcine_KR131621(ALA13744.1), Porcine_KY926512(ASS83085.1), Porcine_MG837130(AWG96864.1), Porcine_MG837131(AWG96871.1), Porcine_KY364365(ARJ31773.1), Porcine_KY354364(AQT34135.1), Porcine_KY354363(AQT34129.1), Porcine_KP757892(AKC54441.1), Porcine_KT336560(ALS54085.1), Porcine_MG832584(AYP31077.1), Porcine_MF095123(ASY98686.1), Porcine_MG242062(AVZ61080.1), Porcine_KP757891(AKC54434.1), Porcine_KY363868(ATV90806.1), Porcine_KY363867(ATV90795.1), Porcine_KP757890(AKC54427.1), Porcine_KY293678(ASK86340.1), Porcine_KY293677(ASK86333.1), Porcine_LC260044(BBA66346.1), Porcine_LC260043(BBA66339.1), Porcine_LC260042(BBA66332.1), Porcine_LC260041(BBA66325.1), Porcine_LC260045(BAZ95608.1), Porcine_LC260040(BBA66318.1), Porcine_LC260039(BBA66311.1), Porcine_LC260038(BBA66304.1), Porcine_KJ567050(AHM88398.1), Porcine_KJ584356(AIA60979.1), Porcine_KJ584358(AIA60993.1), Porcine_KJ462462(AHN16219.1), Porcine_KT381613(ALJ32184.1), Porcine_KJ584359(AIA61000.1), Porcine_KM012168(AIP90484.1), Porcine_KJ620016(AIA99517.1), Porcine_KJ584357(AIA60986.1), Porcine_KJ569769(AHN16226.1), Porcine_KJ584355(AIA60972.1), Porcine_KJ601780(AIB07806.1), Porcine_KJ601779(AIB07799.1), Porcine_KJ601778(AIB07792.1), Porcine_KJ601777(AIB07791.1), Porcine_KJ481931(AHL45013.1), Porcine_LC216915(BAY00729.1), Porcine_LC216914(BAY00722.1), Avian_FJ376622(ACJ12061.1), Porcine_JQ065043(AFD29193.2), Porcine_KX118627(AOM53026.1), Porcine_MF948005(ATJ00129.1), Porcine_MH025762(QBQ34480.1), Porcine_MH025763(QBQ34487.1), Porcine_MH025764(QBQ34494.1), Porcine_MN025260(QHI08610.1), Porcine_MN249445(QFU80839.1),
Cluster57
Avian_NC_011549(YP_002308496.1), Avian_NC_016991(YP_005352837.1), Avian_JQ065044(AFD29200.1), Avian_LC364344(BBC54841.1), Avian_LC364343(BBC54831.1), Avian_LC364342(BBC54821.1), Porcine_JQ065042(AFD29186.1),
Cluster58
Avian_NC_016994(YP_005352862.1), Avian_JQ065047(AFD29225.1),
Cluster59
Avian_NC_011547(YP_002308478.1), Avian_FJ376620(ACJ12043.1), Avian_FJ376619(ACJ12034.1), Avian_FJ376621(ACJ12052.1), Porcine_MK211169(QDF21517.1), Porcine_MK330604(QDP14510.1), Porcine_MK355396(QDH76186.1), Porcine_MK572803(QDH76194.1), Porcine_MK993519(QGZ00524.1),
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