CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster555
 Human_TGEV_KX900408(ASV64412.1), Human_TGEV_KX900411(ASV64439.1), Human_TGEV_KX900404(ASV64376.1), Human_TGEV_KX900410(ASV64430.1), Human_TGEV_KX900409(ASV64421.1), Human_TGEV_KX900407(ASV64403.1), Human_TGEV_KX900405(ASV64385.1), Human_TGEV_KX900406(ASV64394.1), Human_TGEV_KX900403(ASV64368.1), Porcine_DQ811785(ABG89296.1), Porcine_DQ811786(ABG89302.1),
Cluster556
 Avian_NC_025217(YP_009072444.1), Avian_KF636752(AIL94220.1),
Cluster557
 Human_SARS_DQ182595(ABA02252.1),
Cluster558
 Canine_JQ404410(AFG19740.1), Canine_KC175341(AFX81110.1), Canine_KC175340(AFX81100.1), Canine_GQ477367(ADB28909.1), Canine_JQ404409(AFG19733.1), Canine_KC175339(AFX81093.1), Canine_KY063617(ASB15750.1), Canine_KY063616(ASB15740.1), Canine_KP849472(AKZ66473.1), Feline_NC_002306(YP_004070196.1), Feline_KC461236(AGZ84528.1), Feline_KC461237(AGZ84538.1), Feline_KC461235(AGZ84518.1), Feline_GQ152141(ACS44220.1), Feline_JQ408980(AFH55113.1), Feline_AY994055(AAY16377.1),
Cluster559
 Ape_GU553365(ADC35522.1), Bat_KU973692(ARO76392.1), Bat_KF569996(AHX37568.1), Bat_MG772934(AVP78051.1), Bat_MG772933(AVP78040.1), Bat_DQ071615(AAZ67061.1), Bat_DQ412043(AAZ67042.1), Bat_DQ412042(AAZ67038.1), Bat_KU182964(ANA96037.1), Feline_AY572038(AAU04674.1), Feline_AY572035(AAU04660.1), Feline_AY572034(AAU04644.1), Human_SARS_JX163926(AFR58725.1), Human_SARS_JX163928(AFR58753.1), Human_SARS_JX163927(AFR58739.1), Human_SARS_AY274119(AAP41049.1), Human_SARS_DQ182595(ABA02279.1), Human_SARS_FJ882938(ACZ71943.1), Human_SARS_KF514423(AGT21330.1), Human_SARS_KF514396(AGT20925.1), Human_SARS_KF514418(AGT21255.1), Human_SARS_KF514409(AGT21120.1), Human_SARS_KF514397(AGT20940.1), Human_SARS_KF514408(AGT21105.1), Human_SARS_KF514394(AGT20895.1), Human_SARS_KF514419(AGT21270.1), Human_SARS_KF514404(AGT21045.1), Human_SARS_KF514400(AGT20985.1), Human_SARS_KF514415(AGT21210.1), Human_SARS_KF514413(AGT21180.1), Human_SARS_KF514388(AGT20805.1), Human_SARS_KF514392(AGT20865.1), Human_SARS_KF514422(AGT21315.1), Human_SARS_KF514421(AGT21300.1), Human_SARS_KF514399(AGT20970.1), Human_SARS_KF514398(AGT20955.1), Human_SARS_FJ882947(ACZ72075.1), Human_SARS_FJ882933(ACZ71868.1), Human_SARS_FJ882934(ACZ71883.1), Human_SARS_FJ882949(ACZ72105.1), Human_SARS_FJ882935(ACZ71898.1), Human_SARS_FJ882936(ACZ71913.1), Human_SARS_FJ882937(ACZ71928.1), Human_SARS_FJ882939(ACZ71958.1), Human_SARS_FJ882932(ACZ71853.1), Human_SARS_FJ882946(ACZ72062.1), Human_SARS_FJ882927(ACZ71779.1), Human_SARS_JF292921(AEA11010.1), Human_SARS_AY463060(AAR86787.1), Human_SARS_AY463059(AAR86797.1), Human_SARS_FJ882963(ACQ82737.1), Human_SARS_FJ882957(ACZ72222.1), Human_SARS_FJ882958(ACZ72237.1), Human_SARS_FJ882945(ACZ72047.1), Human_SARS_FJ882961(ACZ72281.1), Human_SARS_FJ882952(ACZ72148.1), Human_SARS_FJ882948(ACZ72090.1), Human_SARS_FJ882943(ACZ72017.1), Human_SARS_FJ882959(ACZ72251.1), Human_SARS_FJ882942(ACZ72002.1), Human_SARS_FJ882953(ACZ72163.1), Human_SARS_FJ882951(ACZ72133.1), Human_SARS_FJ882962(ACZ72295.1), Human_SARS_JQ316196(AFD56985.1), Human_SARS_GU553364(ADC35508.1), Human_SARS_GU553363(ADC35494.1), Human_SARS_JN854286(AFK10266.1), Human_SARS_FJ882926(ACZ71764.1), Human_SARS_FJ882930(ACZ71823.1), Human_SARS_KF514410(AGT21135.1), Human_SARS_KF514389(AGT20820.1), Human_SARS_KF514395(AGT20910.1), Human_SARS_KF514414(AGT21195.1), Human_SARS_KF514420(AGT21285.1), Human_SARS_KF514391(AGT20850.1), Human_SARS_KF514416(AGT21225.1), Human_SARS_KF514407(AGT21090.1), Human_SARS_KF514402(AGT21015.1), Human_SARS_KF514401(AGT21000.1), Human_SARS_KF514390(AGT20835.1), Human_SARS_KF514417(AGT21240.1), Human_SARS_KF514405(AGT21060.1), Human_SARS_KF514403(AGT21030.1), Human_SARS_KF514393(AGT20880.1), Human_SARS_KF514412(AGT21165.1), Human_SARS_KF514411(AGT21150.1), Human_SARS_KF514406(AGT21075.1), Human_SARS_FJ882941(ACZ71988.1), Human_SARS_FJ882950(ACZ72119.1), Human_SARS_FJ882956(ACZ72207.1), Human_SARS_FJ882954(ACZ72177.1), Human_SARS_FJ882940(ACZ71973.1), Human_SARS_FJ882960(ACZ72266.1), Human_SARS_FJ882944(ACZ72032.1), Human_SARS_FJ882955(ACZ72192.1), Human_SARS_FJ882931(ACZ71838.1), Human_SARS_FJ882929(ACZ71808.1), Human_SARS_FJ882928(ACZ71794.1), Human_SARS_JX162087(AFM43878.1), Human_SARS_JF292922(AEA11025.1), Human_SARS_AY686863(AAV91642.1), Murine_JF292915(AEA10920.1), Murine_JF292914(AEA10905.1), Murine_JF292913(AEA10890.1), Murine_JF292912(AEA10875.1), Murine_JF292911(AEA10860.1), Murine_JF292920(AEA10995.1), Murine_JF292919(AEA10980.1), Murine_JF292918(AEA10965.1), Murine_JF292917(AEA10950.1), Murine_JF292916(AEA10935.1), Murine_JF292910(AEA10845.1), Murine_JF292909(AEA10830.1), Murine_JF292908(AEA10815.1), Murine_JF292907(AEA10800.1), Murine_HQ890541(AEA10635.1), Murine_HQ890546(AEA10710.1), Murine_HQ890545(AEA10695.1), Murine_HQ890544(AEA10680.1), Murine_HQ890543(AEA10665.1), Murine_HQ890542(AEA10650.1), Murine_JF292903(AEA10740.1), Murine_JF292902(AEA10725.1), Murine_HQ890533(AEA10515.1), Murine_HQ890532(AEA10500.1), Murine_HQ890531(AEA10485.1), Murine_JF292906(AEA10785.1), Murine_JF292905(AEA10770.1), Murine_JF292904(AEA10755.1), Murine_HQ890540(AEA10620.1), Murine_HQ890539(AEA10605.1), Murine_HQ890530(AEA10470.1), Murine_HQ890529(AEA10455.1), Murine_HQ890528(AEA10440.1), Murine_HQ890527(AEA10425.1), Murine_HQ890526(AEA10410.1), Murine_HQ890538(AEA10590.1), Murine_HQ890537(AEA10575.1), Murine_HQ890536(AEA10560.1), Murine_HQ890535(AEA10545.1), Murine_HQ890534(AEA10530.1), Civet_AY686864(AAV49741.1), Bat_FJ588686(ACU31041.1), Human_SARS_JX163923(AFR58683.1), Human_SARS_JX163924(AFR58697.1), Human_SARS_JX163925(AFR58711.1), Bat_KJ473811(AIA62287.1),
Cluster560
 Feline_JQ408981(AFH55122.1), Feline_FJ938062(ACT10971.1), Feline_FJ938055(ACT10897.1), Feline_FJ938053(ACT10877.1), Feline_JN183883(AEK25522.1), Feline_FJ938056(ACT10907.1), Feline_JN183882(AEK25512.1), Feline_HQ392469(ADO39818.1), Feline_HQ012372(ADL71498.1), Feline_HQ012371(ADL71487.1), Feline_HQ392472(ADO39851.1), Feline_FJ938061(ACT10960.1), Feline_HQ012370(ADL71477.1), Feline_GU553362(ADC35473.1), Feline_GU553361(ADC35462.1), Feline_HQ012369(ADL71467.1), Feline_HQ392471(ADO39840.1), Feline_FJ938060(ACT10949.1), Feline_HQ392470(ADO39829.1), Feline_HQ012368(ADL71456.1), Feline_HQ012367(ADL71447.1), Feline_FJ938058(ACT10928.1), Feline_FJ938057(ACT10917.1), Feline_FJ938052(ACT10866.1), Feline_FJ938059(ACT10938.1), Feline_KY566211(AUG98142.1), Feline_KY566210(AUG98131.1), Feline_KY566209(AUG98120.1), Feline_KY292377(ASB16888.1), Feline_KF530123(AGT52081.1), Feline_FJ938051(ACT10855.1), Feline_MN165107(QDM36988.1), Feline_KX722529(ASU62489.1), Feline_KU215419(AMD11131.1), Feline_KU215423(AMD11176.1), Feline_KU215428(AMD11231.1), Feline_KU215427(AMD11220.1), Feline_KU215426(AMD11209.1), Feline_KU215422(AMD11165.1), Feline_KU215421(AMD11154.1), Feline_KU215420(AMD11143.1), Feline_KU215425(AMD11198.1), Feline_KU215424(AMD11187.1), Feline_KX722530(ASU62500.1), Feline_KP143511(AJO27014.1), Feline_KP143510(AJO27004.1), Feline_KP143509(AJO26994.1), Feline_KP143508(AJO26984.1), Feline_KP143507(AJO26974.1), Feline_KP143512(AJO27024.1), Feline_MH817484(AYF53094.1),
Cluster561
 Avian_MG812378(AWV67141.1), Avian_MG812377(AWV67132.1), Avian_NC_016992(YP_005352852.1), Avian_JQ065045(AFD29215.1),
Cluster562
 Avian_KM454473(AKF17733.1), Avian_NC_048214(YP_009825017.1),
Cluster563
 Avian_MK359255(QCB65094.1), Avian_NC_046965(YP_009755905.1),
Cluster564
 Avian_LC364344(BBC54848.1), Avian_LC364343(BBC54838.1), Avian_LC364342(BBC54828.1),
Cluster565
 Human_SARS_DQ182595(ABA02267.1),
Cluster566
 Avian_NC_016995(YP_005352879.1), Avian_JQ065048(AFD29242.1),
Cluster567
 Avian_MK581201(QDQ69114.1), Avian_MK581200(QDQ69101.1), Avian_GU393335(ADV71779.1), Avian_GU393332(ADV71741.1), Avian_GU393331(ADV71728.1), Avian_KF460437(AIG54289.1), Avian_KF931628(AIG54300.1), Avian_MF421320(ASM61979.1), Avian_MF421319(ASM61966.1), Avian_KY805846(ARS23158.1), Avian_KY805845(ARS23145.1), Avian_MK878536(QCX19625.1), Avian_KR822424(ALQ43521.1),
Cluster568
 Canine_JX860640(AFW97362.1), Canine_KX432213(AQT26500.1), Cow_MH043953(AVZ61111.1), Cow_AB354579(BAF75633.1), Human_4408_FJ938067(ACT11032.1), Human_4408_FJ415324(ACJ35491.1), Deer_MG518518(AVN88337.1),
Cluster569
 Avian_MK359255(QCB65103.1), Avian_NC_046965(YP_009755906.1),
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