CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster600
 Human_TGEV_KX900396(ASV64305.1),
Cluster601
 Feline_JN634064(AFH58019.1),
Cluster602
 Avian_MK359255(QCB65099.1), Avian_NC_046965(YP_009755899.1),
Cluster603
 Ape_GU553365(ADC35518.1), Bat_KU973692(ARO76388.1), Bat_KT444582(ALK02465.1), Bat_KF569996(AHX37564.1), Bat_KP886809(AKZ19093.1), Bat_KP886808(AKZ19082.1), Bat_KF367457(AGZ48839.1), Bat_KC881005(AGZ48813.1), Bat_KC881006(AGZ48825.1), Bat_KY417152(ATO98238.1), Bat_KY417151(ATO98226.1), Bat_KY417150(ATO98213.1), Bat_KY417149(ATO98200.1), Bat_KY417148(ATO98188.1), Bat_KY417147(ATO98176.1), Bat_KY417146(ATO98164.1), Bat_KY417144(ATO98139.1), Bat_KY417143(ATO98127.1), Bat_KY417145(ATO98152.1), Bat_KY417142(ATO98115.1), Bat_DQ071615(AAZ67058.1), Bat_DQ412043(ABD75329.1), Bat_DQ412042(ABD75320.1), Bat_GQ153544(ADE34785.1), Bat_GQ153543(ADE34772.1), Bat_GQ153542(ADE34761.1), Bat_GQ153541(ADE34750.1), Bat_GQ153540(ADE34739.1), Bat_GQ153539(ADE34728.1), Bat_DQ084200(AAZ41346.1), Bat_DQ084199(AAZ41335.1), Bat_GQ153548(ADE34829.1), Bat_GQ153547(ADE34818.1), Bat_GQ153546(ADE34807.1), Bat_GQ153545(ADE34796.1), Bat_DQ022305(AAY88872.1), Bat_KY938558(ASO66815.1), Bat_MN996532(QHR63306.1), Bat_KU182964(ANA96034.1), Feline_AY572038(AAU04671.1), Feline_AY572035(AAU04656.1), Feline_AY572034(AAU04647.1), Human_SARS_JX163926(AFR58721.1), Human_SARS_JX163928(AFR58749.1), Human_SARS_JX163927(AFR58735.1), Human_SARS_AY274119(AAP41044.1), Human_SARS_NC_004718(NP_849175.1), Human_SARS_DQ182595(ABA02274.1), Human_SARS_EU371559(ACB69855.1), Human_SARS_FJ882938(ACZ71938.1), Human_SARS_KF514423(AGT21325.1), Human_SARS_KF514396(AGT20920.1), Human_SARS_KF514418(AGT21250.1), Human_SARS_KF514409(AGT21115.1), Human_SARS_KF514397(AGT20935.1), Human_SARS_KF514408(AGT21100.1), Human_SARS_KF514394(AGT20890.1), Human_SARS_KF514419(AGT21265.1), Human_SARS_KF514404(AGT21040.1), Human_SARS_KF514400(AGT20980.1), Human_SARS_KF514415(AGT21205.1), Human_SARS_KF514413(AGT21175.1), Human_SARS_KF514388(AGT20800.1), Human_SARS_KF514392(AGT20860.1), Human_SARS_KF514422(AGT21310.1), Human_SARS_KF514421(AGT21295.1), Human_SARS_KF514399(AGT20965.1), Human_SARS_KF514398(AGT20950.1), Human_SARS_FJ882947(ACZ72072.1), Human_SARS_FJ882933(ACZ71863.1), Human_SARS_FJ882934(ACZ71878.1), Human_SARS_FJ882949(ACZ72100.1), Human_SARS_FJ882935(ACZ71893.1), Human_SARS_FJ882936(ACZ71908.1), Human_SARS_FJ882937(ACZ71923.1), Human_SARS_FJ882939(ACZ71953.1), Human_SARS_FJ882932(ACZ71848.1), Human_SARS_FJ882946(ACZ72057.1), Human_SARS_FJ882927(ACZ71774.1), Human_SARS_JF292921(AEA11005.1), Human_SARS_MK062180(AYV99768.1), Human_SARS_MK062184(AYV99824.1), Human_SARS_MK062183(AYV99810.1), Human_SARS_MK062182(AYV99796.1), Human_SARS_MK062181(AYV99782.1), Human_SARS_MK062179(AYV99754.1), Human_SARS_AP006561(BAC81411.1), Human_SARS_AP006560(BAC81397.1), Human_SARS_AP006559(BAC81383.1), Human_SARS_AP006558(BAC81369.1), Human_SARS_AP006557(BAC81355.1), Human_SARS_DQ497008(ABF65843.1), Human_SARS_DQ898174(ABI96965.1), Human_SARS_AY463060(AAR86782.1), Human_SARS_AY463059(AAR86792.1), Human_SARS_FJ882963(ACQ82732.1), Human_SARS_FJ882957(ACZ72217.1), Human_SARS_FJ882958(ACZ72232.1), Human_SARS_FJ882945(ACZ72042.1), Human_SARS_FJ882961(ACZ72276.1), Human_SARS_FJ882952(ACZ72143.1), Human_SARS_FJ882948(ACZ72085.1), Human_SARS_FJ882943(ACZ72012.1), Human_SARS_FJ882959(ACZ72247.1), Human_SARS_FJ882942(ACZ71998.1), Human_SARS_FJ882953(ACZ72158.1), Human_SARS_FJ882951(ACZ72129.1), Human_SARS_FJ882962(ACZ72291.1), Human_SARS_AY595412(AAT52337.1), Human_SARS_AY323977(AAP72981.1), Human_SARS_JQ316196(AFD56980.1), Human_SARS_GU553364(ADC35504.1), Human_SARS_GU553363(ADC35490.1), Human_SARS_JN854286(AFK10261.1), Human_SARS_AY390556(AAS00009.1), Human_SARS_AY291315(AAP33704.1), Human_SARS_AY310120(AAP50492.1), Human_SARS_FJ882926(ACZ71759.1), Human_SARS_FJ882930(ACZ71818.1), Human_SARS_KF514410(AGT21130.1), Human_SARS_KF514389(AGT20815.1), Human_SARS_KF514395(AGT20905.1), Human_SARS_KF514414(AGT21190.1), Human_SARS_KF514420(AGT21280.1), Human_SARS_KF514391(AGT20845.1), Human_SARS_KF514416(AGT21220.1), Human_SARS_KF514407(AGT21085.1), Human_SARS_KF514402(AGT21010.1), Human_SARS_KF514401(AGT20995.1), Human_SARS_KF514390(AGT20830.1), Human_SARS_KF514417(AGT21235.1), Human_SARS_KF514405(AGT21055.1), Human_SARS_KF514403(AGT21025.1), Human_SARS_KF514393(AGT20875.1), Human_SARS_KF514412(AGT21160.1), Human_SARS_KF514411(AGT21145.1), Human_SARS_KF514406(AGT21070.1), Human_SARS_FJ882941(ACZ71983.1), Human_SARS_FJ882956(ACZ72202.1), Human_SARS_FJ882954(ACZ72172.1), Human_SARS_FJ882940(ACZ71968.1), Human_SARS_FJ882960(ACZ72261.1), Human_SARS_FJ882944(ACZ72027.1), Human_SARS_FJ882955(ACZ72187.1), Human_SARS_FJ882931(ACZ71833.1), Human_SARS_FJ882929(ACZ71803.1), Human_SARS_FJ882928(ACZ71789.1), Human_SARS_JX162087(AFM43874.1), Human_SARS_JF292922(AEA11020.1), Human_SARS_AY864806(AAY60800.1), Human_SARS_EU371561(ACB69878.1), Human_SARS_EU371560(ACB69866.1), Human_SARS_EU371563(ACB69900.1), Human_SARS_EU371562(ACB69889.1), Human_SARS_EU371564(ACB69911.1), Human_SARS_AY864805(AAY60787.1), Human_SARS_AY427439(AAQ94067.1), Human_SARS_AY686863(AAV91638.1), Human_2019-nCoV_MN996531(QHR63296.1), Human_2019-nCoV_MN996530(QHR63286.1), Human_2019-nCoV_MN996529(QHR63276.1), Human_2019-nCoV_MN996528(QHR63266.1), Human_2019-nCoV_MN996527(QHR63256.1), Murine_JF292915(AEA10915.1), Murine_JF292914(AEA10900.1), Murine_JF292913(AEA10885.1), Murine_JF292912(AEA10870.1), Murine_JF292911(AEA10855.1), Murine_JF292920(AEA10990.1), Murine_JF292919(AEA10975.1), Murine_JF292918(AEA10960.1), Murine_JF292917(AEA10945.1), Murine_JF292916(AEA10930.1), Murine_JF292910(AEA10840.1), Murine_JF292909(AEA10825.1), Murine_JF292908(AEA10810.1), Murine_JF292907(AEA10795.1), Murine_HQ890541(AEA10630.1), Murine_HQ890546(AEA10705.1), Murine_HQ890545(AEA10690.1), Murine_HQ890544(AEA10675.1), Murine_HQ890543(AEA10660.1), Murine_HQ890542(AEA10645.1), Murine_JF292903(AEA10735.1), Murine_JF292902(AEA10720.1), Murine_HQ890533(AEA10510.1), Murine_HQ890532(AEA10495.1), Murine_HQ890531(AEA10480.1), Murine_JF292906(AEA10780.1), Murine_JF292905(AEA10765.1), Murine_JF292904(AEA10750.1), Murine_HQ890540(AEA10615.1), Murine_HQ890539(AEA10600.1), Murine_HQ890530(AEA10465.1), Murine_HQ890529(AEA10450.1), Murine_HQ890528(AEA10435.1), Murine_HQ890527(AEA10420.1), Murine_HQ890526(AEA10405.1), Murine_HQ890538(AEA10585.1), Murine_HQ890537(AEA10570.1), Murine_HQ890536(AEA10555.1), Murine_HQ890535(AEA10540.1), Murine_HQ890534(AEA10525.1), Civet_AY686864(AAV49737.1), Bat_FJ588686(ACU31038.1), Human_SARS_JX163923(AFR58679.1), Human_SARS_JX163924(AFR58693.1), Human_SARS_JX163925(AFR58707.1), Bat_KJ473811(AIA62284.1), Bat_KJ473812(AIA62296.1), Bat_KJ473813(AIA62306.1), Bat_KJ473814(AIA62316.1), Bat_KJ473815(AIA62326.1), Bat_KJ473816(AIA62336.1), Murine_MT308984(QJE50596.1),
Cluster604
 Avian_JX840411(AFX59333.1), Avian_MF508703(AWR92751.1), Avian_MG197727(AXX83289.1), Avian_KY933090(ATE90986.1), Avian_KY933089(ATE90977.1), Human_IBV_MK142676(QCX41901.1), Avian_MN307884(QJE49272.1),
Cluster605
 Avian_MK359255(QCB65098.1), Avian_NC_046965(YP_009755898.1),
Cluster606
 Human_SARS_DQ182595(ABA02265.1),
Cluster607
 Avian_EU022526(ABW75144.1),
Cluster608
 Rabbit_JN874561(AFE48815.1),
Cluster609
 Human_SARS_DQ182595(ABA02261.1),
Cluster610
 Human_SARS_DQ182595(ABA02262.1),
Cluster611
 Human_SARS_DQ182595(ABA02264.1),
Cluster612
 Avian_MN512436(QGN75364.1),
Cluster613
 Cow_FJ938065(ACT11009.1), Cow_NC_003045(NP_150079.1), Cow_AF220295(AAL40402.1), Cow_KU886219(ANJ04976.1), Cow_EF424618(ABP38272.1), Cow_EF424617(ABP38262.1), Cow_EF424620(ABP38288.1), Cow_MG757142(AVI15046.1), Cow_MG757141(AVI15035.1), Cow_MG757138(AVI15002.1), Cow_MG757140(AVI15024.1), Cow_MG757139(AVI15013.1), Cow_AF391542(AAL57310.1), Cow_AF391541(AAK83358.1), Cow_KX982264(ARD06001.1), Cow_MH043955(AVZ61131.1), Cow_MH043954(AVZ61121.1), Cow_MH043952(AVZ61101.1), Cow_FJ938063(ACT10985.1), Cow_EF424616(ABP38248.1), Cow_EF424615(ABP38233.1), Cow_FJ938064(ACT10997.1), Cow_EF424619(ABP38275.1), Cow_DQ811784(ABG89285.1), Cow_KU558922(ANJ04720.1), Deer_FJ425187(ACJ66979.1), Waterbuck_FJ425184(ACJ66942.1), Waterbuck_FJ425185(ACJ66954.1), Waterbuck_FJ425186(ACJ66974.1), Deer_FJ425188(ACJ66993.1), Deer_FJ425190(ACJ67014.1), Deer_FJ425189(ACJ67002.1), Antelope_EF424621(ABP38298.1), Giraffe_EF424622(ABP38307.1), Giraffe_EF424623(ABP38320.1), Giraffe_EF424624(ABP38336.1), Cow_U00735(AAA42912.1),
Cluster614
 Canine_JX860640(AFW97361.1), Canine_KX432213(AQT26499.1), Cow_FJ938066(ACT11020.1), Cow_FJ938065(ACT11008.1), Cow_NC_003045(NP_150078.1), Cow_AF220295(AAL40401.1), Cow_KU886219(ANJ04975.1), Cow_EF424618(ABP38265.1), Cow_EF424617(ABP38258.1), Cow_EF424620(ABP38293.1), Cow_MG757142(AVI15045.1), Cow_MG757141(AVI15034.1), Cow_MG757138(AVI15001.1), Cow_MG757140(AVI15023.1), Cow_MG757139(AVI15012.1), Cow_AF391542(AAL57309.1), Cow_AF391541(AAK83357.1), Cow_KX982264(ARD06000.1), Cow_MH043955(AVZ61130.1), Cow_MH043953(AVZ61110.1), Cow_MH043954(AVZ61120.1), Cow_MH043952(AVZ61100.1), Cow_AB354579(BAF75632.1), Cow_FJ938063(ACT10984.1), Cow_EF424616(ABP38249.1), Cow_EF424615(ABP38239.1), Cow_FJ938064(ACT10996.1), Cow_EF424619(ABP38282.1), Cow_DQ811784(ABG89292.1), Cow_KU558923(ANJ04730.1), Cow_KU558922(ANJ04719.1), Human_4408_FJ938067(ACT11031.1), Human_4408_FJ415324(ACJ35490.1), Waterbuck_FJ425184(ACJ66943.1), Waterbuck_FJ425185(ACJ66953.1), Waterbuck_FJ425186(ACJ66973.1), Deer_MG518518(AVN88331.1), Deer_FJ425188(ACJ66989.1), Deer_FJ425190(ACJ67013.1), Deer_FJ425189(ACJ67001.1), Antelope_EF424621(ABP38303.1), Giraffe_EF424622(ABP38316.1), Giraffe_EF424623(ABP38322.1), Giraffe_EF424624(ABP38332.1), Cow_U00735(AAK29738.2),
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